Gchil6914.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6914.t1
Unique NameGchil6914.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:679528..680259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1219076.N646_3634
PFAMs2OG-FeII_Oxy_2
Max annot lvl135623|Vibrionales
Evalue2.62e-43
EggNOG OGsCOG3145@1|root,COG3145@2|Bacteria,1RGXU@1224|Proteobacteria,1S6DD@1236|Gammaproteobacteria,1XWZP@135623|Vibrionales
DescriptionCOG3145 Alkylated DNA repair protein
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6914Gchil6914Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 679528..680259 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6914.t1.stop1Gchil6914.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 679528..679530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6914.t1.CDS1Gchil6914.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 679528..680259 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6914.t1.exon1Gchil6914.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 679528..680259 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6914.t1.start1Gchil6914.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 680257..680259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6914.t1Gchil6914.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 679528..680259 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6914.t1 ID=Gchil6914.t1|Name=Gchil6914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=244bp
MEKSPRKTSRRRQSQQFQLRTGPEGELILPENRGKITYRREFLTKEEADN
LLRATKTARSWARTPVTFFGKEVLQPRDTAFFGTKLYTYSNERREPTGWE
EDPPASNALHEMGKRIETLLALPQDWFNVILANRYNNGRDFMGWHSDNER
SLGREPIIASISLGAERRFLVRLRKAYQDKQPPEKIEYILAHGSLLIMSG
RMQSYYQHSLPKVALSKCNELRLNFTYRRVINENDHSKDQPDL*
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spliced messenger RNA

>Gchil6914.t1 ID=Gchil6914.t1|Name=Gchil6914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00004376_pilon:679528..680259- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAATCTCCGAGAAAGACCTCTAGACGACGACAGTCGCAGCAGTT
CCAGTTGCGCACAGGACCAGAAGGAGAGTTGATTCTTCCAGAAAACAGAG
GAAAGATAACGTACCGCAGAGAGTTTCTGACCAAAGAGGAGGCTGACAAT
CTTCTGCGAGCTACGAAAACTGCCCGATCTTGGGCAAGAACCCCGGTCAC
TTTTTTTGGTAAGGAGGTACTACAGCCAAGAGATACGGCTTTCTTCGGAA
CGAAACTATACACTTATAGCAATGAACGTAGAGAACCTACAGGCTGGGAA
GAAGACCCACCTGCCTCAAATGCCCTTCATGAAATGGGAAAGAGAATCGA
AACCCTTCTTGCCCTGCCGCAAGACTGGTTCAATGTAATTCTCGCGAACC
GCTACAATAACGGAAGAGATTTCATGGGATGGCATTCAGATAACGAAAGA
TCTTTAGGAAGAGAACCGATCATAGCTTCAATATCACTTGGAGCTGAAAG
AAGGTTCCTGGTGCGTTTGAGAAAGGCATACCAAGACAAACAGCCCCCAG
AAAAAATTGAATACATTCTTGCACACGGATCGTTGCTGATAATGAGCGGA
AGGATGCAAAGTTACTATCAACATTCCCTCCCTAAAGTGGCGCTCTCAAA
ATGTAATGAGCTGCGATTGAATTTTACGTACCGCCGTGTTATTAACGAAA
ACGACCACTCAAAAGATCAGCCTGATTTGTGA
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protein sequence of Gchil6914.t1

>Gchil6914.t1 ID=Gchil6914.t1|Name=Gchil6914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=244bp
MEKSPRKTSRRRQSQQFQLRTGPEGELILPENRGKITYRREFLTKEEADN
LLRATKTARSWARTPVTFFGKEVLQPRDTAFFGTKLYTYSNERREPTGWE
EDPPASNALHEMGKRIETLLALPQDWFNVILANRYNNGRDFMGWHSDNER
SLGREPIIASISLGAERRFLVRLRKAYQDKQPPEKIEYILAHGSLLIMSG
RMQSYYQHSLPKVALSKCNELRLNFTYRRVINENDHSKDQPDL*
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mRNA from alignment at tig00004376_pilon:679528..680259-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6914.t1 ID=Gchil6914.t1|Name=Gchil6914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00004376_pilon:679528..680259- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAATCTCCGAGAAAGACCTCTAGACGACGACAGTCGCAGCAGTT
CCAGTTGCGCACAGGACCAGAAGGAGAGTTGATTCTTCCAGAAAACAGAG
GAAAGATAACGTACCGCAGAGAGTTTCTGACCAAAGAGGAGGCTGACAAT
CTTCTGCGAGCTACGAAAACTGCCCGATCTTGGGCAAGAACCCCGGTCAC
TTTTTTTGGTAAGGAGGTACTACAGCCAAGAGATACGGCTTTCTTCGGAA
CGAAACTATACACTTATAGCAATGAACGTAGAGAACCTACAGGCTGGGAA
GAAGACCCACCTGCCTCAAATGCCCTTCATGAAATGGGAAAGAGAATCGA
AACCCTTCTTGCCCTGCCGCAAGACTGGTTCAATGTAATTCTCGCGAACC
GCTACAATAACGGAAGAGATTTCATGGGATGGCATTCAGATAACGAAAGA
TCTTTAGGAAGAGAACCGATCATAGCTTCAATATCACTTGGAGCTGAAAG
AAGGTTCCTGGTGCGTTTGAGAAAGGCATACCAAGACAAACAGCCCCCAG
AAAAAATTGAATACATTCTTGCACACGGATCGTTGCTGATAATGAGCGGA
AGGATGCAAAGTTACTATCAACATTCCCTCCCTAAAGTGGCGCTCTCAAA
ATGTAATGAGCTGCGATTGAATTTTACGTACCGCCGTGTTATTAACGAAA
ACGACCACTCAAAAGATCAGCCTGATTTGTGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:679528..680259-

>Gchil6914.t1 ID=Gchil6914.t1|Name=Gchil6914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00004376_pilon:679528..680259- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAATCTCCGAGAAAGACCTCTAGACGACGACAGTCGCAGCAGTT
CCAGTTGCGCACAGGACCAGAAGGAGAGTTGATTCTTCCAGAAAACAGAG
GAAAGATAACGTACCGCAGAGAGTTTCTGACCAAAGAGGAGGCTGACAAT
CTTCTGCGAGCTACGAAAACTGCCCGATCTTGGGCAAGAACCCCGGTCAC
TTTTTTTGGTAAGGAGGTACTACAGCCAAGAGATACGGCTTTCTTCGGAA
CGAAACTATACACTTATAGCAATGAACGTAGAGAACCTACAGGCTGGGAA
GAAGACCCACCTGCCTCAAATGCCCTTCATGAAATGGGAAAGAGAATCGA
AACCCTTCTTGCCCTGCCGCAAGACTGGTTCAATGTAATTCTCGCGAACC
GCTACAATAACGGAAGAGATTTCATGGGATGGCATTCAGATAACGAAAGA
TCTTTAGGAAGAGAACCGATCATAGCTTCAATATCACTTGGAGCTGAAAG
AAGGTTCCTGGTGCGTTTGAGAAAGGCATACCAAGACAAACAGCCCCCAG
AAAAAATTGAATACATTCTTGCACACGGATCGTTGCTGATAATGAGCGGA
AGGATGCAAAGTTACTATCAACATTCCCTCCCTAAAGTGGCGCTCTCAAA
ATGTAATGAGCTGCGATTGAATTTTACGTACCGCCGTGTTATTAACGAAA
ACGACCACTCAAAAGATCAGCCTGATTTGTGA
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