Gchil6924.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6924.t1
Unique NameGchil6924.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:721095..721644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008798668.1
PFAMsCyt-b5
Max annot lvl35493|Streptophyta
Evalue1.22e-28
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,37WIJ@33090|Viridiplantae,3GJQ6@35493|Streptophyta,3M0MG@4447|Liliopsida
DescriptionBelongs to the cytochrome b5 family
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6924Gchil6924Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 721095..721644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1Gchil6924.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 721095..721644 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1.stop1Gchil6924.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 721095..721097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1.CDS1Gchil6924.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 721095..721157 -
Gchil6924.t1.CDS2Gchil6924.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 721306..721644 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1.exon1Gchil6924.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 721095..721157 -
Gchil6924.t1.exon2Gchil6924.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 721306..721644 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1.intron1Gchil6924.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 721158..721305 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6924.t1.start1Gchil6924.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 721642..721644 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6924.t1 ID=Gchil6924.t1|Name=Gchil6924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=134bp
MLTLPFAIVWLFICICAYVLIRRYTHGGLGGGSAVLTAPQTASSLGFGRL
FTEEDVAVHNSQEDLWLIIRGKVYDFTDYVALHPGGEAMLRNAGRDSTMG
FSGSQHPTRVWDMIDEFYIGDLAPPETSDKKES*
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spliced messenger RNA

>Gchil6924.t1 ID=Gchil6924.t1|Name=Gchil6924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00004376_pilon:721095..721644- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACGCTACCCTTTGCGATCGTTTGGCTTTTCATTTGCATTTGTGC
GTATGTTCTTATCCGTCGGTATACGCATGGGGGTCTTGGGGGTGGATCCG
CTGTTCTAACTGCCCCTCAGACTGCATCAAGTCTAGGGTTTGGTCGATTA
TTTACTGAAGAGGATGTCGCTGTCCATAACTCTCAAGAAGATCTTTGGCT
CATCATTAGAGGCAAGGTTTATGACTTCACTGATTATGTTGCACTGCACC
CAGGCGGTGAAGCAATGCTCCGAAACGCAGGGCGGGACTCTACGATGGGA
TTCTCAGGCTCACAGCATCCGACTCGAGTTTGGGATATGATCGATGAATT
CTACATCGGGGATCTTGCTCCACCGGAGACATCCGACAAGAAAGAGAGCT
AA
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protein sequence of Gchil6924.t1

>Gchil6924.t1 ID=Gchil6924.t1|Name=Gchil6924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=134bp
MLTLPFAIVWLFICICAYVLIRRYTHGGLGGGSAVLTAPQTASSLGFGRL
FTEEDVAVHNSQEDLWLIIRGKVYDFTDYVALHPGGEAMLRNAGRDSTMG
FSGSQHPTRVWDMIDEFYIGDLAPPETSDKKES*
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mRNA from alignment at tig00004376_pilon:721095..721644-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6924.t1 ID=Gchil6924.t1|Name=Gchil6924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=550bp|location=Sequence derived from alignment at tig00004376_pilon:721095..721644- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACGCTACCCTTTGCGATCGTTTGGCTTTTCATTTGCATTTGTGC
GTATGTTCTTATCCGTCGGTATACGCATGGGGGTCTTGGGGGTGGATCCG
CTGTTCTAACTGCCCCTCAGACTGCATCAAGTCTAGGGTTTGGTCGATTA
TTTACTGAAGAGGATGTCGCTGTCCATAACTCTCAAGAAGATCTTTGGCT
CATCATTAGAGGCAAGGTTTATGACTTCACTGATTATGTTGCACTGCACC
CAGGCGGTGAAGCAATGCTCCGAAACGCAGGGCGGGACTCTACGATGGGA
TTCTCAGGCTCACAGCATCCGACTCGAGTTTGGGATATGGTAAGTTGAAG
GTTTAAAGAAGATTTCCTTCTTTCAAAGTTTCAAGTCCGTTGCAGTTAAA
GAAGGCATTTCTTTGGCAACGGTTTCAGTTTGTGGTTTACAAATGATAAT
TGAGTGATGAATCTAACAATGGTTTTCTTTTATGAAGATCGATGAATTCT
ACATCGGGGATCTTGCTCCACCGGAGACATCCGACAAGAAAGAGAGCTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:721095..721644-

>Gchil6924.t1 ID=Gchil6924.t1|Name=Gchil6924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00004376_pilon:721095..721644- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCACGCTACCCTTTGCGATCGTTTGGCTTTTCATTTGCATTTGTGC
GTATGTTCTTATCCGTCGGTATACGCATGGGGGTCTTGGGGGTGGATCCG
CTGTTCTAACTGCCCCTCAGACTGCATCAAGTCTAGGGTTTGGTCGATTA
TTTACTGAAGAGGATGTCGCTGTCCATAACTCTCAAGAAGATCTTTGGCT
CATCATTAGAGGCAAGGTTTATGACTTCACTGATTATGTTGCACTGCACC
CAGGCGGTGAAGCAATGCTCCGAAACGCAGGGCGGGACTCTACGATGGGA
TTCTCAGGCTCACAGCATCCGACTCGAGTTTGGGATATGATCGATGAATT
CTACATCGGGGATCTTGCTCCACCGGAGACATCCGACAAGAAAGAGAGCT
AA
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