Gchil6817.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6817.t1
Unique NameGchil6817.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:47912..48552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6817Gchil6817Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 47912..48552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1Gchil6817.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 47912..48552 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1.stop1Gchil6817.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 47912..47914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1.CDS1Gchil6817.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 47912..48143 -
Gchil6817.t1.CDS2Gchil6817.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 48217..48405 -
Gchil6817.t1.CDS3Gchil6817.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 48488..48552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1.exon1Gchil6817.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 47912..48143 -
Gchil6817.t1.exon2Gchil6817.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 48217..48405 -
Gchil6817.t1.exon3Gchil6817.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 48488..48552 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1.intron1Gchil6817.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 48144..48216 -
Gchil6817.t1.intron2Gchil6817.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 48406..48487 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6817.t1.start1Gchil6817.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 48550..48552 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6817.t1 ID=Gchil6817.t1|Name=Gchil6817.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=162bp
MCSRCARGLNRITLDIFPATLGVSEKSVRESPANYFKRDGIYLQLIETNR
VSDPDHSDMQKKKQSTAKSPHSSSTSQARNKDEQRIMLRPQQLADAPLRV
VCNCCEQKTDATLERLENMDGTSFNAMAWRKGMMVAAGQPAPYTEQDVAS
FFEENSLFNSN*
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spliced messenger RNA

>Gchil6817.t1 ID=Gchil6817.t1|Name=Gchil6817.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00004376_pilon:47912..48552- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCTCGATGCGCTCGGGGTTTGAACCGGATAACCCTAGACATTTT
CCCTGCTACGCTGGGAGTATCTGAGAAAAGTGTAAGAGAAAGCCCTGCAA
ACTATTTCAAGAGGGATGGCATTTATCTTCAACTTATCGAGACCAACCGC
GTCTCCGACCCGGATCACTCCGACATGCAAAAGAAGAAACAATCGACGGC
CAAGTCGCCGCATTCGTCGTCCACATCACAAGCCCGCAACAAAGACGAAC
AGCGCATAATGCTACGGCCACAACAACTTGCTGATGCTCCTTTGCGAGTC
GTTTGTAACTGTTGTGAGCAGAAAACCGATGCCACATTAGAGCGTCTGGA
GAACATGGATGGAACTTCTTTCAATGCAATGGCATGGCGAAAAGGCATGA
TGGTTGCCGCAGGTCAACCAGCGCCTTATACCGAGCAGGATGTTGCCAGT
TTTTTTGAAGAAAACTCTTTGTTCAATTCAAATTAG
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protein sequence of Gchil6817.t1

>Gchil6817.t1 ID=Gchil6817.t1|Name=Gchil6817.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=162bp
MCSRCARGLNRITLDIFPATLGVSEKSVRESPANYFKRDGIYLQLIETNR
VSDPDHSDMQKKKQSTAKSPHSSSTSQARNKDEQRIMLRPQQLADAPLRV
VCNCCEQKTDATLERLENMDGTSFNAMAWRKGMMVAAGQPAPYTEQDVAS
FFEENSLFNSN*
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mRNA from alignment at tig00004376_pilon:47912..48552-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6817.t1 ID=Gchil6817.t1|Name=Gchil6817.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=641bp|location=Sequence derived from alignment at tig00004376_pilon:47912..48552- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCTCGATGCGCTCGGGGTTTGAACCGGATAACCCTAGACATTTT
CCCTGCTACGCTGGGGTAAGTTTTATTCTGCGAATATTCATCATTCATCA
GTTCTCTGAAGAGAGCGAGCTTCTGACTAGCGGATTTTAACGTCAAGAGT
ATCTGAGAAAAGTGTAAGAGAAAGCCCTGCAAACTATTTCAAGAGGGATG
GCATTTATCTTCAACTTATCGAGACCAACCGCGTCTCCGACCCGGATCAC
TCCGACATGCAAAAGAAGAAACAATCGACGGCCAAGTCGCCGCATTCGTC
GTCCACATCACAAGCCCGCAACAAAGACGAACAGCGGTGTTATGGAGAAT
GTTGACATCGATACAACTGATATCACAACCTACATATCTTGTCCTGTTTG
TTTCAATAGCATAATGCTACGGCCACAACAACTTGCTGATGCTCCTTTGC
GAGTCGTTTGTAACTGTTGTGAGCAGAAAACCGATGCCACATTAGAGCGT
CTGGAGAACATGGATGGAACTTCTTTCAATGCAATGGCATGGCGAAAAGG
CATGATGGTTGCCGCAGGTCAACCAGCGCCTTATACCGAGCAGGATGTTG
CCAGTTTTTTTGAAGAAAACTCTTTGTTCAATTCAAATTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:47912..48552-

>Gchil6817.t1 ID=Gchil6817.t1|Name=Gchil6817.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00004376_pilon:47912..48552- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCTCGATGCGCTCGGGGTTTGAACCGGATAACCCTAGACATTTT
CCCTGCTACGCTGGGAGTATCTGAGAAAAGTGTAAGAGAAAGCCCTGCAA
ACTATTTCAAGAGGGATGGCATTTATCTTCAACTTATCGAGACCAACCGC
GTCTCCGACCCGGATCACTCCGACATGCAAAAGAAGAAACAATCGACGGC
CAAGTCGCCGCATTCGTCGTCCACATCACAAGCCCGCAACAAAGACGAAC
AGCGCATAATGCTACGGCCACAACAACTTGCTGATGCTCCTTTGCGAGTC
GTTTGTAACTGTTGTGAGCAGAAAACCGATGCCACATTAGAGCGTCTGGA
GAACATGGATGGAACTTCTTTCAATGCAATGGCATGGCGAAAAGGCATGA
TGGTTGCCGCAGGTCAACCAGCGCCTTATACCGAGCAGGATGTTGCCAGT
TTTTTTGAAGAAAACTCTTTGTTCAATTCAAATTAG
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