Gchil4080.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4080.t1
Unique NameGchil4080.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:560470..562100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4080Gchil4080Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 560470..562100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1Gchil4080.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 560470..562100 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1.stop1Gchil4080.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 560470..560472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1.CDS1Gchil4080.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 560470..560504 -
Gchil4080.t1.CDS2Gchil4080.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 560591..562100 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1.exon1Gchil4080.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 560470..560504 -
Gchil4080.t1.exon2Gchil4080.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 560591..562100 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1.intron1Gchil4080.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 560505..560590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4080.t1.start1Gchil4080.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 562098..562100 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4080.t1 ID=Gchil4080.t1|Name=Gchil4080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=515bp
MYPLHPTWASSPFPFYAWPAPPPPPPPPPSSSRPALSHSHSHSHAHAHAH
AHAHAHAHAHSHSRAAHDAAAALSSSNASAISSRSRRPPRRRSPTPPPST
SLPPAPPAPTKHDVALAADKALAADDNFVSLSLMLTSWNNALSNPADPPA
ALAFSQALHASRALCAVALSDPILSANHPTLLAQQTALFHLVLYAPDSLA
EPLAATTRSCYAADPTLPQRHHLSQLLTMLADLRLAADAFSSVLPAHPPL
PAHDAALPSGLLPAQALAKSASHLRHGLALAHIQLHRTLLISRYAADIDR
LLSHQPLFSPLRAHLARVLSADVAARTSRLQWNNLLLSFSNRVFSSVQRE
SNAFLNRFHALQQRIHSCLDDVSLFDTPPKSLSAKAHQTVNAASAAAALL
SAQQRAFDWALHAAVLVRAVRTAVRALVALAAHMRPAESLVLQFERAVDD
AFSHVDNVVEYAAHTPTKRVLATVDSNVAPGKRILRFEEPPKQQRSPNAR
RKPLAQTTRHSGPE*
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spliced messenger RNA

>Gchil4080.t1 ID=Gchil4080.t1|Name=Gchil4080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00004373_pilon:560470..562100- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCCGCTGCACCCCACGTGGGCCTCGTCCCCCTTTCCGTTCTACGC
ATGGCCGGCCCCTCCGCCGCCGCCACCCCCCCCACCGTCTTCCTCGCGCC
CCGCGCTCTCGCACTCGCACTCTCATTCTCATGCCCACGCCCACGCCCAC
GCCCACGCCCACGCCCACGCCCACGCCCACTCGCACTCGCGTGCGGCCCA
CGACGCTGCTGCCGCTCTTTCTTCGTCCAACGCCTCTGCCATCTCGTCGC
GCTCTCGACGCCCGCCGCGTCGCCGCTCCCCTACACCGCCTCCTTCTACC
TCGCTGCCGCCCGCGCCCCCCGCCCCTACCAAGCACGACGTCGCCCTCGC
CGCCGACAAGGCGCTTGCCGCCGATGACAACTTCGTCTCGCTCTCGCTCA
TGCTCACCTCGTGGAACAACGCCCTATCCAACCCGGCCGATCCCCCCGCC
GCCCTCGCCTTCTCCCAGGCCCTCCACGCCTCGCGCGCCCTCTGCGCCGT
CGCCCTCAGCGACCCCATCCTCTCCGCCAACCACCCCACCCTGCTTGCCC
AGCAGACCGCCCTCTTCCACCTCGTCCTCTACGCCCCCGACTCCCTCGCA
GAGCCCCTGGCCGCCACCACCCGCTCCTGCTACGCCGCCGACCCCACCCT
GCCGCAGCGCCACCACCTTTCGCAGCTTCTCACAATGCTCGCCGACCTCC
GCCTCGCCGCCGACGCCTTCTCCTCCGTCCTCCCGGCCCACCCCCCGCTC
CCCGCCCATGATGCCGCCCTACCTTCCGGCCTGCTCCCCGCCCAGGCCCT
GGCCAAGTCCGCCAGCCACCTGCGCCACGGCCTGGCCCTGGCCCACATCC
AACTGCATCGCACCCTCTTGATCTCACGCTACGCCGCCGATATCGATCGC
CTGCTCTCCCACCAGCCCCTGTTCTCCCCGCTGCGCGCCCATCTGGCCCG
CGTCCTCTCCGCCGACGTGGCCGCCCGCACCTCCCGTCTGCAGTGGAACA
ACCTGCTTCTTTCGTTTTCCAACCGCGTCTTCTCCTCCGTTCAGCGCGAG
TCCAACGCCTTTCTCAACCGCTTCCACGCCCTGCAACAGCGCATTCACTC
CTGTTTGGACGACGTTTCCCTGTTTGACACCCCGCCCAAGTCCCTGTCCG
CCAAGGCCCACCAGACCGTCAACGCCGCCTCCGCCGCTGCCGCCTTGCTT
TCCGCCCAGCAGCGCGCCTTTGACTGGGCCCTGCACGCCGCCGTGCTTGT
GCGCGCCGTGCGAACTGCCGTGCGCGCCCTCGTCGCCCTCGCCGCTCACA
TGCGCCCCGCCGAGTCGCTTGTGCTTCAGTTTGAACGCGCCGTTGATGAC
GCCTTTTCCCACGTCGACAACGTCGTCGAGTATGCAGCCCACACCCCCAC
CAAGCGTGTCTTGGCCACCGTCGACAGCAACGTCGCCCCTGGCAAGCGCA
TCTTGCGCTTTGAGGAGCCCCCAAAGCAGCAACGCTCCCCCAACGCCCGC
CGCAAGCCGCTCGCCCAAACAACCCGGCACTCCGGCCCCGAATAA
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protein sequence of Gchil4080.t1

>Gchil4080.t1 ID=Gchil4080.t1|Name=Gchil4080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=515bp
MYPLHPTWASSPFPFYAWPAPPPPPPPPPSSSRPALSHSHSHSHAHAHAH
AHAHAHAHAHSHSRAAHDAAAALSSSNASAISSRSRRPPRRRSPTPPPST
SLPPAPPAPTKHDVALAADKALAADDNFVSLSLMLTSWNNALSNPADPPA
ALAFSQALHASRALCAVALSDPILSANHPTLLAQQTALFHLVLYAPDSLA
EPLAATTRSCYAADPTLPQRHHLSQLLTMLADLRLAADAFSSVLPAHPPL
PAHDAALPSGLLPAQALAKSASHLRHGLALAHIQLHRTLLISRYAADIDR
LLSHQPLFSPLRAHLARVLSADVAARTSRLQWNNLLLSFSNRVFSSVQRE
SNAFLNRFHALQQRIHSCLDDVSLFDTPPKSLSAKAHQTVNAASAAAALL
SAQQRAFDWALHAAVLVRAVRTAVRALVALAAHMRPAESLVLQFERAVDD
AFSHVDNVVEYAAHTPTKRVLATVDSNVAPGKRILRFEEPPKQQRSPNAR
RKPLAQTTRHSGPE*
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mRNA from alignment at tig00004373_pilon:560470..562100-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4080.t1 ID=Gchil4080.t1|Name=Gchil4080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1631bp|location=Sequence derived from alignment at tig00004373_pilon:560470..562100- (Gracilaria chilensis NLEC103_M9 male)
ATGTACCCGCTGCACCCCACGTGGGCCTCGTCCCCCTTTCCGTTCTACGC
ATGGCCGGCCCCTCCGCCGCCGCCACCCCCCCCACCGTCTTCCTCGCGCC
CCGCGCTCTCGCACTCGCACTCTCATTCTCATGCCCACGCCCACGCCCAC
GCCCACGCCCACGCCCACGCCCACGCCCACTCGCACTCGCGTGCGGCCCA
CGACGCTGCTGCCGCTCTTTCTTCGTCCAACGCCTCTGCCATCTCGTCGC
GCTCTCGACGCCCGCCGCGTCGCCGCTCCCCTACACCGCCTCCTTCTACC
TCGCTGCCGCCCGCGCCCCCCGCCCCTACCAAGCACGACGTCGCCCTCGC
CGCCGACAAGGCGCTTGCCGCCGATGACAACTTCGTCTCGCTCTCGCTCA
TGCTCACCTCGTGGAACAACGCCCTATCCAACCCGGCCGATCCCCCCGCC
GCCCTCGCCTTCTCCCAGGCCCTCCACGCCTCGCGCGCCCTCTGCGCCGT
CGCCCTCAGCGACCCCATCCTCTCCGCCAACCACCCCACCCTGCTTGCCC
AGCAGACCGCCCTCTTCCACCTCGTCCTCTACGCCCCCGACTCCCTCGCA
GAGCCCCTGGCCGCCACCACCCGCTCCTGCTACGCCGCCGACCCCACCCT
GCCGCAGCGCCACCACCTTTCGCAGCTTCTCACAATGCTCGCCGACCTCC
GCCTCGCCGCCGACGCCTTCTCCTCCGTCCTCCCGGCCCACCCCCCGCTC
CCCGCCCATGATGCCGCCCTACCTTCCGGCCTGCTCCCCGCCCAGGCCCT
GGCCAAGTCCGCCAGCCACCTGCGCCACGGCCTGGCCCTGGCCCACATCC
AACTGCATCGCACCCTCTTGATCTCACGCTACGCCGCCGATATCGATCGC
CTGCTCTCCCACCAGCCCCTGTTCTCCCCGCTGCGCGCCCATCTGGCCCG
CGTCCTCTCCGCCGACGTGGCCGCCCGCACCTCCCGTCTGCAGTGGAACA
ACCTGCTTCTTTCGTTTTCCAACCGCGTCTTCTCCTCCGTTCAGCGCGAG
TCCAACGCCTTTCTCAACCGCTTCCACGCCCTGCAACAGCGCATTCACTC
CTGTTTGGACGACGTTTCCCTGTTTGACACCCCGCCCAAGTCCCTGTCCG
CCAAGGCCCACCAGACCGTCAACGCCGCCTCCGCCGCTGCCGCCTTGCTT
TCCGCCCAGCAGCGCGCCTTTGACTGGGCCCTGCACGCCGCCGTGCTTGT
GCGCGCCGTGCGAACTGCCGTGCGCGCCCTCGTCGCCCTCGCCGCTCACA
TGCGCCCCGCCGAGTCGCTTGTGCTTCAGTTTGAACGCGCCGTTGATGAC
GCCTTTTCCCACGTCGACAACGTCGTCGAGTATGCAGCCCACACCCCCAC
CAAGCGTGTCTTGGCCACCGTCGACAGCAACGTCGCCCCTGGCAAGCGCA
TCTTGCGCTTTGAGGAGCCCCCAAAGCAGCAACGCTCCCCCAACGCCCGC
CGCAAGCCGCGTCACGCCCGCATGAAGAGCTCGCCCGATGCCCTGCTGCA
CCTCAACGCCCATTTTGACGACTATGACGACGAGAGCGACGCGCAGTCGC
CCAAACAACCCGGCACTCCGGCCCCGAATAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:560470..562100-

>Gchil4080.t1 ID=Gchil4080.t1|Name=Gchil4080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00004373_pilon:560470..562100- (Gracilaria chilensis NLEC103_M9 male)
ATGTACCCGCTGCACCCCACGTGGGCCTCGTCCCCCTTTCCGTTCTACGC
ATGGCCGGCCCCTCCGCCGCCGCCACCCCCCCCACCGTCTTCCTCGCGCC
CCGCGCTCTCGCACTCGCACTCTCATTCTCATGCCCACGCCCACGCCCAC
GCCCACGCCCACGCCCACGCCCACGCCCACTCGCACTCGCGTGCGGCCCA
CGACGCTGCTGCCGCTCTTTCTTCGTCCAACGCCTCTGCCATCTCGTCGC
GCTCTCGACGCCCGCCGCGTCGCCGCTCCCCTACACCGCCTCCTTCTACC
TCGCTGCCGCCCGCGCCCCCCGCCCCTACCAAGCACGACGTCGCCCTCGC
CGCCGACAAGGCGCTTGCCGCCGATGACAACTTCGTCTCGCTCTCGCTCA
TGCTCACCTCGTGGAACAACGCCCTATCCAACCCGGCCGATCCCCCCGCC
GCCCTCGCCTTCTCCCAGGCCCTCCACGCCTCGCGCGCCCTCTGCGCCGT
CGCCCTCAGCGACCCCATCCTCTCCGCCAACCACCCCACCCTGCTTGCCC
AGCAGACCGCCCTCTTCCACCTCGTCCTCTACGCCCCCGACTCCCTCGCA
GAGCCCCTGGCCGCCACCACCCGCTCCTGCTACGCCGCCGACCCCACCCT
GCCGCAGCGCCACCACCTTTCGCAGCTTCTCACAATGCTCGCCGACCTCC
GCCTCGCCGCCGACGCCTTCTCCTCCGTCCTCCCGGCCCACCCCCCGCTC
CCCGCCCATGATGCCGCCCTACCTTCCGGCCTGCTCCCCGCCCAGGCCCT
GGCCAAGTCCGCCAGCCACCTGCGCCACGGCCTGGCCCTGGCCCACATCC
AACTGCATCGCACCCTCTTGATCTCACGCTACGCCGCCGATATCGATCGC
CTGCTCTCCCACCAGCCCCTGTTCTCCCCGCTGCGCGCCCATCTGGCCCG
CGTCCTCTCCGCCGACGTGGCCGCCCGCACCTCCCGTCTGCAGTGGAACA
ACCTGCTTCTTTCGTTTTCCAACCGCGTCTTCTCCTCCGTTCAGCGCGAG
TCCAACGCCTTTCTCAACCGCTTCCACGCCCTGCAACAGCGCATTCACTC
CTGTTTGGACGACGTTTCCCTGTTTGACACCCCGCCCAAGTCCCTGTCCG
CCAAGGCCCACCAGACCGTCAACGCCGCCTCCGCCGCTGCCGCCTTGCTT
TCCGCCCAGCAGCGCGCCTTTGACTGGGCCCTGCACGCCGCCGTGCTTGT
GCGCGCCGTGCGAACTGCCGTGCGCGCCCTCGTCGCCCTCGCCGCTCACA
TGCGCCCCGCCGAGTCGCTTGTGCTTCAGTTTGAACGCGCCGTTGATGAC
GCCTTTTCCCACGTCGACAACGTCGTCGAGTATGCAGCCCACACCCCCAC
CAAGCGTGTCTTGGCCACCGTCGACAGCAACGTCGCCCCTGGCAAGCGCA
TCTTGCGCTTTGAGGAGCCCCCAAAGCAGCAACGCTCCCCCAACGCCCGC
CGCAAGCCGCTCGCCCAAACAACCCGGCACTCCGGCCCCGAATAA
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