Gchil4056.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4056.t1
Unique NameGchil4056.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:287617..288660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6412.HelroP110129
Preferred nameADAL
PFAMsA_deaminase
Max annot lvl33208|Metazoa
KEGG rclassRC00477
KEGG koko:K01488
KEGG ReactionR01560,R02556
KEGG Pathwayko00230,ko01100,ko05340,map00230,map01100,map05340
GOsGO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006154,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043101,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046102,GO:0046103,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
Evalue3.09e-61
EggNOG OGsCOG1816@1|root,KOG1097@2759|Eukaryota,38FYY@33154|Opisthokonta,3BAWN@33208|Metazoa,3CZWD@33213|Bilateria
EC3.5.4.4
Descriptioninosine biosynthetic process
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4056Gchil4056Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 287617..288660 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4056.t1.start1Gchil4056.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 287617..287619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4056.t1.CDS1Gchil4056.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 287617..288660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4056.t1.exon1Gchil4056.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 287617..288660 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4056.t1.stop1Gchil4056.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 288658..288660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4056.t1Gchil4056.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 287617..288660 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4056.t1 ID=Gchil4056.t1|Name=Gchil4056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MPKVELHAHLSGSIREKTIRKLLQNPENGAIRREGMALLEVETMTLEHGF
RLFPVIHRLICDSEKLHAVVQDVLHDFAEENTVYVELRTTPRDSSNMTCE
KYLLTVLRGVAEYHATHQEGLVCRVLVSICRHQPVQMAWDTIELTRRVIE
EHPELGDLIVGFDFSGDPKKGSWNEFEPVLRDVRRKFDLPITLHFGEVLN
NEECMQMLDFKPDRIGHAAVMSTAVVQRLLSQKRLLGVEVCLTSNLMTTS
IADVQDHPVVKYLLPTAHPICICTDDAGIFRTSLSQEYRKLLSVYPMTRA
QTTRMLLGALDMAFCRDEKLMNKVRKNACDLLEELESMGANYVGTDE*
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spliced messenger RNA

>Gchil4056.t1 ID=Gchil4056.t1|Name=Gchil4056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004373_pilon:287617..288660+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGGTAGAATTGCACGCTCATCTCAGTGGCTCTATCCGTGAGAA
AACTATCCGAAAACTCCTGCAAAACCCTGAGAATGGGGCAATCCGCCGAG
AAGGGATGGCCTTGTTGGAAGTGGAGACCATGACCTTAGAGCATGGTTTT
CGTCTTTTCCCCGTCATTCATAGACTGATATGTGATTCAGAAAAATTGCA
CGCAGTTGTTCAAGATGTTCTTCATGATTTTGCAGAAGAAAACACAGTTT
ACGTTGAACTCCGAACCACGCCGCGAGATTCGTCGAACATGACCTGTGAG
AAATACCTGCTAACAGTTCTTCGAGGAGTGGCTGAATATCACGCCACGCA
CCAAGAGGGGCTTGTTTGTCGCGTTCTAGTTTCTATATGTCGGCATCAAC
CAGTACAGATGGCATGGGATACGATTGAGCTGACAAGGAGGGTAATCGAG
GAACATCCGGAACTTGGTGACCTAATTGTGGGGTTTGATTTTAGCGGAGA
CCCGAAAAAAGGCTCATGGAATGAGTTTGAACCAGTGTTGAGAGACGTGA
GAAGGAAATTCGATTTGCCAATAACGCTGCACTTTGGCGAAGTTTTAAAC
AACGAGGAGTGTATGCAAATGTTGGACTTCAAGCCAGATCGTATCGGTCA
TGCAGCAGTGATGTCCACAGCAGTGGTGCAGAGATTGTTGTCCCAAAAGC
GTTTGCTCGGGGTCGAAGTGTGTTTGACTTCAAATTTGATGACTACTAGT
ATTGCAGATGTTCAGGATCACCCAGTGGTGAAGTATCTTTTGCCCACTGC
ACACCCCATTTGCATTTGTACTGATGACGCCGGGATTTTCCGGACTTCAC
TTTCACAGGAGTACAGAAAATTGCTGAGCGTTTACCCGATGACGCGAGCC
CAAACTACGAGGATGTTGCTTGGGGCTTTGGACATGGCGTTTTGTAGGGA
TGAGAAGTTAATGAACAAAGTACGAAAGAATGCATGCGATCTACTCGAGG
AGCTGGAAAGCATGGGCGCAAACTACGTTGGAACGGACGAATGA
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protein sequence of Gchil4056.t1

>Gchil4056.t1 ID=Gchil4056.t1|Name=Gchil4056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MPKVELHAHLSGSIREKTIRKLLQNPENGAIRREGMALLEVETMTLEHGF
RLFPVIHRLICDSEKLHAVVQDVLHDFAEENTVYVELRTTPRDSSNMTCE
KYLLTVLRGVAEYHATHQEGLVCRVLVSICRHQPVQMAWDTIELTRRVIE
EHPELGDLIVGFDFSGDPKKGSWNEFEPVLRDVRRKFDLPITLHFGEVLN
NEECMQMLDFKPDRIGHAAVMSTAVVQRLLSQKRLLGVEVCLTSNLMTTS
IADVQDHPVVKYLLPTAHPICICTDDAGIFRTSLSQEYRKLLSVYPMTRA
QTTRMLLGALDMAFCRDEKLMNKVRKNACDLLEELESMGANYVGTDE*
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mRNA from alignment at tig00004373_pilon:287617..288660+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4056.t1 ID=Gchil4056.t1|Name=Gchil4056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004373_pilon:287617..288660+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAAGGTAGAATTGCACGCTCATCTCAGTGGCTCTATCCGTGAGAA
AACTATCCGAAAACTCCTGCAAAACCCTGAGAATGGGGCAATCCGCCGAG
AAGGGATGGCCTTGTTGGAAGTGGAGACCATGACCTTAGAGCATGGTTTT
CGTCTTTTCCCCGTCATTCATAGACTGATATGTGATTCAGAAAAATTGCA
CGCAGTTGTTCAAGATGTTCTTCATGATTTTGCAGAAGAAAACACAGTTT
ACGTTGAACTCCGAACCACGCCGCGAGATTCGTCGAACATGACCTGTGAG
AAATACCTGCTAACAGTTCTTCGAGGAGTGGCTGAATATCACGCCACGCA
CCAAGAGGGGCTTGTTTGTCGCGTTCTAGTTTCTATATGTCGGCATCAAC
CAGTACAGATGGCATGGGATACGATTGAGCTGACAAGGAGGGTAATCGAG
GAACATCCGGAACTTGGTGACCTAATTGTGGGGTTTGATTTTAGCGGAGA
CCCGAAAAAAGGCTCATGGAATGAGTTTGAACCAGTGTTGAGAGACGTGA
GAAGGAAATTCGATTTGCCAATAACGCTGCACTTTGGCGAAGTTTTAAAC
AACGAGGAGTGTATGCAAATGTTGGACTTCAAGCCAGATCGTATCGGTCA
TGCAGCAGTGATGTCCACAGCAGTGGTGCAGAGATTGTTGTCCCAAAAGC
GTTTGCTCGGGGTCGAAGTGTGTTTGACTTCAAATTTGATGACTACTAGT
ATTGCAGATGTTCAGGATCACCCAGTGGTGAAGTATCTTTTGCCCACTGC
ACACCCCATTTGCATTTGTACTGATGACGCCGGGATTTTCCGGACTTCAC
TTTCACAGGAGTACAGAAAATTGCTGAGCGTTTACCCGATGACGCGAGCC
CAAACTACGAGGATGTTGCTTGGGGCTTTGGACATGGCGTTTTGTAGGGA
TGAGAAGTTAATGAACAAAGTACGAAAGAATGCATGCGATCTACTCGAGG
AGCTGGAAAGCATGGGCGCAAACTACGTTGGAACGGACGAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:287617..288660+

>Gchil4056.t1 ID=Gchil4056.t1|Name=Gchil4056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00004373_pilon:287617..288660+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAAGGTAGAATTGCACGCTCATCTCAGTGGCTCTATCCGTGAGAA
AACTATCCGAAAACTCCTGCAAAACCCTGAGAATGGGGCAATCCGCCGAG
AAGGGATGGCCTTGTTGGAAGTGGAGACCATGACCTTAGAGCATGGTTTT
CGTCTTTTCCCCGTCATTCATAGACTGATATGTGATTCAGAAAAATTGCA
CGCAGTTGTTCAAGATGTTCTTCATGATTTTGCAGAAGAAAACACAGTTT
ACGTTGAACTCCGAACCACGCCGCGAGATTCGTCGAACATGACCTGTGAG
AAATACCTGCTAACAGTTCTTCGAGGAGTGGCTGAATATCACGCCACGCA
CCAAGAGGGGCTTGTTTGTCGCGTTCTAGTTTCTATATGTCGGCATCAAC
CAGTACAGATGGCATGGGATACGATTGAGCTGACAAGGAGGGTAATCGAG
GAACATCCGGAACTTGGTGACCTAATTGTGGGGTTTGATTTTAGCGGAGA
CCCGAAAAAAGGCTCATGGAATGAGTTTGAACCAGTGTTGAGAGACGTGA
GAAGGAAATTCGATTTGCCAATAACGCTGCACTTTGGCGAAGTTTTAAAC
AACGAGGAGTGTATGCAAATGTTGGACTTCAAGCCAGATCGTATCGGTCA
TGCAGCAGTGATGTCCACAGCAGTGGTGCAGAGATTGTTGTCCCAAAAGC
GTTTGCTCGGGGTCGAAGTGTGTTTGACTTCAAATTTGATGACTACTAGT
ATTGCAGATGTTCAGGATCACCCAGTGGTGAAGTATCTTTTGCCCACTGC
ACACCCCATTTGCATTTGTACTGATGACGCCGGGATTTTCCGGACTTCAC
TTTCACAGGAGTACAGAAAATTGCTGAGCGTTTACCCGATGACGCGAGCC
CAAACTACGAGGATGTTGCTTGGGGCTTTGGACATGGCGTTTTGTAGGGA
TGAGAAGTTAATGAACAAAGTACGAAAGAATGCATGCGATCTACTCGAGG
AGCTGGAAAGCATGGGCGCAAACTACGTTGGAACGGACGAATGA
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