Gchil4086.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4086.t1
Unique NameGchil4086.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:622607..623275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4086Gchil4086Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 622607..623275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4086.t1.stop1Gchil4086.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 622607..622609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4086.t1.CDS1Gchil4086.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 622607..623275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4086.t1.exon1Gchil4086.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 622607..623275 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4086.t1.start1Gchil4086.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 623273..623275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4086.t1Gchil4086.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 622607..623275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4086.t1 ID=Gchil4086.t1|Name=Gchil4086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MTVLPDDTALDMLSFALSGPGIVATAAFLVSGTAVLFSFADIGPKRAKSS
VSYLLQVTVPASRAVERPDGTVARLRQGETVLQFNSLEECTTVAKRLEEP
GVEYMVLRTSAFALKEVYKYPRPTDAVGSRWPRNMVEFRDETDPQARWAE
YEQIDAKDDVDREWSSFMKRMAPIQFTRRKECRLCAGTGKVRCFKCGGVG
SREKFKCDCLKGKRACEWCENS*
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spliced messenger RNA

>Gchil4086.t1 ID=Gchil4086.t1|Name=Gchil4086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004373_pilon:622607..623275- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGCTTCCGGATGATACGGCTCTTGATATGCTATCGTTTGCTCT
CTCCGGTCCTGGAATTGTTGCCACCGCTGCGTTTCTTGTATCTGGAACAG
CTGTTTTATTCTCGTTCGCGGACATTGGACCAAAAAGGGCAAAGTCCTCA
GTATCGTACCTTTTACAAGTCACAGTACCCGCTTCAAGAGCTGTTGAACG
CCCAGATGGCACAGTAGCTCGCCTACGTCAAGGTGAAACAGTACTTCAAT
TCAACTCTCTAGAAGAGTGTACGACGGTCGCTAAGAGACTGGAAGAACCT
GGCGTCGAGTACATGGTACTTCGAACAAGCGCGTTTGCTCTGAAGGAGGT
CTACAAGTACCCAAGACCTACGGACGCTGTCGGCTCGCGATGGCCAAGGA
ATATGGTAGAATTTCGGGACGAAACCGATCCACAAGCGAGATGGGCTGAA
TATGAACAGATAGATGCCAAAGATGATGTGGACAGGGAATGGAGTTCGTT
CATGAAGAGGATGGCACCAATTCAGTTTACGAGGCGAAAAGAATGTCGAC
TTTGCGCCGGGACGGGAAAGGTTAGATGTTTCAAATGTGGTGGAGTGGGT
TCTCGTGAGAAATTCAAATGTGATTGTCTGAAAGGGAAACGGGCGTGCGA
GTGGTGCGAAAACTCTTAA
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protein sequence of Gchil4086.t1

>Gchil4086.t1 ID=Gchil4086.t1|Name=Gchil4086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MTVLPDDTALDMLSFALSGPGIVATAAFLVSGTAVLFSFADIGPKRAKSS
VSYLLQVTVPASRAVERPDGTVARLRQGETVLQFNSLEECTTVAKRLEEP
GVEYMVLRTSAFALKEVYKYPRPTDAVGSRWPRNMVEFRDETDPQARWAE
YEQIDAKDDVDREWSSFMKRMAPIQFTRRKECRLCAGTGKVRCFKCGGVG
SREKFKCDCLKGKRACEWCENS*
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mRNA from alignment at tig00004373_pilon:622607..623275-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4086.t1 ID=Gchil4086.t1|Name=Gchil4086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004373_pilon:622607..623275- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGTGCTTCCGGATGATACGGCTCTTGATATGCTATCGTTTGCTCT
CTCCGGTCCTGGAATTGTTGCCACCGCTGCGTTTCTTGTATCTGGAACAG
CTGTTTTATTCTCGTTCGCGGACATTGGACCAAAAAGGGCAAAGTCCTCA
GTATCGTACCTTTTACAAGTCACAGTACCCGCTTCAAGAGCTGTTGAACG
CCCAGATGGCACAGTAGCTCGCCTACGTCAAGGTGAAACAGTACTTCAAT
TCAACTCTCTAGAAGAGTGTACGACGGTCGCTAAGAGACTGGAAGAACCT
GGCGTCGAGTACATGGTACTTCGAACAAGCGCGTTTGCTCTGAAGGAGGT
CTACAAGTACCCAAGACCTACGGACGCTGTCGGCTCGCGATGGCCAAGGA
ATATGGTAGAATTTCGGGACGAAACCGATCCACAAGCGAGATGGGCTGAA
TATGAACAGATAGATGCCAAAGATGATGTGGACAGGGAATGGAGTTCGTT
CATGAAGAGGATGGCACCAATTCAGTTTACGAGGCGAAAAGAATGTCGAC
TTTGCGCCGGGACGGGAAAGGTTAGATGTTTCAAATGTGGTGGAGTGGGT
TCTCGTGAGAAATTCAAATGTGATTGTCTGAAAGGGAAACGGGCGTGCGA
GTGGTGCGAAAACTCTTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:622607..623275-

>Gchil4086.t1 ID=Gchil4086.t1|Name=Gchil4086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00004373_pilon:622607..623275- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGTGCTTCCGGATGATACGGCTCTTGATATGCTATCGTTTGCTCT
CTCCGGTCCTGGAATTGTTGCCACCGCTGCGTTTCTTGTATCTGGAACAG
CTGTTTTATTCTCGTTCGCGGACATTGGACCAAAAAGGGCAAAGTCCTCA
GTATCGTACCTTTTACAAGTCACAGTACCCGCTTCAAGAGCTGTTGAACG
CCCAGATGGCACAGTAGCTCGCCTACGTCAAGGTGAAACAGTACTTCAAT
TCAACTCTCTAGAAGAGTGTACGACGGTCGCTAAGAGACTGGAAGAACCT
GGCGTCGAGTACATGGTACTTCGAACAAGCGCGTTTGCTCTGAAGGAGGT
CTACAAGTACCCAAGACCTACGGACGCTGTCGGCTCGCGATGGCCAAGGA
ATATGGTAGAATTTCGGGACGAAACCGATCCACAAGCGAGATGGGCTGAA
TATGAACAGATAGATGCCAAAGATGATGTGGACAGGGAATGGAGTTCGTT
CATGAAGAGGATGGCACCAATTCAGTTTACGAGGCGAAAAGAATGTCGAC
TTTGCGCCGGGACGGGAAAGGTTAGATGTTTCAAATGTGGTGGAGTGGGT
TCTCGTGAGAAATTCAAATGTGATTGTCTGAAAGGGAAACGGGCGTGCGA
GTGGTGCGAAAACTCTTAA
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