Gchil4228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4228.t1
Unique Name	Gchil4228.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1571895..1572755 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	981085.XP_010100400.1
PFAMs	DUF4228,Nucleotid_trans,PNISR
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20892
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0034645,GO:0035250,GO:0036211,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070085,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	4.95e-15
EggNOG OGs	2CMQE@1\|root,2QRDX@2759\|Eukaryota,37PIJ@33090\|Viridiplantae,3G9VB@35493\|Streptophyta,4JKNX@91835\|fabids
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4228	Gchil4228	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1571895..1572755 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4228.t1.stop1	Gchil4228.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1571895..1571897 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4228.t1.CDS1	Gchil4228.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1571895..1572755 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4228.t1.exon1	Gchil4228.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1571895..1572755 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4228.t1.start1	Gchil4228.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1572753..1572755 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4228.t1	Gchil4228.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1571895..1572755 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1571895..1572755-
coding sequence from alignment at tig00004373_pilon:1571895..1572755-

mRNA sequence

>Gchil4228.t1 ID=Gchil4228.t1|Name=Gchil4228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MYRHFLHNFKCNLDLLNLRYAPVVYSLDVRTHNLSHRLGLSSVLLSQQLG
DEANPGQFTRDGPRSFNQITKNKLTAVLSALLSGLDVLLSDADIFWCSDP
AHFLQNVLSRWPQYRHADVLIQPEANYRTLNSGFYLVRSNERTLALFRAL
IGNMHIGHHDQDVVNKVFCDPEYGGRKILQPHAQVPYRCQSRGADIRILP
ASTFPSGAQLYAGTNVFQYSRQQLRRMCDDGDFVVVHNNFIKANKKKARL
VVKGMWFASGSEDDLVCQRQPVEADEASIRTCGSYC*

spliced messenger RNA

>Gchil4228.t1 ID=Gchil4228.t1|Name=Gchil4228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004373_pilon:1571895..1572755- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCGCCACTTCCTGCACAACTTCAAGTGCAATCTCGACCTTCTCAA
CCTGCGCTACGCCCCTGTGGTCTACTCGCTTGACGTGCGCACGCACAACC
TCTCGCACCGTCTGGGCTTGTCCTCGGTCCTCCTCTCGCAACAGCTGGGC
GACGAGGCCAATCCCGGCCAGTTTACTCGCGACGGACCGCGATCGTTCAA
TCAAATCACCAAGAACAAACTCACCGCCGTTCTCTCCGCTCTTCTCTCTG
GACTTGACGTCTTGTTGTCTGACGCCGACATTTTTTGGTGCTCTGATCCT
GCCCATTTCTTACAAAACGTTCTTTCCCGCTGGCCGCAGTACAGACACGC
CGATGTGCTTATCCAACCAGAAGCCAATTACCGCACCCTCAATTCTGGCT
TCTATTTGGTGCGATCCAATGAGCGCACGCTGGCCCTTTTCCGCGCTCTC
ATTGGCAACATGCACATCGGTCACCATGACCAAGACGTCGTTAACAAAGT
ATTTTGTGACCCCGAGTACGGAGGCCGCAAAATCCTACAGCCGCACGCAC
AAGTTCCCTACCGCTGTCAAAGTCGAGGCGCCGACATTCGCATCCTTCCT
GCCTCAACCTTCCCTTCTGGAGCTCAGCTCTACGCTGGTACAAACGTGTT
TCAGTACTCTAGACAGCAACTTCGGCGCATGTGCGACGACGGTGACTTTG
TTGTGGTGCACAACAACTTCATCAAGGCGAACAAGAAGAAAGCTAGACTT
GTTGTCAAAGGCATGTGGTTTGCTTCTGGGAGCGAGGATGACCTTGTTTG
CCAACGACAACCCGTAGAAGCCGATGAAGCGTCAATTAGAACGTGCGGTA
GCTATTGTTGA

protein sequence of Gchil4228.t1

>Gchil4228.t1 ID=Gchil4228.t1|Name=Gchil4228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MYRHFLHNFKCNLDLLNLRYAPVVYSLDVRTHNLSHRLGLSSVLLSQQLG
DEANPGQFTRDGPRSFNQITKNKLTAVLSALLSGLDVLLSDADIFWCSDP
AHFLQNVLSRWPQYRHADVLIQPEANYRTLNSGFYLVRSNERTLALFRAL
IGNMHIGHHDQDVVNKVFCDPEYGGRKILQPHAQVPYRCQSRGADIRILP
ASTFPSGAQLYAGTNVFQYSRQQLRRMCDDGDFVVVHNNFIKANKKKARL
VVKGMWFASGSEDDLVCQRQPVEADEASIRTCGSYC*

mRNA from alignment at tig00004373_pilon:1571895..1572755-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4228.t1 ID=Gchil4228.t1|Name=Gchil4228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004373_pilon:1571895..1572755- (Gracilaria chilensis NLEC103_M9 male)
ATGTACCGCCACTTCCTGCACAACTTCAAGTGCAATCTCGACCTTCTCAA
CCTGCGCTACGCCCCTGTGGTCTACTCGCTTGACGTGCGCACGCACAACC
TCTCGCACCGTCTGGGCTTGTCCTCGGTCCTCCTCTCGCAACAGCTGGGC
GACGAGGCCAATCCCGGCCAGTTTACTCGCGACGGACCGCGATCGTTCAA
TCAAATCACCAAGAACAAACTCACCGCCGTTCTCTCCGCTCTTCTCTCTG
GACTTGACGTCTTGTTGTCTGACGCCGACATTTTTTGGTGCTCTGATCCT
GCCCATTTCTTACAAAACGTTCTTTCCCGCTGGCCGCAGTACAGACACGC
CGATGTGCTTATCCAACCAGAAGCCAATTACCGCACCCTCAATTCTGGCT
TCTATTTGGTGCGATCCAATGAGCGCACGCTGGCCCTTTTCCGCGCTCTC
ATTGGCAACATGCACATCGGTCACCATGACCAAGACGTCGTTAACAAAGT
ATTTTGTGACCCCGAGTACGGAGGCCGCAAAATCCTACAGCCGCACGCAC
AAGTTCCCTACCGCTGTCAAAGTCGAGGCGCCGACATTCGCATCCTTCCT
GCCTCAACCTTCCCTTCTGGAGCTCAGCTCTACGCTGGTACAAACGTGTT
TCAGTACTCTAGACAGCAACTTCGGCGCATGTGCGACGACGGTGACTTTG
TTGTGGTGCACAACAACTTCATCAAGGCGAACAAGAAGAAAGCTAGACTT
GTTGTCAAAGGCATGTGGTTTGCTTCTGGGAGCGAGGATGACCTTGTTTG
CCAACGACAACCCGTAGAAGCCGATGAAGCGTCAATTAGAACGTGCGGTA
GCTATTGTTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1571895..1572755-

>Gchil4228.t1 ID=Gchil4228.t1|Name=Gchil4228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00004373_pilon:1571895..1572755- (Gracilaria chilensis NLEC103_M9 male)
ATGTACCGCCACTTCCTGCACAACTTCAAGTGCAATCTCGACCTTCTCAA
CCTGCGCTACGCCCCTGTGGTCTACTCGCTTGACGTGCGCACGCACAACC
TCTCGCACCGTCTGGGCTTGTCCTCGGTCCTCCTCTCGCAACAGCTGGGC
GACGAGGCCAATCCCGGCCAGTTTACTCGCGACGGACCGCGATCGTTCAA
TCAAATCACCAAGAACAAACTCACCGCCGTTCTCTCCGCTCTTCTCTCTG
GACTTGACGTCTTGTTGTCTGACGCCGACATTTTTTGGTGCTCTGATCCT
GCCCATTTCTTACAAAACGTTCTTTCCCGCTGGCCGCAGTACAGACACGC
CGATGTGCTTATCCAACCAGAAGCCAATTACCGCACCCTCAATTCTGGCT
TCTATTTGGTGCGATCCAATGAGCGCACGCTGGCCCTTTTCCGCGCTCTC
ATTGGCAACATGCACATCGGTCACCATGACCAAGACGTCGTTAACAAAGT
ATTTTGTGACCCCGAGTACGGAGGCCGCAAAATCCTACAGCCGCACGCAC
AAGTTCCCTACCGCTGTCAAAGTCGAGGCGCCGACATTCGCATCCTTCCT
GCCTCAACCTTCCCTTCTGGAGCTCAGCTCTACGCTGGTACAAACGTGTT
TCAGTACTCTAGACAGCAACTTCGGCGCATGTGCGACGACGGTGACTTTG
TTGTGGTGCACAACAACTTCATCAAGGCGAACAAGAAGAAAGCTAGACTT
GTTGTCAAAGGCATGTGGTTTGCTTCTGGGAGCGAGGATGACCTTGTTTG
CCAACGACAACCCGTAGAAGCCGATGAAGCGTCAATTAGAACGTGCGGTA
GCTATTGTTGA