Gchil4322.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4322.t1
Unique Name	Gchil4322.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2100696..2101703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703969.1
PFAMs	adh_short
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01008
KEGG ko	ko:K00218
KEGG Reaction	R03845,R06286
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue	5.43e-44
EggNOG OGs	COG1028@1\|root,KOG1208@2759\|Eukaryota
EC	1.3.1.33
Description	oxidation-reduction process
COG category	IQ
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4322	Gchil4322	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2100696..2101703 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4322.t1.start1	Gchil4322.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2100696..2100698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4322.t1.CDS1	Gchil4322.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2100696..2101703 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4322.t1.exon1	Gchil4322.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2100696..2101703 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4322.t1.stop1	Gchil4322.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2101701..2101703 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4322.t1	Gchil4322.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2100696..2101703 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2100696..2101703+
coding sequence from alignment at tig00004373_pilon:2100696..2101703+

mRNA sequence

>Gchil4322.t1 ID=Gchil4322.t1|Name=Gchil4322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp
MPQSTFEYVVGFAKLTLDTLSQRVVNPKYHPHPLFQSDDIYLRDKLSIVT
GANTGIGFQTAHMLAEAGANVVLACRNLNKAQLAANRIRISHPSARVELA
KLDLSDLQSVRKFASDFGDRTCHILVLNAGVMAADQSVPETHFMVNHAAH
ALLSLLLLKNIQQVHGRIVFVSSLTLLISDLHFDDITFANRRYNWMTAYA
NSKLSMVLFMRALHKRIGNNVVLNAVHPGEATSDVARNLGKIWMSLHKEV
GKLFLLSVAESARTTVFVAGAEEAGQGGNLFHRVDQLVTIPPRLVSDADV
ERMWEITLEAASVREGDLDVLNDLMRGKCDVAEQG*

spliced messenger RNA

>Gchil4322.t1 ID=Gchil4322.t1|Name=Gchil4322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00004373_pilon:2100696..2101703+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGAGCACCTTCGAGTATGTAGTCGGCTTCGCAAAGCTCACACT
AGACACTCTTTCACAACGTGTTGTCAATCCAAAATATCATCCTCACCCCC
TCTTTCAATCCGATGACATCTACCTCCGCGACAAACTTTCCATTGTAACT
GGGGCAAACACTGGAATCGGTTTCCAAACCGCTCACATGTTGGCGGAAGC
AGGTGCTAACGTAGTGCTCGCGTGCAGGAATTTGAACAAAGCACAACTGG
CGGCGAATAGAATTCGAATATCACACCCAAGCGCCCGCGTTGAACTAGCC
AAACTTGATCTTTCTGACTTACAATCTGTGCGGAAGTTTGCGAGTGATTT
TGGCGATAGGACGTGTCATATTCTTGTCCTAAACGCCGGCGTTATGGCTG
CTGATCAATCTGTACCTGAAACGCATTTTATGGTGAATCACGCGGCACAT
GCGTTGTTATCCCTGTTACTGTTGAAAAATATCCAACAGGTTCATGGACG
TATTGTTTTCGTATCGAGTCTCACACTGTTGATTTCCGATCTTCATTTCG
ATGATATTACCTTTGCGAATCGTCGATACAACTGGATGACAGCATATGCC
AACAGCAAGTTGAGTATGGTTTTATTTATGCGGGCTCTCCACAAACGTAT
TGGAAACAATGTGGTGTTAAATGCGGTACATCCAGGGGAAGCTACTTCAG
ACGTTGCGAGAAATCTAGGAAAGATTTGGATGTCGCTACACAAAGAAGTT
GGCAAACTGTTTTTGCTTTCTGTGGCTGAATCCGCTCGGACCACAGTGTT
CGTTGCGGGCGCTGAAGAAGCAGGACAAGGTGGTAATCTTTTTCATCGTG
TTGATCAACTTGTTACCATCCCGCCACGACTTGTTTCCGATGCGGATGTG
GAACGTATGTGGGAGATCACGTTAGAAGCCGCAAGCGTAAGGGAAGGTGA
TCTCGATGTTCTGAATGACTTGATGCGCGGTAAATGCGATGTTGCAGAAC
AAGGGTGA

protein sequence of Gchil4322.t1

>Gchil4322.t1 ID=Gchil4322.t1|Name=Gchil4322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=336bp
MPQSTFEYVVGFAKLTLDTLSQRVVNPKYHPHPLFQSDDIYLRDKLSIVT
GANTGIGFQTAHMLAEAGANVVLACRNLNKAQLAANRIRISHPSARVELA
KLDLSDLQSVRKFASDFGDRTCHILVLNAGVMAADQSVPETHFMVNHAAH
ALLSLLLLKNIQQVHGRIVFVSSLTLLISDLHFDDITFANRRYNWMTAYA
NSKLSMVLFMRALHKRIGNNVVLNAVHPGEATSDVARNLGKIWMSLHKEV
GKLFLLSVAESARTTVFVAGAEEAGQGGNLFHRVDQLVTIPPRLVSDADV
ERMWEITLEAASVREGDLDVLNDLMRGKCDVAEQG*

mRNA from alignment at tig00004373_pilon:2100696..2101703+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4322.t1 ID=Gchil4322.t1|Name=Gchil4322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00004373_pilon:2100696..2101703+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCAGAGCACCTTCGAGTATGTAGTCGGCTTCGCAAAGCTCACACT
AGACACTCTTTCACAACGTGTTGTCAATCCAAAATATCATCCTCACCCCC
TCTTTCAATCCGATGACATCTACCTCCGCGACAAACTTTCCATTGTAACT
GGGGCAAACACTGGAATCGGTTTCCAAACCGCTCACATGTTGGCGGAAGC
AGGTGCTAACGTAGTGCTCGCGTGCAGGAATTTGAACAAAGCACAACTGG
CGGCGAATAGAATTCGAATATCACACCCAAGCGCCCGCGTTGAACTAGCC
AAACTTGATCTTTCTGACTTACAATCTGTGCGGAAGTTTGCGAGTGATTT
TGGCGATAGGACGTGTCATATTCTTGTCCTAAACGCCGGCGTTATGGCTG
CTGATCAATCTGTACCTGAAACGCATTTTATGGTGAATCACGCGGCACAT
GCGTTGTTATCCCTGTTACTGTTGAAAAATATCCAACAGGTTCATGGACG
TATTGTTTTCGTATCGAGTCTCACACTGTTGATTTCCGATCTTCATTTCG
ATGATATTACCTTTGCGAATCGTCGATACAACTGGATGACAGCATATGCC
AACAGCAAGTTGAGTATGGTTTTATTTATGCGGGCTCTCCACAAACGTAT
TGGAAACAATGTGGTGTTAAATGCGGTACATCCAGGGGAAGCTACTTCAG
ACGTTGCGAGAAATCTAGGAAAGATTTGGATGTCGCTACACAAAGAAGTT
GGCAAACTGTTTTTGCTTTCTGTGGCTGAATCCGCTCGGACCACAGTGTT
CGTTGCGGGCGCTGAAGAAGCAGGACAAGGTGGTAATCTTTTTCATCGTG
TTGATCAACTTGTTACCATCCCGCCACGACTTGTTTCCGATGCGGATGTG
GAACGTATGTGGGAGATCACGTTAGAAGCCGCAAGCGTAAGGGAAGGTGA
TCTCGATGTTCTGAATGACTTGATGCGCGGTAAATGCGATGTTGCAGAAC
AAGGGTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:2100696..2101703+

>Gchil4322.t1 ID=Gchil4322.t1|Name=Gchil4322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00004373_pilon:2100696..2101703+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCAGAGCACCTTCGAGTATGTAGTCGGCTTCGCAAAGCTCACACT
AGACACTCTTTCACAACGTGTTGTCAATCCAAAATATCATCCTCACCCCC
TCTTTCAATCCGATGACATCTACCTCCGCGACAAACTTTCCATTGTAACT
GGGGCAAACACTGGAATCGGTTTCCAAACCGCTCACATGTTGGCGGAAGC
AGGTGCTAACGTAGTGCTCGCGTGCAGGAATTTGAACAAAGCACAACTGG
CGGCGAATAGAATTCGAATATCACACCCAAGCGCCCGCGTTGAACTAGCC
AAACTTGATCTTTCTGACTTACAATCTGTGCGGAAGTTTGCGAGTGATTT
TGGCGATAGGACGTGTCATATTCTTGTCCTAAACGCCGGCGTTATGGCTG
CTGATCAATCTGTACCTGAAACGCATTTTATGGTGAATCACGCGGCACAT
GCGTTGTTATCCCTGTTACTGTTGAAAAATATCCAACAGGTTCATGGACG
TATTGTTTTCGTATCGAGTCTCACACTGTTGATTTCCGATCTTCATTTCG
ATGATATTACCTTTGCGAATCGTCGATACAACTGGATGACAGCATATGCC
AACAGCAAGTTGAGTATGGTTTTATTTATGCGGGCTCTCCACAAACGTAT
TGGAAACAATGTGGTGTTAAATGCGGTACATCCAGGGGAAGCTACTTCAG
ACGTTGCGAGAAATCTAGGAAAGATTTGGATGTCGCTACACAAAGAAGTT
GGCAAACTGTTTTTGCTTTCTGTGGCTGAATCCGCTCGGACCACAGTGTT
CGTTGCGGGCGCTGAAGAAGCAGGACAAGGTGGTAATCTTTTTCATCGTG
TTGATCAACTTGTTACCATCCCGCCACGACTTGTTTCCGATGCGGATGTG
GAACGTATGTGGGAGATCACGTTAGAAGCCGCAAGCGTAAGGGAAGGTGA
TCTCGATGTTCTGAATGACTTGATGCGCGGTAAATGCGATGTTGCAGAAC
AAGGGTGA