Gchil3852.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3852.t1
Unique NameGchil3852.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1001076..1002596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1469607.KK073769_gene5063
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046,RC03365
KEGG koko:K00486,ko:K20090
KEGG ReactionR01960,R11132,R11135,R11373,R11374
KEGG Pathwayko00380,ko00404,ko01100,ko01130,ko02024,map00380,map00404,map01100,map01130,map02024
KEGG ModuleM00038,M00808
Evalue1.13e-23
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G25R@1117|Cyanobacteria,1HIYQ@1161|Nostocales
EC1.14.13.224,1.14.13.9
DescriptionKynurenine 3-monooxygenase
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3852Gchil3852Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1001076..1002596 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3852.t1.start1Gchil3852.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1001076..1001078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3852.t1.CDS1Gchil3852.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1001076..1002596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3852.t1.exon1Gchil3852.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1001076..1002596 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3852.t1.stop1Gchil3852.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1002594..1002596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3852.t1Gchil3852.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1001076..1002596 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3852.t1 ID=Gchil3852.t1|Name=Gchil3852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp
MTLPVNQNGTAQGTIPNSIRHANTVIVGGGPTGLLAAILLAQRNITVTIV
EQDDEISRFDPSRMYTIGLNERGRKVLQQVPELLRSIAERSVSFRNQLLV
TCKPDGTYKSFKILSPPSDGGVYVLCTRISLVEGLQSYAKKNGKIKLMKR
TRVTKVVYDAQGEIQLFLDCEGRESSIRSKLILACDGRRSFISESMRTSN
EHNGNLFRSSNGLGEDSVPTATSGRIIKSIALQETYNKKEPCFQDNLADF
TVFRRFLPRRGVSDKKDIWIGIFDMPKAMQDRCGGVMGIVSGSPRTKLCD
LKTAEEGYKLFEEILPQLNARSCISSKSMKRFVEAKPIRLPPSSRVESLV
VHVGGAPSAGVVFLGDAAHSFPPDTGQGMNAAFEDVQTLMQVLDGMDVNT
SIENTLREYEAVRDEDLRALTTIVRSVSTFSGASSVGLALRIWDRKLRGF
LAKKFPGVLYPSMLEAIGKNYAYRDALRFHKLTTTRLVASGAVLAILGSL
VFHAAL*
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spliced messenger RNA

>Gchil3852.t1 ID=Gchil3852.t1|Name=Gchil3852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000010_pilon:1001076..1002596+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTGCCAGTAAACCAAAATGGTACTGCACAGGGTACAATCCCAAA
CTCAATTCGACATGCAAATACGGTGATTGTGGGTGGTGGACCCACTGGAC
TCCTTGCTGCAATTTTATTGGCGCAACGCAACATTACGGTCACAATTGTG
GAGCAAGACGATGAAATCAGCCGTTTTGATCCCTCTAGAATGTACACAAT
TGGATTGAATGAACGTGGGCGTAAAGTATTACAGCAGGTGCCAGAACTGT
TGCGGAGCATTGCAGAACGTTCCGTTTCTTTCAGAAACCAACTACTCGTT
ACATGCAAACCGGATGGTACGTACAAGAGCTTCAAGATTCTCTCTCCTCC
GTCAGACGGCGGTGTGTATGTTCTGTGCACCAGAATTTCTTTAGTGGAGG
GACTCCAATCATATGCCAAAAAAAATGGAAAGATCAAGTTGATGAAGAGA
ACCAGAGTAACTAAAGTGGTCTACGACGCACAGGGGGAAATACAACTTTT
TTTGGATTGTGAGGGACGGGAATCTAGCATTCGATCCAAGCTTATTCTTG
CATGTGATGGACGTAGAAGTTTTATTAGTGAATCAATGAGGACATCAAAC
GAGCACAATGGAAATCTGTTCCGGAGCTCAAACGGACTAGGAGAGGATTC
GGTCCCGACGGCGACAAGCGGACGGATTATCAAATCGATTGCATTGCAGG
AAACGTACAATAAAAAAGAACCTTGCTTCCAGGACAATCTTGCTGACTTT
ACTGTGTTCCGAAGATTTCTCCCTAGGCGAGGGGTTTCTGATAAGAAGGA
TATCTGGATTGGCATATTTGATATGCCCAAAGCAATGCAAGATCGTTGTG
GTGGAGTAATGGGAATTGTTTCAGGTTCGCCTCGGACAAAATTGTGCGAT
CTAAAGACGGCTGAGGAAGGTTATAAATTGTTTGAGGAAATTCTACCACA
GCTAAACGCTCGATCGTGCATTTCCTCTAAGAGCATGAAGAGATTCGTTG
AAGCTAAACCAATAAGGCTCCCACCCTCGTCTCGTGTCGAGTCGTTAGTA
GTACATGTTGGTGGTGCTCCGTCAGCCGGAGTCGTGTTCCTAGGAGACGC
CGCGCACTCCTTTCCACCGGACACTGGACAAGGCATGAACGCAGCCTTCG
AGGATGTACAGACACTGATGCAAGTTTTGGACGGGATGGACGTAAACACC
AGTATTGAAAACACCTTGCGTGAATACGAGGCGGTACGAGATGAAGACCT
GAGAGCGTTGACAACTATCGTTCGCAGCGTATCTACTTTTTCCGGGGCCT
CTTCCGTTGGTCTTGCGCTTCGGATATGGGACAGGAAACTGAGAGGTTTT
TTGGCCAAGAAGTTCCCCGGAGTGCTCTATCCCAGCATGCTTGAAGCCAT
AGGAAAGAACTATGCGTACCGAGATGCGTTACGGTTTCACAAGCTGACCA
CAACCAGGTTGGTAGCCTCAGGTGCCGTGCTAGCAATACTGGGGAGTCTG
GTTTTTCATGCAGCTTTGTAA
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protein sequence of Gchil3852.t1

>Gchil3852.t1 ID=Gchil3852.t1|Name=Gchil3852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=507bp
MTLPVNQNGTAQGTIPNSIRHANTVIVGGGPTGLLAAILLAQRNITVTIV
EQDDEISRFDPSRMYTIGLNERGRKVLQQVPELLRSIAERSVSFRNQLLV
TCKPDGTYKSFKILSPPSDGGVYVLCTRISLVEGLQSYAKKNGKIKLMKR
TRVTKVVYDAQGEIQLFLDCEGRESSIRSKLILACDGRRSFISESMRTSN
EHNGNLFRSSNGLGEDSVPTATSGRIIKSIALQETYNKKEPCFQDNLADF
TVFRRFLPRRGVSDKKDIWIGIFDMPKAMQDRCGGVMGIVSGSPRTKLCD
LKTAEEGYKLFEEILPQLNARSCISSKSMKRFVEAKPIRLPPSSRVESLV
VHVGGAPSAGVVFLGDAAHSFPPDTGQGMNAAFEDVQTLMQVLDGMDVNT
SIENTLREYEAVRDEDLRALTTIVRSVSTFSGASSVGLALRIWDRKLRGF
LAKKFPGVLYPSMLEAIGKNYAYRDALRFHKLTTTRLVASGAVLAILGSL
VFHAAL*
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mRNA from alignment at tig00000010_pilon:1001076..1002596+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3852.t1 ID=Gchil3852.t1|Name=Gchil3852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000010_pilon:1001076..1002596+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATTGCCAGTAAACCAAAATGGTACTGCACAGGGTACAATCCCAAA
CTCAATTCGACATGCAAATACGGTGATTGTGGGTGGTGGACCCACTGGAC
TCCTTGCTGCAATTTTATTGGCGCAACGCAACATTACGGTCACAATTGTG
GAGCAAGACGATGAAATCAGCCGTTTTGATCCCTCTAGAATGTACACAAT
TGGATTGAATGAACGTGGGCGTAAAGTATTACAGCAGGTGCCAGAACTGT
TGCGGAGCATTGCAGAACGTTCCGTTTCTTTCAGAAACCAACTACTCGTT
ACATGCAAACCGGATGGTACGTACAAGAGCTTCAAGATTCTCTCTCCTCC
GTCAGACGGCGGTGTGTATGTTCTGTGCACCAGAATTTCTTTAGTGGAGG
GACTCCAATCATATGCCAAAAAAAATGGAAAGATCAAGTTGATGAAGAGA
ACCAGAGTAACTAAAGTGGTCTACGACGCACAGGGGGAAATACAACTTTT
TTTGGATTGTGAGGGACGGGAATCTAGCATTCGATCCAAGCTTATTCTTG
CATGTGATGGACGTAGAAGTTTTATTAGTGAATCAATGAGGACATCAAAC
GAGCACAATGGAAATCTGTTCCGGAGCTCAAACGGACTAGGAGAGGATTC
GGTCCCGACGGCGACAAGCGGACGGATTATCAAATCGATTGCATTGCAGG
AAACGTACAATAAAAAAGAACCTTGCTTCCAGGACAATCTTGCTGACTTT
ACTGTGTTCCGAAGATTTCTCCCTAGGCGAGGGGTTTCTGATAAGAAGGA
TATCTGGATTGGCATATTTGATATGCCCAAAGCAATGCAAGATCGTTGTG
GTGGAGTAATGGGAATTGTTTCAGGTTCGCCTCGGACAAAATTGTGCGAT
CTAAAGACGGCTGAGGAAGGTTATAAATTGTTTGAGGAAATTCTACCACA
GCTAAACGCTCGATCGTGCATTTCCTCTAAGAGCATGAAGAGATTCGTTG
AAGCTAAACCAATAAGGCTCCCACCCTCGTCTCGTGTCGAGTCGTTAGTA
GTACATGTTGGTGGTGCTCCGTCAGCCGGAGTCGTGTTCCTAGGAGACGC
CGCGCACTCCTTTCCACCGGACACTGGACAAGGCATGAACGCAGCCTTCG
AGGATGTACAGACACTGATGCAAGTTTTGGACGGGATGGACGTAAACACC
AGTATTGAAAACACCTTGCGTGAATACGAGGCGGTACGAGATGAAGACCT
GAGAGCGTTGACAACTATCGTTCGCAGCGTATCTACTTTTTCCGGGGCCT
CTTCCGTTGGTCTTGCGCTTCGGATATGGGACAGGAAACTGAGAGGTTTT
TTGGCCAAGAAGTTCCCCGGAGTGCTCTATCCCAGCATGCTTGAAGCCAT
AGGAAAGAACTATGCGTACCGAGATGCGTTACGGTTTCACAAGCTGACCA
CAACCAGGTTGGTAGCCTCAGGTGCCGTGCTAGCAATACTGGGGAGTCTG
GTTTTTCATGCAGCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1001076..1002596+

>Gchil3852.t1 ID=Gchil3852.t1|Name=Gchil3852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000010_pilon:1001076..1002596+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATTGCCAGTAAACCAAAATGGTACTGCACAGGGTACAATCCCAAA
CTCAATTCGACATGCAAATACGGTGATTGTGGGTGGTGGACCCACTGGAC
TCCTTGCTGCAATTTTATTGGCGCAACGCAACATTACGGTCACAATTGTG
GAGCAAGACGATGAAATCAGCCGTTTTGATCCCTCTAGAATGTACACAAT
TGGATTGAATGAACGTGGGCGTAAAGTATTACAGCAGGTGCCAGAACTGT
TGCGGAGCATTGCAGAACGTTCCGTTTCTTTCAGAAACCAACTACTCGTT
ACATGCAAACCGGATGGTACGTACAAGAGCTTCAAGATTCTCTCTCCTCC
GTCAGACGGCGGTGTGTATGTTCTGTGCACCAGAATTTCTTTAGTGGAGG
GACTCCAATCATATGCCAAAAAAAATGGAAAGATCAAGTTGATGAAGAGA
ACCAGAGTAACTAAAGTGGTCTACGACGCACAGGGGGAAATACAACTTTT
TTTGGATTGTGAGGGACGGGAATCTAGCATTCGATCCAAGCTTATTCTTG
CATGTGATGGACGTAGAAGTTTTATTAGTGAATCAATGAGGACATCAAAC
GAGCACAATGGAAATCTGTTCCGGAGCTCAAACGGACTAGGAGAGGATTC
GGTCCCGACGGCGACAAGCGGACGGATTATCAAATCGATTGCATTGCAGG
AAACGTACAATAAAAAAGAACCTTGCTTCCAGGACAATCTTGCTGACTTT
ACTGTGTTCCGAAGATTTCTCCCTAGGCGAGGGGTTTCTGATAAGAAGGA
TATCTGGATTGGCATATTTGATATGCCCAAAGCAATGCAAGATCGTTGTG
GTGGAGTAATGGGAATTGTTTCAGGTTCGCCTCGGACAAAATTGTGCGAT
CTAAAGACGGCTGAGGAAGGTTATAAATTGTTTGAGGAAATTCTACCACA
GCTAAACGCTCGATCGTGCATTTCCTCTAAGAGCATGAAGAGATTCGTTG
AAGCTAAACCAATAAGGCTCCCACCCTCGTCTCGTGTCGAGTCGTTAGTA
GTACATGTTGGTGGTGCTCCGTCAGCCGGAGTCGTGTTCCTAGGAGACGC
CGCGCACTCCTTTCCACCGGACACTGGACAAGGCATGAACGCAGCCTTCG
AGGATGTACAGACACTGATGCAAGTTTTGGACGGGATGGACGTAAACACC
AGTATTGAAAACACCTTGCGTGAATACGAGGCGGTACGAGATGAAGACCT
GAGAGCGTTGACAACTATCGTTCGCAGCGTATCTACTTTTTCCGGGGCCT
CTTCCGTTGGTCTTGCGCTTCGGATATGGGACAGGAAACTGAGAGGTTTT
TTGGCCAAGAAGTTCCCCGGAGTGCTCTATCCCAGCATGCTTGAAGCCAT
AGGAAAGAACTATGCGTACCGAGATGCGTTACGGTTTCACAAGCTGACCA
CAACCAGGTTGGTAGCCTCAGGTGCCGTGCTAGCAATACTGGGGAGTCTG
GTTTTTCATGCAGCTTTGTAA
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