Gchil4126.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4126.t1
Unique NameGchil4126.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:919722..920126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP09285
PFAMsRhodanese
Max annot lvl3041|Chlorophyta
KEGG koko:K18065
KEGG ModuleM00693
Evalue1.65e-22
EggNOG OGsCOG5105@1|root,KOG3772@2759|Eukaryota,38AGY@33090|Viridiplantae,34P1Q@3041|Chlorophyta
EC3.1.3.48
DescriptionRhodanese Homology Domain
COG categoryD
BRITEko00000,ko00002,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4126Gchil4126Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 919722..920126 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4126.t1.start1Gchil4126.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 919722..919724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4126.t1.CDS1Gchil4126.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 919722..920126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4126.t1.exon1Gchil4126.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 919722..920126 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4126.t1.stop1Gchil4126.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 920124..920126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4126.t1Gchil4126.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 919722..920126 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4126.t1 ID=Gchil4126.t1|Name=Gchil4126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=135bp
MTGPSYISKETLASMLRSSKPPVVIDVREHDRIGGHIKSSIHAPAPDFRR
DPSRYLKCINGADTVVFHCMYSQLRGPTCAVRFWYALDSARKEGRLQNVP
EVVILEDGFAGFVRGNKFPDDLIEEFDRTYHPSS*
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spliced messenger RNA

>Gchil4126.t1 ID=Gchil4126.t1|Name=Gchil4126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004373_pilon:919722..920126+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGTCCGTCGTATATCTCAAAGGAGACTCTTGCCTCCATGTTGCG
TTCGTCCAAGCCGCCGGTCGTCATAGACGTTCGCGAGCACGACAGGATTG
GCGGTCACATCAAATCTTCCATACACGCCCCGGCGCCTGACTTTCGCCGT
GATCCCTCCCGTTACCTCAAGTGCATCAACGGCGCCGACACTGTCGTTTT
CCACTGCATGTATTCCCAGCTCAGAGGACCCACGTGTGCCGTTCGCTTCT
GGTACGCCCTGGATAGCGCCCGCAAGGAAGGTCGGTTGCAAAACGTCCCG
GAGGTCGTCATATTGGAAGATGGTTTCGCAGGCTTTGTCCGGGGAAACAA
GTTCCCCGATGACCTCATAGAAGAATTTGATCGTACATATCACCCCTCCT
CATGA
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protein sequence of Gchil4126.t1

>Gchil4126.t1 ID=Gchil4126.t1|Name=Gchil4126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=135bp
MTGPSYISKETLASMLRSSKPPVVIDVREHDRIGGHIKSSIHAPAPDFRR
DPSRYLKCINGADTVVFHCMYSQLRGPTCAVRFWYALDSARKEGRLQNVP
EVVILEDGFAGFVRGNKFPDDLIEEFDRTYHPSS*
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mRNA from alignment at tig00004373_pilon:919722..920126+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4126.t1 ID=Gchil4126.t1|Name=Gchil4126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00004373_pilon:919722..920126+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGTCCGTCGTATATCTCAAAGGAGACTCTTGCCTCCATGTTGCG
TTCGTCCAAGCCGCCGGTCGTCATAGACGTTCGCGAGCACGACAGGATTG
GCGGTCACATCAAATCTTCCATACACGCCCCGGCGCCTGACTTTCGCCGT
GATCCCTCCCGTTACCTCAAGTGCATCAACGGCGCCGACACTGTCGTTTT
CCACTGCATGTATTCCCAGCTCAGAGGACCCACGTGTGCCGTTCGCTTCT
GGTACGCCCTGGATAGCGCCCGCAAGGAAGGTCGGTTGCAAAACGTCCCG
GAGGTCGTCATATTGGAAGATGGTTTCGCAGGCTTTGTCCGGGGAAACAA
GTTCCCCGATGACCTCATAGAAGAATTTGATCGTACATATCACCCCTCCT
CATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:919722..920126+

>Gchil4126.t1 ID=Gchil4126.t1|Name=Gchil4126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00004373_pilon:919722..920126+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGTCCGTCGTATATCTCAAAGGAGACTCTTGCCTCCATGTTGCG
TTCGTCCAAGCCGCCGGTCGTCATAGACGTTCGCGAGCACGACAGGATTG
GCGGTCACATCAAATCTTCCATACACGCCCCGGCGCCTGACTTTCGCCGT
GATCCCTCCCGTTACCTCAAGTGCATCAACGGCGCCGACACTGTCGTTTT
CCACTGCATGTATTCCCAGCTCAGAGGACCCACGTGTGCCGTTCGCTTCT
GGTACGCCCTGGATAGCGCCCGCAAGGAAGGTCGGTTGCAAAACGTCCCG
GAGGTCGTCATATTGGAAGATGGTTTCGCAGGCTTTGTCCGGGGAAACAA
GTTCCCCGATGACCTCATAGAAGAATTTGATCGTACATATCACCCCTCCT
CATGA
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