Gchil4125.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4125.t1
Unique NameGchil4125.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:890680..891678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1380393.JHVP01000010_gene2984
Preferred namerbsK
PFAMsPfkB
Max annot lvl201174|Actinobacteria
KEGG rclassRC00002,RC00017
KEGG koko:K00852
KEGG ReactionR01051,R02750
KEGG Pathwayko00030,map00030
Evalue2.76e-42
EggNOG OGsCOG0524@1|root,COG0524@2|Bacteria,2I04R@201174|Actinobacteria,4ET61@85013|Frankiales
EC2.7.1.15
DescriptionCatalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4125Gchil4125Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 890680..891678 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4125.t1.stop1Gchil4125.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 890680..890682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4125.t1.CDS1Gchil4125.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 890680..891678 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4125.t1.exon1Gchil4125.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 890680..891678 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4125.t1.start1Gchil4125.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 891676..891678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4125.t1Gchil4125.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 890680..891678 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4125.t1 ID=Gchil4125.t1|Name=Gchil4125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp
MERKHVIVISSINQDMSLTVEALPTGGETVLAHSMNQSLGGKGANTAVAA
AKSQLAKRVHLVAAVGRDGGALLGTLQHHAVDVSQVSVLERGTTGMAVVL
VEARTGENMVVVVPAANHALSAACLGRIHHLLPRAVVVLHLEIARQVAEQ
AAEVAHSNGAMVVFNASPLPTPACVARSTSAALWRHADVLVVNQHELQQL
SNAALRVDDDASDTAVTAMCARAINALWTRDAPRARAVVGTLGARGAVMK
MGDDEAQLVRAPKPPSVVDTTGAGDTFTGYLAAALCAGKPLAAAVRTAVA
AATLSVARRGAADGVPDRAAVDALLHTASAWL*
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spliced messenger RNA

>Gchil4125.t1 ID=Gchil4125.t1|Name=Gchil4125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004373_pilon:890680..891678- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCAAGCACGTGATTGTGATTTCATCCATCAACCAAGACATGTC
GCTGACGGTGGAAGCGCTGCCCACGGGCGGCGAGACGGTGCTGGCGCACA
GCATGAATCAATCGCTGGGCGGCAAGGGCGCCAACACAGCAGTGGCAGCG
GCCAAGTCGCAGTTAGCGAAGCGCGTGCATTTGGTAGCGGCTGTAGGCCG
CGACGGCGGCGCACTACTCGGCACGCTGCAGCACCACGCTGTGGACGTGT
CGCAAGTGAGCGTGTTGGAGCGCGGCACAACCGGTATGGCGGTCGTGCTC
GTGGAGGCGCGCACCGGCGAAAACATGGTCGTTGTCGTGCCCGCCGCCAA
CCACGCACTGAGCGCGGCATGTCTGGGCCGCATACATCACCTTCTGCCGC
GCGCAGTGGTGGTACTACACCTCGAAATTGCACGGCAAGTCGCTGAGCAA
GCGGCCGAAGTGGCGCACAGCAACGGCGCCATGGTCGTGTTCAACGCCAG
CCCGCTCCCGACGCCGGCGTGCGTGGCGCGCAGCACCAGCGCAGCGCTGT
GGCGTCACGCAGACGTACTCGTGGTGAACCAGCACGAACTACAGCAACTG
AGCAACGCAGCGCTACGTGTGGACGACGACGCCAGCGACACGGCCGTGAC
GGCGATGTGCGCGCGCGCCATAAACGCGCTTTGGACGCGCGACGCACCGC
GCGCACGCGCCGTGGTGGGCACGCTGGGCGCGCGCGGCGCGGTGATGAAG
ATGGGCGACGATGAGGCGCAACTGGTGCGCGCTCCGAAGCCGCCGTCCGT
CGTGGACACCACTGGCGCTGGCGATACGTTCACGGGTTACTTGGCGGCCG
CGCTGTGCGCTGGCAAGCCGCTTGCGGCTGCTGTGCGTACCGCCGTCGCC
GCCGCCACGCTCAGCGTGGCGCGTCGCGGAGCTGCCGATGGCGTGCCCGA
TCGCGCCGCCGTCGACGCGCTGCTGCACACCGCCAGCGCCTGGCTGTGA
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protein sequence of Gchil4125.t1

>Gchil4125.t1 ID=Gchil4125.t1|Name=Gchil4125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MERKHVIVISSINQDMSLTVEALPTGGETVLAHSMNQSLGGKGANTAVAA
AKSQLAKRVHLVAAVGRDGGALLGTLQHHAVDVSQVSVLERGTTGMAVVL
VEARTGENMVVVVPAANHALSAACLGRIHHLLPRAVVVLHLEIARQVAEQ
AAEVAHSNGAMVVFNASPLPTPACVARSTSAALWRHADVLVVNQHELQQL
SNAALRVDDDASDTAVTAMCARAINALWTRDAPRARAVVGTLGARGAVMK
MGDDEAQLVRAPKPPSVVDTTGAGDTFTGYLAAALCAGKPLAAAVRTAVA
AATLSVARRGAADGVPDRAAVDALLHTASAWL*
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mRNA from alignment at tig00004373_pilon:890680..891678-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4125.t1 ID=Gchil4125.t1|Name=Gchil4125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004373_pilon:890680..891678- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCAAGCACGTGATTGTGATTTCATCCATCAACCAAGACATGTC
GCTGACGGTGGAAGCGCTGCCCACGGGCGGCGAGACGGTGCTGGCGCACA
GCATGAATCAATCGCTGGGCGGCAAGGGCGCCAACACAGCAGTGGCAGCG
GCCAAGTCGCAGTTAGCGAAGCGCGTGCATTTGGTAGCGGCTGTAGGCCG
CGACGGCGGCGCACTACTCGGCACGCTGCAGCACCACGCTGTGGACGTGT
CGCAAGTGAGCGTGTTGGAGCGCGGCACAACCGGTATGGCGGTCGTGCTC
GTGGAGGCGCGCACCGGCGAAAACATGGTCGTTGTCGTGCCCGCCGCCAA
CCACGCACTGAGCGCGGCATGTCTGGGCCGCATACATCACCTTCTGCCGC
GCGCAGTGGTGGTACTACACCTCGAAATTGCACGGCAAGTCGCTGAGCAA
GCGGCCGAAGTGGCGCACAGCAACGGCGCCATGGTCGTGTTCAACGCCAG
CCCGCTCCCGACGCCGGCGTGCGTGGCGCGCAGCACCAGCGCAGCGCTGT
GGCGTCACGCAGACGTACTCGTGGTGAACCAGCACGAACTACAGCAACTG
AGCAACGCAGCGCTACGTGTGGACGACGACGCCAGCGACACGGCCGTGAC
GGCGATGTGCGCGCGCGCCATAAACGCGCTTTGGACGCGCGACGCACCGC
GCGCACGCGCCGTGGTGGGCACGCTGGGCGCGCGCGGCGCGGTGATGAAG
ATGGGCGACGATGAGGCGCAACTGGTGCGCGCTCCGAAGCCGCCGTCCGT
CGTGGACACCACTGGCGCTGGCGATACGTTCACGGGTTACTTGGCGGCCG
CGCTGTGCGCTGGCAAGCCGCTTGCGGCTGCTGTGCGTACCGCCGTCGCC
GCCGCCACGCTCAGCGTGGCGCGTCGCGGAGCTGCCGATGGCGTGCCCGA
TCGCGCCGCCGTCGACGCGCTGCTGCACACCGCCAGCGCCTGGCTGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:890680..891678-

>Gchil4125.t1 ID=Gchil4125.t1|Name=Gchil4125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00004373_pilon:890680..891678- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCAAGCACGTGATTGTGATTTCATCCATCAACCAAGACATGTC
GCTGACGGTGGAAGCGCTGCCCACGGGCGGCGAGACGGTGCTGGCGCACA
GCATGAATCAATCGCTGGGCGGCAAGGGCGCCAACACAGCAGTGGCAGCG
GCCAAGTCGCAGTTAGCGAAGCGCGTGCATTTGGTAGCGGCTGTAGGCCG
CGACGGCGGCGCACTACTCGGCACGCTGCAGCACCACGCTGTGGACGTGT
CGCAAGTGAGCGTGTTGGAGCGCGGCACAACCGGTATGGCGGTCGTGCTC
GTGGAGGCGCGCACCGGCGAAAACATGGTCGTTGTCGTGCCCGCCGCCAA
CCACGCACTGAGCGCGGCATGTCTGGGCCGCATACATCACCTTCTGCCGC
GCGCAGTGGTGGTACTACACCTCGAAATTGCACGGCAAGTCGCTGAGCAA
GCGGCCGAAGTGGCGCACAGCAACGGCGCCATGGTCGTGTTCAACGCCAG
CCCGCTCCCGACGCCGGCGTGCGTGGCGCGCAGCACCAGCGCAGCGCTGT
GGCGTCACGCAGACGTACTCGTGGTGAACCAGCACGAACTACAGCAACTG
AGCAACGCAGCGCTACGTGTGGACGACGACGCCAGCGACACGGCCGTGAC
GGCGATGTGCGCGCGCGCCATAAACGCGCTTTGGACGCGCGACGCACCGC
GCGCACGCGCCGTGGTGGGCACGCTGGGCGCGCGCGGCGCGGTGATGAAG
ATGGGCGACGATGAGGCGCAACTGGTGCGCGCTCCGAAGCCGCCGTCCGT
CGTGGACACCACTGGCGCTGGCGATACGTTCACGGGTTACTTGGCGGCCG
CGCTGTGCGCTGGCAAGCCGCTTGCGGCTGCTGTGCGTACCGCCGTCGCC
GCCGCCACGCTCAGCGTGGCGCGTCGCGGAGCTGCCGATGGCGTGCCCGA
TCGCGCCGCCGTCGACGCGCTGCTGCACACCGCCAGCGCCTGGCTGTGA
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