Gchil4225.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4225.t1
Unique NameGchil4225.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1566324..1566983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000009273
Preferred nameSEC11C
PFAMsPeptidase_S24
Max annot lvl33208|Metazoa
KEGG koko:K13280
KEGG Pathwayko03060,map03060
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0034641,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0071704,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Evalue3.24e-57
EggNOG OGsCOG0681@1|root,KOG3342@2759|Eukaryota,38Y2A@33154|Opisthokonta,3BF7K@33208|Metazoa,3CR9T@33213|Bilateria,4808V@7711|Chordata
EC3.4.21.89
Descriptionsignal peptide processing
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4225Gchil4225Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1566324..1566983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1Gchil4225.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1566324..1566983 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1.start1Gchil4225.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1566324..1566326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1.CDS1Gchil4225.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1566324..1566389 +
Gchil4225.t1.CDS2Gchil4225.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1566492..1566983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1.exon1Gchil4225.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1566324..1566389 +
Gchil4225.t1.exon2Gchil4225.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1566492..1566983 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1.intron1Gchil4225.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1566390..1566491 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4225.t1.stop1Gchil4225.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1566981..1566983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4225.t1 ID=Gchil4225.t1|Name=Gchil4225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=186bp
MMEMLQTFLFYWRRFKDLKKRQMVLQVVNLGMLLSAALIMYKTFMLISNS
ESPIVVVLSGSMEPGVHRGDLLLLTNYDKTDRLVSGDIVVYKLPERPVPI
VHRIIKIHETNDRSIDVLSKGDNNIPDDRDLYGPYRKWLTRPMIAGRAFA
FLPYAGMLTIIMNDYPQVKYVLLASLSLFALVGAD*
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spliced messenger RNA

>Gchil4225.t1 ID=Gchil4225.t1|Name=Gchil4225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004373_pilon:1566324..1566983+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAAATGCTGCAAACGTTTCTCTTTTACTGGCGGAGATTCAAAGA
TCTGAAGAAGCGGCAGATGGTGTTGCAAGTTGTCAACTTGGGAATGCTTC
TTTCTGCTGCCTTAATCATGTATAAGACTTTTATGCTCATATCTAACTCT
GAGAGCCCTATTGTTGTTGTCCTTAGCGGGAGCATGGAACCCGGTGTTCA
TCGAGGTGATCTATTACTTCTCACTAACTATGACAAAACTGATAGACTTG
TATCCGGTGATATCGTTGTGTACAAGCTACCTGAGAGACCCGTGCCAATC
GTGCATCGCATAATCAAGATTCACGAAACAAACGATCGGAGTATTGATGT
TCTGTCGAAGGGTGATAATAACATCCCCGATGACCGCGACCTTTACGGAC
CGTATCGCAAGTGGCTGACTCGCCCCATGATCGCGGGGCGGGCGTTCGCC
TTCTTGCCATACGCCGGTATGCTTACAATTATTATGAATGATTACCCACA
AGTCAAATATGTGTTGCTAGCCAGTCTCTCATTGTTTGCCTTGGTGGGCG
CTGATTAA
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protein sequence of Gchil4225.t1

>Gchil4225.t1 ID=Gchil4225.t1|Name=Gchil4225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=186bp
MMEMLQTFLFYWRRFKDLKKRQMVLQVVNLGMLLSAALIMYKTFMLISNS
ESPIVVVLSGSMEPGVHRGDLLLLTNYDKTDRLVSGDIVVYKLPERPVPI
VHRIIKIHETNDRSIDVLSKGDNNIPDDRDLYGPYRKWLTRPMIAGRAFA
FLPYAGMLTIIMNDYPQVKYVLLASLSLFALVGAD*
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mRNA from alignment at tig00004373_pilon:1566324..1566983+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4225.t1 ID=Gchil4225.t1|Name=Gchil4225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00004373_pilon:1566324..1566983+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGAAATGCTGCAAACGTTTCTCTTTTACTGGCGGAGATTCAAAGA
TCTGAAGAAGCGGCAGGTAAGCAATTGTTTTCCCACGCTTTGCTCGTTTC
TACTCTTGCTCACCTCTCGAAAAAGTATCTGACATCAACTCTATAAATTT
GGAGAATCTGTTCTGCAGATGGTGTTGCAAGTTGTCAACTTGGGAATGCT
TCTTTCTGCTGCCTTAATCATGTATAAGACTTTTATGCTCATATCTAACT
CTGAGAGCCCTATTGTTGTTGTCCTTAGCGGGAGCATGGAACCCGGTGTT
CATCGAGGTGATCTATTACTTCTCACTAACTATGACAAAACTGATAGACT
TGTATCCGGTGATATCGTTGTGTACAAGCTACCTGAGAGACCCGTGCCAA
TCGTGCATCGCATAATCAAGATTCACGAAACAAACGATCGGAGTATTGAT
GTTCTGTCGAAGGGTGATAATAACATCCCCGATGACCGCGACCTTTACGG
ACCGTATCGCAAGTGGCTGACTCGCCCCATGATCGCGGGGCGGGCGTTCG
CCTTCTTGCCATACGCCGGTATGCTTACAATTATTATGAATGATTACCCA
CAAGTCAAATATGTGTTGCTAGCCAGTCTCTCATTGTTTGCCTTGGTGGG
CGCTGATTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1566324..1566983+

>Gchil4225.t1 ID=Gchil4225.t1|Name=Gchil4225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00004373_pilon:1566324..1566983+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGAAATGCTGCAAACGTTTCTCTTTTACTGGCGGAGATTCAAAGA
TCTGAAGAAGCGGCAGATGGTGTTGCAAGTTGTCAACTTGGGAATGCTTC
TTTCTGCTGCCTTAATCATGTATAAGACTTTTATGCTCATATCTAACTCT
GAGAGCCCTATTGTTGTTGTCCTTAGCGGGAGCATGGAACCCGGTGTTCA
TCGAGGTGATCTATTACTTCTCACTAACTATGACAAAACTGATAGACTTG
TATCCGGTGATATCGTTGTGTACAAGCTACCTGAGAGACCCGTGCCAATC
GTGCATCGCATAATCAAGATTCACGAAACAAACGATCGGAGTATTGATGT
TCTGTCGAAGGGTGATAATAACATCCCCGATGACCGCGACCTTTACGGAC
CGTATCGCAAGTGGCTGACTCGCCCCATGATCGCGGGGCGGGCGTTCGCC
TTCTTGCCATACGCCGGTATGCTTACAATTATTATGAATGATTACCCACA
AGTCAAATATGTGTTGCTAGCCAGTCTCTCATTGTTTGCCTTGGTGGGCG
CTGATTAA
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