Gchil4165.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4165.t1
Unique Name	Gchil4165.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	788

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1178202..1180565 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo128286
PFAMs	DEAD,DUF4217,Helicase_C
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14806
Evalue	2.77e-124
EggNOG OGs	COG0513@1\|root,KOG0348@2759\|Eukaryota,3QCDI@4776\|Peronosporales
EC	3.6.4.13
Description	DUF4217
COG category	A
BRITE	ko00000,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4165	Gchil4165	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1178202..1180565 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4165.t1.stop1	Gchil4165.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1178202..1178204 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4165.t1.CDS1	Gchil4165.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1178202..1180565 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4165.t1.exon1	Gchil4165.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1178202..1180565 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4165.t1.start1	Gchil4165.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1180563..1180565 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4165.t1	Gchil4165.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1178202..1180565 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1178202..1180565-
coding sequence from alignment at tig00004373_pilon:1178202..1180565-

mRNA sequence

>Gchil4165.t1 ID=Gchil4165.t1|Name=Gchil4165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=788bp
MELNISVSESTRASRSFSIPKEKLKGSWKKRRRAEVQLKLKAGMRQANTK
KSSGFKPVASDEFVSGIEGGKTPECRADKPKGDIRASKRQRYSASLERLK
ALPNLVIEQGSAREIRENFKDEEAAIKRTNPQTNSAPPEMVDTTDAVQAT
FSVIGSLQRTGSKSEDLGKRELEMDDIEVDRGSGENEHFSSKTFEELGLY
RSICYHLTSRMSIKMPTKVQEKLLETMLNLKDGQLAIDILVRSATGSGKT
LAYLLPIAHYLLNRRRRIVREDGAMAIVVVPTRELANQVEVEASKLFRPW
HWIVTGSVVGGESKKREKARLRKGISLLVATPGRLLDHLRNTKSFTHDSC
EFLILDEADRLLDLGFEGEIKEVIERLDRKNEIDKIRSNILLSATLRKDV
ERLANFSMQDPVEVSVNIQSSGSRRQFAMPTQLKQHFCIVEQRHRLVTLA
CFLRLRALKHVNSVKEESEVPTCKVIVFFSTCDSVDFHYDLFKRLKLPQE
LDRKKETGPKESFVPLQIYHIHGNHSQKDRTESLRGFRQSSRAVLLCTDV
AARGLDLSGLSFAVQYDPPTGGQGEELEYLHRAGRTARIGAQGDALLFLL
PSERAYIGKLEGHGVSITEISSSAALAGMYPKFRVQSPHNITYAMRFVTS
VVQENLEKLVQENESMKQLALAGFQAYCRAYATHAREVRHFFHVRNLHLG
HVARSFTLSDKPAEFAELMKEVRNGKRRENGDMDQLDMGSNKGDIARAIA
SGERQPFNDQKTDLARRRREKGRGIEAMRELALEFAS*

spliced messenger RNA

>Gchil4165.t1 ID=Gchil4165.t1|Name=Gchil4165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2364bp|location=Sequence derived from alignment at tig00004373_pilon:1178202..1180565- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCAATATTTCCGTTTCTGAATCTACGAGAGCGTCTAGAAGCTT
TTCAATTCCAAAAGAGAAGTTGAAGGGCTCATGGAAGAAAAGGAGAAGAG
CGGAAGTTCAATTGAAATTGAAAGCTGGAATGAGGCAAGCCAATACGAAG
AAATCGAGCGGTTTCAAACCCGTGGCCTCTGATGAATTTGTGAGTGGAAT
CGAGGGTGGAAAGACACCTGAATGTCGTGCGGACAAACCGAAAGGTGATA
TTCGAGCTTCCAAACGGCAGAGATATAGCGCTTCTCTCGAGCGGCTTAAG
GCTCTACCTAACCTTGTTATTGAGCAAGGCAGTGCTAGAGAGATCCGAGA
AAACTTCAAAGACGAGGAAGCAGCAATAAAGCGAACGAATCCCCAAACAA
ACTCTGCTCCTCCAGAAATGGTTGACACTACAGACGCCGTACAAGCGACT
TTTTCTGTGATCGGTTCGCTACAGAGAACGGGAAGTAAGTCAGAGGACCT
CGGTAAGCGAGAACTCGAGATGGATGATATTGAAGTTGATCGAGGCAGCG
GAGAGAACGAGCATTTCTCTTCTAAAACGTTTGAAGAGTTAGGCTTGTAT
CGTTCCATATGTTATCATCTCACATCAAGAATGAGCATTAAAATGCCCAC
GAAAGTACAAGAAAAGCTGTTGGAAACCATGTTGAACCTCAAAGATGGGC
AACTGGCAATCGACATCCTTGTGCGAAGCGCGACGGGCTCAGGAAAGACA
CTTGCATACCTTTTACCAATCGCTCATTATCTCCTAAATAGAAGGCGGCG
GATAGTTCGAGAAGATGGGGCAATGGCTATTGTCGTTGTGCCAACGCGTG
AGCTTGCCAATCAAGTTGAAGTTGAGGCCAGCAAGTTGTTTCGCCCCTGG
CACTGGATAGTTACTGGGTCTGTTGTCGGAGGCGAAAGCAAGAAAAGAGA
GAAAGCCCGCCTTCGAAAAGGAATCAGTCTTCTAGTGGCAACACCTGGTC
GACTTCTTGACCATTTGAGAAACACGAAAAGTTTCACGCACGATTCATGT
GAATTTCTAATCCTGGACGAGGCAGATCGTTTGCTTGATCTAGGCTTTGA
AGGAGAGATTAAGGAGGTTATCGAGAGGCTCGATAGAAAGAATGAGATTG
ATAAGATCAGGTCAAATATTCTCCTCTCTGCGACGCTACGCAAAGATGTG
GAAAGACTTGCAAACTTTTCGATGCAGGATCCTGTTGAGGTGTCCGTCAA
CATACAATCAAGTGGTTCCAGACGTCAGTTTGCAATGCCAACCCAGCTCA
AGCAGCATTTCTGCATCGTCGAACAACGCCATCGCCTCGTCACTTTAGCA
TGTTTTTTGAGGCTCCGTGCTCTCAAACACGTTAATTCAGTCAAGGAGGA
GAGCGAAGTGCCAACGTGCAAAGTAATCGTTTTCTTCAGCACTTGCGACT
CTGTAGATTTTCATTATGATTTGTTCAAGAGACTGAAGCTTCCGCAAGAA
CTAGATAGAAAAAAGGAAACAGGGCCCAAGGAATCATTTGTACCCTTACA
AATCTATCACATTCACGGAAATCATTCACAAAAGGACAGGACGGAGTCGC
TTCGGGGCTTCAGACAAAGCAGCAGAGCAGTTCTGCTGTGCACTGATGTT
GCTGCAAGAGGGCTTGATTTGAGCGGCCTATCATTTGCTGTCCAGTACGA
TCCTCCGACCGGTGGACAAGGGGAGGAGCTGGAATATCTTCATCGTGCCG
GTCGAACTGCCCGAATTGGGGCACAAGGTGATGCATTGCTCTTTCTGCTA
CCTTCTGAGAGGGCATATATTGGTAAACTAGAAGGCCACGGTGTGTCAAT
AACCGAAATATCCAGCTCTGCTGCTCTCGCAGGCATGTACCCTAAATTTA
GAGTACAAAGTCCGCACAACATTACCTACGCAATGAGGTTTGTGACGTCA
GTAGTGCAAGAGAATCTCGAAAAGCTCGTTCAAGAAAACGAAAGTATGAA
GCAATTGGCCCTTGCAGGATTTCAGGCGTACTGCAGGGCCTATGCTACTC
ATGCTCGGGAGGTACGGCATTTCTTTCACGTTCGAAATCTACATCTTGGA
CATGTCGCCCGGTCTTTTACACTAAGCGACAAACCTGCAGAATTCGCTGA
ATTGATGAAAGAAGTCCGGAACGGGAAACGTCGAGAGAATGGCGATATGG
ATCAGTTGGACATGGGATCAAACAAGGGCGATATTGCCAGGGCTATAGCT
AGTGGCGAAAGGCAGCCTTTTAACGACCAGAAGACAGATCTTGCACGACG
ACGGAGAGAGAAGGGAAGGGGAATAGAAGCGATGAGAGAACTTGCATTGG
AGTTCGCTTCATAA

protein sequence of Gchil4165.t1

>Gchil4165.t1 ID=Gchil4165.t1|Name=Gchil4165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=788bp
MELNISVSESTRASRSFSIPKEKLKGSWKKRRRAEVQLKLKAGMRQANTK
KSSGFKPVASDEFVSGIEGGKTPECRADKPKGDIRASKRQRYSASLERLK
ALPNLVIEQGSAREIRENFKDEEAAIKRTNPQTNSAPPEMVDTTDAVQAT
FSVIGSLQRTGSKSEDLGKRELEMDDIEVDRGSGENEHFSSKTFEELGLY
RSICYHLTSRMSIKMPTKVQEKLLETMLNLKDGQLAIDILVRSATGSGKT
LAYLLPIAHYLLNRRRRIVREDGAMAIVVVPTRELANQVEVEASKLFRPW
HWIVTGSVVGGESKKREKARLRKGISLLVATPGRLLDHLRNTKSFTHDSC
EFLILDEADRLLDLGFEGEIKEVIERLDRKNEIDKIRSNILLSATLRKDV
ERLANFSMQDPVEVSVNIQSSGSRRQFAMPTQLKQHFCIVEQRHRLVTLA
CFLRLRALKHVNSVKEESEVPTCKVIVFFSTCDSVDFHYDLFKRLKLPQE
LDRKKETGPKESFVPLQIYHIHGNHSQKDRTESLRGFRQSSRAVLLCTDV
AARGLDLSGLSFAVQYDPPTGGQGEELEYLHRAGRTARIGAQGDALLFLL
PSERAYIGKLEGHGVSITEISSSAALAGMYPKFRVQSPHNITYAMRFVTS
VVQENLEKLVQENESMKQLALAGFQAYCRAYATHAREVRHFFHVRNLHLG
HVARSFTLSDKPAEFAELMKEVRNGKRRENGDMDQLDMGSNKGDIARAIA
SGERQPFNDQKTDLARRRREKGRGIEAMRELALEFAS*

mRNA from alignment at tig00004373_pilon:1178202..1180565-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4165.t1 ID=Gchil4165.t1|Name=Gchil4165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2364bp|location=Sequence derived from alignment at tig00004373_pilon:1178202..1180565- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCAATATTTCCGTTTCTGAATCTACGAGAGCGTCTAGAAGCTT
TTCAATTCCAAAAGAGAAGTTGAAGGGCTCATGGAAGAAAAGGAGAAGAG
CGGAAGTTCAATTGAAATTGAAAGCTGGAATGAGGCAAGCCAATACGAAG
AAATCGAGCGGTTTCAAACCCGTGGCCTCTGATGAATTTGTGAGTGGAAT
CGAGGGTGGAAAGACACCTGAATGTCGTGCGGACAAACCGAAAGGTGATA
TTCGAGCTTCCAAACGGCAGAGATATAGCGCTTCTCTCGAGCGGCTTAAG
GCTCTACCTAACCTTGTTATTGAGCAAGGCAGTGCTAGAGAGATCCGAGA
AAACTTCAAAGACGAGGAAGCAGCAATAAAGCGAACGAATCCCCAAACAA
ACTCTGCTCCTCCAGAAATGGTTGACACTACAGACGCCGTACAAGCGACT
TTTTCTGTGATCGGTTCGCTACAGAGAACGGGAAGTAAGTCAGAGGACCT
CGGTAAGCGAGAACTCGAGATGGATGATATTGAAGTTGATCGAGGCAGCG
GAGAGAACGAGCATTTCTCTTCTAAAACGTTTGAAGAGTTAGGCTTGTAT
CGTTCCATATGTTATCATCTCACATCAAGAATGAGCATTAAAATGCCCAC
GAAAGTACAAGAAAAGCTGTTGGAAACCATGTTGAACCTCAAAGATGGGC
AACTGGCAATCGACATCCTTGTGCGAAGCGCGACGGGCTCAGGAAAGACA
CTTGCATACCTTTTACCAATCGCTCATTATCTCCTAAATAGAAGGCGGCG
GATAGTTCGAGAAGATGGGGCAATGGCTATTGTCGTTGTGCCAACGCGTG
AGCTTGCCAATCAAGTTGAAGTTGAGGCCAGCAAGTTGTTTCGCCCCTGG
CACTGGATAGTTACTGGGTCTGTTGTCGGAGGCGAAAGCAAGAAAAGAGA
GAAAGCCCGCCTTCGAAAAGGAATCAGTCTTCTAGTGGCAACACCTGGTC
GACTTCTTGACCATTTGAGAAACACGAAAAGTTTCACGCACGATTCATGT
GAATTTCTAATCCTGGACGAGGCAGATCGTTTGCTTGATCTAGGCTTTGA
AGGAGAGATTAAGGAGGTTATCGAGAGGCTCGATAGAAAGAATGAGATTG
ATAAGATCAGGTCAAATATTCTCCTCTCTGCGACGCTACGCAAAGATGTG
GAAAGACTTGCAAACTTTTCGATGCAGGATCCTGTTGAGGTGTCCGTCAA
CATACAATCAAGTGGTTCCAGACGTCAGTTTGCAATGCCAACCCAGCTCA
AGCAGCATTTCTGCATCGTCGAACAACGCCATCGCCTCGTCACTTTAGCA
TGTTTTTTGAGGCTCCGTGCTCTCAAACACGTTAATTCAGTCAAGGAGGA
GAGCGAAGTGCCAACGTGCAAAGTAATCGTTTTCTTCAGCACTTGCGACT
CTGTAGATTTTCATTATGATTTGTTCAAGAGACTGAAGCTTCCGCAAGAA
CTAGATAGAAAAAAGGAAACAGGGCCCAAGGAATCATTTGTACCCTTACA
AATCTATCACATTCACGGAAATCATTCACAAAAGGACAGGACGGAGTCGC
TTCGGGGCTTCAGACAAAGCAGCAGAGCAGTTCTGCTGTGCACTGATGTT
GCTGCAAGAGGGCTTGATTTGAGCGGCCTATCATTTGCTGTCCAGTACGA
TCCTCCGACCGGTGGACAAGGGGAGGAGCTGGAATATCTTCATCGTGCCG
GTCGAACTGCCCGAATTGGGGCACAAGGTGATGCATTGCTCTTTCTGCTA
CCTTCTGAGAGGGCATATATTGGTAAACTAGAAGGCCACGGTGTGTCAAT
AACCGAAATATCCAGCTCTGCTGCTCTCGCAGGCATGTACCCTAAATTTA
GAGTACAAAGTCCGCACAACATTACCTACGCAATGAGGTTTGTGACGTCA
GTAGTGCAAGAGAATCTCGAAAAGCTCGTTCAAGAAAACGAAAGTATGAA
GCAATTGGCCCTTGCAGGATTTCAGGCGTACTGCAGGGCCTATGCTACTC
ATGCTCGGGAGGTACGGCATTTCTTTCACGTTCGAAATCTACATCTTGGA
CATGTCGCCCGGTCTTTTACACTAAGCGACAAACCTGCAGAATTCGCTGA
ATTGATGAAAGAAGTCCGGAACGGGAAACGTCGAGAGAATGGCGATATGG
ATCAGTTGGACATGGGATCAAACAAGGGCGATATTGCCAGGGCTATAGCT
AGTGGCGAAAGGCAGCCTTTTAACGACCAGAAGACAGATCTTGCACGACG
ACGGAGAGAGAAGGGAAGGGGAATAGAAGCGATGAGAGAACTTGCATTGG
AGTTCGCTTCATAA

Coding sequence (CDS) from alignment at tig00004373_pilon:1178202..1180565-

>Gchil4165.t1 ID=Gchil4165.t1|Name=Gchil4165.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2364bp|location=Sequence derived from alignment at tig00004373_pilon:1178202..1180565- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCAATATTTCCGTTTCTGAATCTACGAGAGCGTCTAGAAGCTT
TTCAATTCCAAAAGAGAAGTTGAAGGGCTCATGGAAGAAAAGGAGAAGAG
CGGAAGTTCAATTGAAATTGAAAGCTGGAATGAGGCAAGCCAATACGAAG
AAATCGAGCGGTTTCAAACCCGTGGCCTCTGATGAATTTGTGAGTGGAAT
CGAGGGTGGAAAGACACCTGAATGTCGTGCGGACAAACCGAAAGGTGATA
TTCGAGCTTCCAAACGGCAGAGATATAGCGCTTCTCTCGAGCGGCTTAAG
GCTCTACCTAACCTTGTTATTGAGCAAGGCAGTGCTAGAGAGATCCGAGA
AAACTTCAAAGACGAGGAAGCAGCAATAAAGCGAACGAATCCCCAAACAA
ACTCTGCTCCTCCAGAAATGGTTGACACTACAGACGCCGTACAAGCGACT
TTTTCTGTGATCGGTTCGCTACAGAGAACGGGAAGTAAGTCAGAGGACCT
CGGTAAGCGAGAACTCGAGATGGATGATATTGAAGTTGATCGAGGCAGCG
GAGAGAACGAGCATTTCTCTTCTAAAACGTTTGAAGAGTTAGGCTTGTAT
CGTTCCATATGTTATCATCTCACATCAAGAATGAGCATTAAAATGCCCAC
GAAAGTACAAGAAAAGCTGTTGGAAACCATGTTGAACCTCAAAGATGGGC
AACTGGCAATCGACATCCTTGTGCGAAGCGCGACGGGCTCAGGAAAGACA
CTTGCATACCTTTTACCAATCGCTCATTATCTCCTAAATAGAAGGCGGCG
GATAGTTCGAGAAGATGGGGCAATGGCTATTGTCGTTGTGCCAACGCGTG
AGCTTGCCAATCAAGTTGAAGTTGAGGCCAGCAAGTTGTTTCGCCCCTGG
CACTGGATAGTTACTGGGTCTGTTGTCGGAGGCGAAAGCAAGAAAAGAGA
GAAAGCCCGCCTTCGAAAAGGAATCAGTCTTCTAGTGGCAACACCTGGTC
GACTTCTTGACCATTTGAGAAACACGAAAAGTTTCACGCACGATTCATGT
GAATTTCTAATCCTGGACGAGGCAGATCGTTTGCTTGATCTAGGCTTTGA
AGGAGAGATTAAGGAGGTTATCGAGAGGCTCGATAGAAAGAATGAGATTG
ATAAGATCAGGTCAAATATTCTCCTCTCTGCGACGCTACGCAAAGATGTG
GAAAGACTTGCAAACTTTTCGATGCAGGATCCTGTTGAGGTGTCCGTCAA
CATACAATCAAGTGGTTCCAGACGTCAGTTTGCAATGCCAACCCAGCTCA
AGCAGCATTTCTGCATCGTCGAACAACGCCATCGCCTCGTCACTTTAGCA
TGTTTTTTGAGGCTCCGTGCTCTCAAACACGTTAATTCAGTCAAGGAGGA
GAGCGAAGTGCCAACGTGCAAAGTAATCGTTTTCTTCAGCACTTGCGACT
CTGTAGATTTTCATTATGATTTGTTCAAGAGACTGAAGCTTCCGCAAGAA
CTAGATAGAAAAAAGGAAACAGGGCCCAAGGAATCATTTGTACCCTTACA
AATCTATCACATTCACGGAAATCATTCACAAAAGGACAGGACGGAGTCGC
TTCGGGGCTTCAGACAAAGCAGCAGAGCAGTTCTGCTGTGCACTGATGTT
GCTGCAAGAGGGCTTGATTTGAGCGGCCTATCATTTGCTGTCCAGTACGA
TCCTCCGACCGGTGGACAAGGGGAGGAGCTGGAATATCTTCATCGTGCCG
GTCGAACTGCCCGAATTGGGGCACAAGGTGATGCATTGCTCTTTCTGCTA
CCTTCTGAGAGGGCATATATTGGTAAACTAGAAGGCCACGGTGTGTCAAT
AACCGAAATATCCAGCTCTGCTGCTCTCGCAGGCATGTACCCTAAATTTA
GAGTACAAAGTCCGCACAACATTACCTACGCAATGAGGTTTGTGACGTCA
GTAGTGCAAGAGAATCTCGAAAAGCTCGTTCAAGAAAACGAAAGTATGAA
GCAATTGGCCCTTGCAGGATTTCAGGCGTACTGCAGGGCCTATGCTACTC
ATGCTCGGGAGGTACGGCATTTCTTTCACGTTCGAAATCTACATCTTGGA
CATGTCGCCCGGTCTTTTACACTAAGCGACAAACCTGCAGAATTCGCTGA
ATTGATGAAAGAAGTCCGGAACGGGAAACGTCGAGAGAATGGCGATATGG
ATCAGTTGGACATGGGATCAAACAAGGGCGATATTGCCAGGGCTATAGCT
AGTGGCGAAAGGCAGCCTTTTAACGACCAGAAGACAGATCTTGCACGACG
ACGGAGAGAGAAGGGAAGGGGAATAGAAGCGATGAGAGAACTTGCATTGG
AGTTCGCTTCATAA