Gchil4082.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4082.t1
Unique NameGchil4082.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:564229..564905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4082Gchil4082Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 564229..564905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1Gchil4082.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 564229..564905 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1.stop1Gchil4082.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 564229..564231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1.CDS1Gchil4082.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 564229..564474 -
Gchil4082.t1.CDS2Gchil4082.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 564531..564905 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1.exon1Gchil4082.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 564229..564474 -
Gchil4082.t1.exon2Gchil4082.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 564531..564905 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1.intron1Gchil4082.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 564475..564530 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4082.t1.start1Gchil4082.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 564903..564905 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4082.t1 ID=Gchil4082.t1|Name=Gchil4082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=207bp
MARLCHDVRATVVTAALLAHTVRAAPTLFACSPSFVFVIVIVAVAPSPRR
PIVVVLMTISAVGRRALDYAAVRALLPHREPCVLLASVSRNRVAHSLVAR
TLQSAPDQYHLLEALAQAAAVLLRQMPLYRHRTLPAFAAARRVVWNTHHM
APLPARPLRLHVALRRARQHFGTVRVVAYASHLKVCHAELVFSFLRPCSL
ENTTAS*
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spliced messenger RNA

>Gchil4082.t1 ID=Gchil4082.t1|Name=Gchil4082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00004373_pilon:564229..564905- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTCTCTGTCATGACGTGCGTGCCACTGTTGTGACGGCCGCACT
GCTGGCGCATACAGTGCGCGCAGCGCCCACTTTGTTTGCTTGCAGTCCCT
CCTTCGTCTTCGTCATCGTCATCGTCGCCGTCGCCCCGTCGCCCCGCCGC
CCCATCGTCGTCGTGCTAATGACGATTTCGGCCGTGGGTCGACGCGCCCT
GGATTACGCTGCCGTGCGCGCGTTGCTGCCGCACCGCGAGCCGTGTGTGT
TGCTGGCCAGCGTGTCGCGCAACCGCGTCGCCCACTCCCTCGTCGCACGT
ACGCTACAGTCCGCCCCCGACCAATACCATCTGCTCGAGGCGCTTGCGCA
AGCCGCCGCAGTTCTCCTTCGACAGATGCCGCTGTACCGCCATCGCACAC
TGCCCGCCTTCGCCGCCGCGCGCCGCGTCGTGTGGAATACGCACCACATG
GCACCGTTGCCTGCGCGTCCGCTACGATTGCACGTTGCGTTGCGCAGAGC
GCGTCAACACTTTGGCACTGTGCGCGTCGTTGCGTACGCGAGTCACCTCA
AAGTGTGCCACGCAGAGCTTGTGTTTTCTTTTCTACGCCCGTGCTCTCTT
GAGAACACTACAGCTAGCTAG
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protein sequence of Gchil4082.t1

>Gchil4082.t1 ID=Gchil4082.t1|Name=Gchil4082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=207bp
MARLCHDVRATVVTAALLAHTVRAAPTLFACSPSFVFVIVIVAVAPSPRR
PIVVVLMTISAVGRRALDYAAVRALLPHREPCVLLASVSRNRVAHSLVAR
TLQSAPDQYHLLEALAQAAAVLLRQMPLYRHRTLPAFAAARRVVWNTHHM
APLPARPLRLHVALRRARQHFGTVRVVAYASHLKVCHAELVFSFLRPCSL
ENTTAS*
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mRNA from alignment at tig00004373_pilon:564229..564905-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4082.t1 ID=Gchil4082.t1|Name=Gchil4082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=677bp|location=Sequence derived from alignment at tig00004373_pilon:564229..564905- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGTCTCTGTCATGACGTGCGTGCCACTGTTGTGACGGCCGCACT
GCTGGCGCATACAGTGCGCGCAGCGCCCACTTTGTTTGCTTGCAGTCCCT
CCTTCGTCTTCGTCATCGTCATCGTCGCCGTCGCCCCGTCGCCCCGCCGC
CCCATCGTCGTCGTGCTAATGACGATTTCGGCCGTGGGTCGACGCGCCCT
GGATTACGCTGCCGTGCGCGCGTTGCTGCCGCACCGCGAGCCGTGTGTGT
TGCTGGCCAGCGTGTCGCGCAACCGCGTCGCCCACTCCCTCGTCGCACGT
ACGCTACAGTCCGCCCCCGACCAATACCATCTGCTCGAGGCGCTTGCGCA
AGCCGCCGCAGTTCTCCTTCGACAGGTAAGCTTTTTCTTTCATCGTCCCC
CCCCAACCCCCCCCCCTAACCACACCCGTAGATGCCGCTGTACCGCCATC
GCACACTGCCCGCCTTCGCCGCCGCGCGCCGCGTCGTGTGGAATACGCAC
CACATGGCACCGTTGCCTGCGCGTCCGCTACGATTGCACGTTGCGTTGCG
CAGAGCGCGTCAACACTTTGGCACTGTGCGCGTCGTTGCGTACGCGAGTC
ACCTCAAAGTGTGCCACGCAGAGCTTGTGTTTTCTTTTCTACGCCCGTGC
TCTCTTGAGAACACTACAGCTAGCTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:564229..564905-

>Gchil4082.t1 ID=Gchil4082.t1|Name=Gchil4082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00004373_pilon:564229..564905- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGTCTCTGTCATGACGTGCGTGCCACTGTTGTGACGGCCGCACT
GCTGGCGCATACAGTGCGCGCAGCGCCCACTTTGTTTGCTTGCAGTCCCT
CCTTCGTCTTCGTCATCGTCATCGTCGCCGTCGCCCCGTCGCCCCGCCGC
CCCATCGTCGTCGTGCTAATGACGATTTCGGCCGTGGGTCGACGCGCCCT
GGATTACGCTGCCGTGCGCGCGTTGCTGCCGCACCGCGAGCCGTGTGTGT
TGCTGGCCAGCGTGTCGCGCAACCGCGTCGCCCACTCCCTCGTCGCACGT
ACGCTACAGTCCGCCCCCGACCAATACCATCTGCTCGAGGCGCTTGCGCA
AGCCGCCGCAGTTCTCCTTCGACAGATGCCGCTGTACCGCCATCGCACAC
TGCCCGCCTTCGCCGCCGCGCGCCGCGTCGTGTGGAATACGCACCACATG
GCACCGTTGCCTGCGCGTCCGCTACGATTGCACGTTGCGTTGCGCAGAGC
GCGTCAACACTTTGGCACTGTGCGCGTCGTTGCGTACGCGAGTCACCTCA
AAGTGTGCCACGCAGAGCTTGTGTTTTCTTTTCTACGCCCGTGCTCTCTT
GAGAACACTACAGCTAGCTAG
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