Gchil4127.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4127.t1
Unique NameGchil4127.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length693
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:920406..922604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41926
PFAMsPeptidase_M3,Peptidase_M3_N
Max annot lvl2759|Eukaryota
Evalue3.47e-163
EggNOG OGsCOG1164@1|root,2S7HH@2759|Eukaryota
DescriptionPeptidase family M3
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4127Gchil4127Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 920406..922604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1Gchil4127.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 920406..922604 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1.stop1Gchil4127.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 920406..920408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1.CDS1Gchil4127.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 920406..921150 -
Gchil4127.t1.CDS2Gchil4127.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 921271..922604 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1.exon1Gchil4127.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 920406..921150 -
Gchil4127.t1.exon2Gchil4127.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 921271..922604 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1.intron1Gchil4127.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 921151..921270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4127.t1.start1Gchil4127.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 922602..922604 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4127.t1 ID=Gchil4127.t1|Name=Gchil4127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp
MLRTAITKRIRPAKVAMLLFTAPVTFHKARSSSATCPTVGSFCPTLRPSP
SAPISPLTSNLRMVSTTPAVEKAEAGSITGPSWELEYSATTDSQLTADID
EGERLIDVINALADKIKHLVPQAQNITAEQVAENDLIRSLTEMHRNYWNA
VVLLRNVYTYGSCASSVDGTDEDAKKLTGQVQVSFSLLKQAFEPAQLILD
LCPEHVFHTFLSADELAKDAEYILRHSRKMKDFRLSLSEENMVTTLGVTG
HSSWGNMYTDLSAVLSVEVNLPDGTKTMGVASAEAMRDSPDEQIRKASWE
GIRNAWLPHRETCAAALNAITGWRLDLYNKRGYESFLTSSLHSNHIQNAT
LDALFEALDGKTEVGRRAMKIQASALGKAALEPWDLFAPAPVKGDIGRVY
SFDEGIELIANAVGEVDKDAGSFVRMMRDKQWIEASRGDKKRPGAYCTGF
AKSRTPRVYLSDYNGRAQLLLTLAHELGHAFHSWQMRDLPRPQSSYPMNL
AETASIFFETVVGSKLLEQAESAEERFSILWGEAESAQAFLLNIPARYRF
EEELNKRRKNGKLSTKEIDEMMAAAWERYYGDALQSTDRVGVFSQSKLHF
YLTGISFYNWPYSFGYLFALGVYAEYENGNRDVFAKMYRDLLRDTGRMDA
EDVVERHLGGRIDDRRFWEKAIGVSEHKVDMLEKVAAEVAAV*
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spliced messenger RNA

>Gchil4127.t1 ID=Gchil4127.t1|Name=Gchil4127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at tig00004373_pilon:920406..922604- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGAACAGCCATAACGAAACGAATTCGGCCCGCGAAGGTCGCTAT
GCTTCTCTTCACTGCACCGGTCACCTTTCACAAGGCGCGATCTAGTTCTG
CCACCTGTCCAACTGTTGGCTCATTCTGCCCTACCCTACGTCCATCACCG
TCCGCGCCCATTTCGCCCTTGACCTCAAACCTCAGAATGGTATCCACCAC
CCCAGCTGTCGAAAAAGCAGAAGCAGGCTCGATCACGGGTCCGAGTTGGG
AGCTTGAGTATTCTGCCACGACCGACTCCCAACTCACCGCAGATATCGAT
GAGGGTGAACGCCTGATTGACGTCATTAATGCCTTGGCCGACAAGATCAA
ACATCTCGTCCCACAAGCTCAAAACATCACCGCGGAGCAAGTAGCCGAAA
ACGACCTCATTCGGTCTTTGACTGAAATGCATCGAAACTACTGGAATGCC
GTGGTCTTGTTGCGGAATGTGTACACATATGGAAGCTGTGCATCTTCTGT
AGACGGGACTGATGAAGACGCGAAGAAGCTCACCGGACAAGTGCAAGTAT
CGTTCTCTCTCTTAAAACAAGCATTTGAACCCGCACAACTCATTCTTGAC
CTGTGTCCTGAACACGTTTTTCATACGTTTCTGAGCGCAGACGAGCTTGC
TAAAGATGCAGAGTACATACTACGCCATTCACGCAAGATGAAAGACTTTC
GACTGTCTCTTTCTGAGGAAAATATGGTCACGACTTTGGGGGTAACCGGA
CACTCATCCTGGGGAAACATGTACACCGATCTGTCGGCCGTTCTTTCCGT
TGAGGTAAATCTCCCGGATGGAACAAAGACCATGGGTGTAGCAAGTGCTG
AAGCAATGCGAGACAGTCCGGATGAGCAGATACGAAAGGCTTCCTGGGAG
GGCATTCGCAATGCGTGGCTTCCCCACCGAGAAACATGTGCGGCCGCTCT
GAATGCAATAACAGGATGGCGATTGGATCTGTACAACAAACGCGGGTACG
AGTCGTTCTTGACGAGCTCATTGCATTCAAATCACATTCAAAACGCTACG
TTGGATGCGTTGTTTGAAGCGTTGGATGGAAAGACCGAAGTTGGGAGGCG
CGCGATGAAGATTCAGGCATCAGCTCTCGGAAAGGCGGCATTGGAACCCT
GGGATCTTTTCGCGCCGGCGCCTGTAAAGGGTGATATCGGTAGAGTGTAT
TCCTTTGATGAAGGAATTGAGCTGATTGCTAACGCAGTTGGAGAGGTAGA
CAAAGATGCTGGCTCTTTCGTACGAATGATGCGAGACAAGCAATGGATTG
AGGCATCTAGAGGGGACAAGAAGCGACCCGGAGCATATTGCACTGGCTTT
GCCAAGTCAAGAACACCTAGAGTGTATCTTAGCGACTACAATGGAAGAGC
ACAGCTTCTGTTGACGCTGGCCCACGAACTGGGTCATGCTTTTCATTCGT
GGCAAATGCGCGATCTACCTCGCCCACAATCATCGTATCCGATGAACCTG
GCAGAGACAGCCAGCATCTTCTTTGAAACAGTGGTGGGGAGCAAGCTTCT
GGAGCAGGCCGAAAGTGCCGAGGAGCGGTTCAGCATCCTGTGGGGAGAGG
CAGAAAGCGCGCAGGCGTTCCTGCTAAATATCCCGGCTCGCTACCGGTTC
GAAGAGGAGTTGAACAAAAGGCGAAAGAATGGGAAGCTATCAACAAAGGA
AATTGACGAGATGATGGCTGCGGCGTGGGAGCGATACTACGGCGATGCTC
TCCAATCGACAGATCGAGTTGGAGTTTTCAGCCAAAGTAAGTTACACTTT
TATCTGACGGGGATATCGTTCTATAACTGGCCCTATAGCTTCGGGTACCT
ATTTGCGCTTGGCGTTTATGCCGAATACGAAAACGGGAACCGCGATGTGT
TTGCGAAGATGTATCGTGATCTTCTGAGAGACACTGGGCGCATGGATGCC
GAAGACGTCGTGGAGAGGCATCTCGGAGGGCGAATCGACGACAGGAGGTT
TTGGGAAAAGGCGATTGGGGTGTCTGAACATAAAGTGGATATGTTGGAGA
AAGTGGCGGCTGAGGTAGCGGCCGTGTGA
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protein sequence of Gchil4127.t1

>Gchil4127.t1 ID=Gchil4127.t1|Name=Gchil4127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=693bp
MLRTAITKRIRPAKVAMLLFTAPVTFHKARSSSATCPTVGSFCPTLRPSP
SAPISPLTSNLRMVSTTPAVEKAEAGSITGPSWELEYSATTDSQLTADID
EGERLIDVINALADKIKHLVPQAQNITAEQVAENDLIRSLTEMHRNYWNA
VVLLRNVYTYGSCASSVDGTDEDAKKLTGQVQVSFSLLKQAFEPAQLILD
LCPEHVFHTFLSADELAKDAEYILRHSRKMKDFRLSLSEENMVTTLGVTG
HSSWGNMYTDLSAVLSVEVNLPDGTKTMGVASAEAMRDSPDEQIRKASWE
GIRNAWLPHRETCAAALNAITGWRLDLYNKRGYESFLTSSLHSNHIQNAT
LDALFEALDGKTEVGRRAMKIQASALGKAALEPWDLFAPAPVKGDIGRVY
SFDEGIELIANAVGEVDKDAGSFVRMMRDKQWIEASRGDKKRPGAYCTGF
AKSRTPRVYLSDYNGRAQLLLTLAHELGHAFHSWQMRDLPRPQSSYPMNL
AETASIFFETVVGSKLLEQAESAEERFSILWGEAESAQAFLLNIPARYRF
EEELNKRRKNGKLSTKEIDEMMAAAWERYYGDALQSTDRVGVFSQSKLHF
YLTGISFYNWPYSFGYLFALGVYAEYENGNRDVFAKMYRDLLRDTGRMDA
EDVVERHLGGRIDDRRFWEKAIGVSEHKVDMLEKVAAEVAAV*
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mRNA from alignment at tig00004373_pilon:920406..922604-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4127.t1 ID=Gchil4127.t1|Name=Gchil4127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at tig00004373_pilon:920406..922604- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACGAACAGCCATAACGAAACGAATTCGGCCCGCGAAGGTCGCTAT
GCTTCTCTTCACTGCACCGGTCACCTTTCACAAGGCGCGATCTAGTTCTG
CCACCTGTCCAACTGTTGGCTCATTCTGCCCTACCCTACGTCCATCACCG
TCCGCGCCCATTTCGCCCTTGACCTCAAACCTCAGAATGGTATCCACCAC
CCCAGCTGTCGAAAAAGCAGAAGCAGGCTCGATCACGGGTCCGAGTTGGG
AGCTTGAGTATTCTGCCACGACCGACTCCCAACTCACCGCAGATATCGAT
GAGGGTGAACGCCTGATTGACGTCATTAATGCCTTGGCCGACAAGATCAA
ACATCTCGTCCCACAAGCTCAAAACATCACCGCGGAGCAAGTAGCCGAAA
ACGACCTCATTCGGTCTTTGACTGAAATGCATCGAAACTACTGGAATGCC
GTGGTCTTGTTGCGGAATGTGTACACATATGGAAGCTGTGCATCTTCTGT
AGACGGGACTGATGAAGACGCGAAGAAGCTCACCGGACAAGTGCAAGTAT
CGTTCTCTCTCTTAAAACAAGCATTTGAACCCGCACAACTCATTCTTGAC
CTGTGTCCTGAACACGTTTTTCATACGTTTCTGAGCGCAGACGAGCTTGC
TAAAGATGCAGAGTACATACTACGCCATTCACGCAAGATGAAAGACTTTC
GACTGTCTCTTTCTGAGGAAAATATGGTCACGACTTTGGGGGTAACCGGA
CACTCATCCTGGGGAAACATGTACACCGATCTGTCGGCCGTTCTTTCCGT
TGAGGTAAATCTCCCGGATGGAACAAAGACCATGGGTGTAGCAAGTGCTG
AAGCAATGCGAGACAGTCCGGATGAGCAGATACGAAAGGCTTCCTGGGAG
GGCATTCGCAATGCGTGGCTTCCCCACCGAGAAACATGTGCGGCCGCTCT
GAATGCAATAACAGGATGGCGATTGGATCTGTACAACAAACGCGGGTACG
AGTCGTTCTTGACGAGCTCATTGCATTCAAATCACATTCAAAACGCTACG
TTGGATGCGTTGTTTGAAGCGTTGGATGGAAAGACCGAAGTTGGGAGGCG
CGCGATGAAGATTCAGGCATCAGCTCTCGGAAAGGCGGCATTGGAACCCT
GGGATCTTTTCGCGCCGGCGCCTGTAAAGGGTGATATCGGTAGAGTGTAT
TCCTTTGATGAAGGAATTGAGCTGATTGCTAACGCAGTTGGAGAGGTAGA
CAAAGATGCTGGCTCTTTCGTACGAATGATGCGAGACAAGCAATGGATTG
AGGCATCTAGAGGGGACAAGAAGCGACCCGGAGCGTAAGTATTGGACCAA
GACCCGAACTGATGCCGAACTCATTCTAGCGTGCGTAACTCGACATGTAT
GTCATGGACTGACGACATAGGTTTTTTGTTTTCCCGTTTGTGTTGTTGTG
ACAGATATTGCACTGGCTTTGCCAAGTCAAGAACACCTAGAGTGTATCTT
AGCGACTACAATGGAAGAGCACAGCTTCTGTTGACGCTGGCCCACGAACT
GGGTCATGCTTTTCATTCGTGGCAAATGCGCGATCTACCTCGCCCACAAT
CATCGTATCCGATGAACCTGGCAGAGACAGCCAGCATCTTCTTTGAAACA
GTGGTGGGGAGCAAGCTTCTGGAGCAGGCCGAAAGTGCCGAGGAGCGGTT
CAGCATCCTGTGGGGAGAGGCAGAAAGCGCGCAGGCGTTCCTGCTAAATA
TCCCGGCTCGCTACCGGTTCGAAGAGGAGTTGAACAAAAGGCGAAAGAAT
GGGAAGCTATCAACAAAGGAAATTGACGAGATGATGGCTGCGGCGTGGGA
GCGATACTACGGCGATGCTCTCCAATCGACAGATCGAGTTGGAGTTTTCA
GCCAAAGTAAGTTACACTTTTATCTGACGGGGATATCGTTCTATAACTGG
CCCTATAGCTTCGGGTACCTATTTGCGCTTGGCGTTTATGCCGAATACGA
AAACGGGAACCGCGATGTGTTTGCGAAGATGTATCGTGATCTTCTGAGAG
ACACTGGGCGCATGGATGCCGAAGACGTCGTGGAGAGGCATCTCGGAGGG
CGAATCGACGACAGGAGGTTTTGGGAAAAGGCGATTGGGGTGTCTGAACA
TAAAGTGGATATGTTGGAGAAAGTGGCGGCTGAGGTAGCGGCCGTGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:920406..922604-

>Gchil4127.t1 ID=Gchil4127.t1|Name=Gchil4127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2079bp|location=Sequence derived from alignment at tig00004373_pilon:920406..922604- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACGAACAGCCATAACGAAACGAATTCGGCCCGCGAAGGTCGCTAT
GCTTCTCTTCACTGCACCGGTCACCTTTCACAAGGCGCGATCTAGTTCTG
CCACCTGTCCAACTGTTGGCTCATTCTGCCCTACCCTACGTCCATCACCG
TCCGCGCCCATTTCGCCCTTGACCTCAAACCTCAGAATGGTATCCACCAC
CCCAGCTGTCGAAAAAGCAGAAGCAGGCTCGATCACGGGTCCGAGTTGGG
AGCTTGAGTATTCTGCCACGACCGACTCCCAACTCACCGCAGATATCGAT
GAGGGTGAACGCCTGATTGACGTCATTAATGCCTTGGCCGACAAGATCAA
ACATCTCGTCCCACAAGCTCAAAACATCACCGCGGAGCAAGTAGCCGAAA
ACGACCTCATTCGGTCTTTGACTGAAATGCATCGAAACTACTGGAATGCC
GTGGTCTTGTTGCGGAATGTGTACACATATGGAAGCTGTGCATCTTCTGT
AGACGGGACTGATGAAGACGCGAAGAAGCTCACCGGACAAGTGCAAGTAT
CGTTCTCTCTCTTAAAACAAGCATTTGAACCCGCACAACTCATTCTTGAC
CTGTGTCCTGAACACGTTTTTCATACGTTTCTGAGCGCAGACGAGCTTGC
TAAAGATGCAGAGTACATACTACGCCATTCACGCAAGATGAAAGACTTTC
GACTGTCTCTTTCTGAGGAAAATATGGTCACGACTTTGGGGGTAACCGGA
CACTCATCCTGGGGAAACATGTACACCGATCTGTCGGCCGTTCTTTCCGT
TGAGGTAAATCTCCCGGATGGAACAAAGACCATGGGTGTAGCAAGTGCTG
AAGCAATGCGAGACAGTCCGGATGAGCAGATACGAAAGGCTTCCTGGGAG
GGCATTCGCAATGCGTGGCTTCCCCACCGAGAAACATGTGCGGCCGCTCT
GAATGCAATAACAGGATGGCGATTGGATCTGTACAACAAACGCGGGTACG
AGTCGTTCTTGACGAGCTCATTGCATTCAAATCACATTCAAAACGCTACG
TTGGATGCGTTGTTTGAAGCGTTGGATGGAAAGACCGAAGTTGGGAGGCG
CGCGATGAAGATTCAGGCATCAGCTCTCGGAAAGGCGGCATTGGAACCCT
GGGATCTTTTCGCGCCGGCGCCTGTAAAGGGTGATATCGGTAGAGTGTAT
TCCTTTGATGAAGGAATTGAGCTGATTGCTAACGCAGTTGGAGAGGTAGA
CAAAGATGCTGGCTCTTTCGTACGAATGATGCGAGACAAGCAATGGATTG
AGGCATCTAGAGGGGACAAGAAGCGACCCGGAGCATATTGCACTGGCTTT
GCCAAGTCAAGAACACCTAGAGTGTATCTTAGCGACTACAATGGAAGAGC
ACAGCTTCTGTTGACGCTGGCCCACGAACTGGGTCATGCTTTTCATTCGT
GGCAAATGCGCGATCTACCTCGCCCACAATCATCGTATCCGATGAACCTG
GCAGAGACAGCCAGCATCTTCTTTGAAACAGTGGTGGGGAGCAAGCTTCT
GGAGCAGGCCGAAAGTGCCGAGGAGCGGTTCAGCATCCTGTGGGGAGAGG
CAGAAAGCGCGCAGGCGTTCCTGCTAAATATCCCGGCTCGCTACCGGTTC
GAAGAGGAGTTGAACAAAAGGCGAAAGAATGGGAAGCTATCAACAAAGGA
AATTGACGAGATGATGGCTGCGGCGTGGGAGCGATACTACGGCGATGCTC
TCCAATCGACAGATCGAGTTGGAGTTTTCAGCCAAAGTAAGTTACACTTT
TATCTGACGGGGATATCGTTCTATAACTGGCCCTATAGCTTCGGGTACCT
ATTTGCGCTTGGCGTTTATGCCGAATACGAAAACGGGAACCGCGATGTGT
TTGCGAAGATGTATCGTGATCTTCTGAGAGACACTGGGCGCATGGATGCC
GAAGACGTCGTGGAGAGGCATCTCGGAGGGCGAATCGACGACAGGAGGTT
TTGGGAAAAGGCGATTGGGGTGTCTGAACATAAAGTGGATATGTTGGAGA
AAGTGGCGGCTGAGGTAGCGGCCGTGTGA
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