Gchil4247.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4247.t1
Unique NameGchil4247.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1660021..1661496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7227.FBpp0071174
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K20675
KEGG Pathwayko04624,map04624
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008592,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016787,GO:0017171,GO:0019538,GO:0023051,GO:0023056,GO:0042742,GO:0043170,GO:0043207,GO:0044238,GO:0045087,GO:0045752,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0065007,GO:0070011,GO:0071704,GO:0098542,GO:0140096,GO:1901564
Evalue6.49e-17
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,38EF1@33154|Opisthokonta,3CNHR@33208|Metazoa,3E4NQ@33213|Bilateria,42AG3@6656|Arthropoda,3SZXH@50557|Insecta,45959@7147|Diptera,45XN7@7214|Drosophilidae
Descriptionserine-type endopeptidase activity. It is involved in the biological process described with
COG categoryO
BRITEko00000,ko00001,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4247Gchil4247Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1660021..1661496 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4247.t1.stop1Gchil4247.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1660021..1660023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4247.t1.CDS1Gchil4247.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1660021..1661496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4247.t1.exon1Gchil4247.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1660021..1661496 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4247.t1.start1Gchil4247.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1661494..1661496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4247.t1Gchil4247.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1660021..1661496 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4247.t1 ID=Gchil4247.t1|Name=Gchil4247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp
MGTARGLSKTLVLVSLIAIIASNGVAEASRFDSMFGNLKSKMDEMRDKMK
NVMEETRGRLSVLSKFFGEGKTRGDLTLPEIYNNVFSRSNSIYVANMSTE
IELPPGQGATTIIGVSNGGTMAVTNENGKVTVYNGQPAPSEPEHKENNDE
APGQGEAYPENKDTPAADGEGYPENNGSSDEDTAPQPSADENMDTAYVAL
LSDWDKFVTHEMWDVQETPAPTTEAAGDETSMETSSHMINGVYFGNHIPS
GAEFGVKFFYNDEENFYCSGSLIGYPYVLTAAHCGVVEGDQVRVGAQHLR
AGYKASAAEVIIHPDFDASSLVNDLAIVRLDGLESEKVLNENGVRAARVN
KNSSFPEQSFVGVVSGHGSVESDGQGVSNELRTTRHTIYKMNKCRDEITQ
GNLGKEDSYMCAGDGERSTTCVGDSGAGLWHYRVKTRKDGKVRKFYEIFG
VVSFGEVTDYALCPRGPPSVFQRTSANFHWIRAVVGKENLA*
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spliced messenger RNA

>Gchil4247.t1 ID=Gchil4247.t1|Name=Gchil4247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004373_pilon:1660021..1661496- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGACTGCCCGAGGTCTTTCGAAGACGCTCGTTCTCGTTTCGTTGAT
TGCCATCATAGCTAGCAATGGCGTTGCAGAGGCTTCACGATTCGATTCCA
TGTTCGGAAATCTCAAGAGTAAGATGGATGAAATGAGGGATAAGATGAAA
AATGTTATGGAAGAAACTAGAGGTAGACTTTCGGTGTTATCGAAGTTCTT
TGGAGAAGGGAAGACCAGAGGGGACCTGACTCTGCCTGAAATCTACAACA
ATGTGTTTTCTCGAAGCAACAGTATCTACGTTGCGAACATGAGCACAGAA
ATTGAATTGCCACCTGGTCAAGGTGCGACGACTATTATTGGAGTCTCAAA
TGGCGGCACTATGGCCGTAACGAACGAAAACGGAAAAGTGACGGTGTACA
ATGGTCAGCCTGCACCGTCCGAACCCGAGCATAAAGAAAACAATGATGAG
GCTCCAGGACAAGGAGAAGCTTATCCCGAAAACAAGGACACTCCCGCGGC
GGATGGAGAGGGCTATCCCGAGAACAATGGCTCTTCTGATGAAGATACAG
CTCCACAACCAAGCGCAGATGAAAACATGGATACCGCATACGTGGCGCTT
TTGTCGGATTGGGACAAATTTGTGACTCACGAGATGTGGGATGTACAAGA
GACACCCGCGCCTACCACTGAAGCAGCGGGCGACGAAACAAGCATGGAAA
CGTCGTCGCACATGATCAACGGGGTGTACTTTGGCAACCACATTCCGTCC
GGAGCGGAATTCGGCGTCAAGTTCTTCTACAACGATGAAGAAAACTTTTA
TTGCAGCGGAAGTTTAATTGGGTACCCTTACGTGTTGACGGCGGCGCATT
GCGGCGTAGTTGAGGGTGACCAAGTTCGAGTGGGTGCGCAGCACTTGCGC
GCCGGCTACAAGGCCAGTGCCGCAGAAGTGATAATCCATCCGGACTTTGA
CGCATCAAGTCTGGTAAATGATCTGGCCATCGTGCGTCTTGATGGCCTCG
AATCCGAAAAGGTACTGAACGAAAACGGAGTGCGAGCGGCGCGCGTGAAC
AAAAACTCGTCCTTCCCAGAACAAAGCTTTGTTGGCGTTGTCTCAGGTCA
CGGTTCCGTTGAAAGCGACGGGCAAGGCGTTTCCAACGAACTGCGCACTA
CTCGGCACACCATCTACAAAATGAACAAGTGTCGAGACGAAATCACGCAG
GGAAACCTCGGAAAGGAGGACAGCTACATGTGTGCTGGAGACGGAGAACG
ATCGACAACGTGTGTAGGGGATTCTGGCGCTGGGTTGTGGCACTATCGGG
TGAAGACTCGCAAAGACGGGAAAGTGAGGAAGTTTTACGAGATTTTCGGT
GTTGTGAGCTTTGGAGAGGTGACTGATTACGCGCTTTGCCCGAGAGGACC
TCCGTCAGTGTTTCAGAGGACTTCTGCCAACTTTCACTGGATCAGAGCTG
TTGTGGGGAAGGAGAACTTGGCTTAG
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protein sequence of Gchil4247.t1

>Gchil4247.t1 ID=Gchil4247.t1|Name=Gchil4247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MGTARGLSKTLVLVSLIAIIASNGVAEASRFDSMFGNLKSKMDEMRDKMK
NVMEETRGRLSVLSKFFGEGKTRGDLTLPEIYNNVFSRSNSIYVANMSTE
IELPPGQGATTIIGVSNGGTMAVTNENGKVTVYNGQPAPSEPEHKENNDE
APGQGEAYPENKDTPAADGEGYPENNGSSDEDTAPQPSADENMDTAYVAL
LSDWDKFVTHEMWDVQETPAPTTEAAGDETSMETSSHMINGVYFGNHIPS
GAEFGVKFFYNDEENFYCSGSLIGYPYVLTAAHCGVVEGDQVRVGAQHLR
AGYKASAAEVIIHPDFDASSLVNDLAIVRLDGLESEKVLNENGVRAARVN
KNSSFPEQSFVGVVSGHGSVESDGQGVSNELRTTRHTIYKMNKCRDEITQ
GNLGKEDSYMCAGDGERSTTCVGDSGAGLWHYRVKTRKDGKVRKFYEIFG
VVSFGEVTDYALCPRGPPSVFQRTSANFHWIRAVVGKENLA*
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mRNA from alignment at tig00004373_pilon:1660021..1661496-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4247.t1 ID=Gchil4247.t1|Name=Gchil4247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004373_pilon:1660021..1661496- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGACTGCCCGAGGTCTTTCGAAGACGCTCGTTCTCGTTTCGTTGAT
TGCCATCATAGCTAGCAATGGCGTTGCAGAGGCTTCACGATTCGATTCCA
TGTTCGGAAATCTCAAGAGTAAGATGGATGAAATGAGGGATAAGATGAAA
AATGTTATGGAAGAAACTAGAGGTAGACTTTCGGTGTTATCGAAGTTCTT
TGGAGAAGGGAAGACCAGAGGGGACCTGACTCTGCCTGAAATCTACAACA
ATGTGTTTTCTCGAAGCAACAGTATCTACGTTGCGAACATGAGCACAGAA
ATTGAATTGCCACCTGGTCAAGGTGCGACGACTATTATTGGAGTCTCAAA
TGGCGGCACTATGGCCGTAACGAACGAAAACGGAAAAGTGACGGTGTACA
ATGGTCAGCCTGCACCGTCCGAACCCGAGCATAAAGAAAACAATGATGAG
GCTCCAGGACAAGGAGAAGCTTATCCCGAAAACAAGGACACTCCCGCGGC
GGATGGAGAGGGCTATCCCGAGAACAATGGCTCTTCTGATGAAGATACAG
CTCCACAACCAAGCGCAGATGAAAACATGGATACCGCATACGTGGCGCTT
TTGTCGGATTGGGACAAATTTGTGACTCACGAGATGTGGGATGTACAAGA
GACACCCGCGCCTACCACTGAAGCAGCGGGCGACGAAACAAGCATGGAAA
CGTCGTCGCACATGATCAACGGGGTGTACTTTGGCAACCACATTCCGTCC
GGAGCGGAATTCGGCGTCAAGTTCTTCTACAACGATGAAGAAAACTTTTA
TTGCAGCGGAAGTTTAATTGGGTACCCTTACGTGTTGACGGCGGCGCATT
GCGGCGTAGTTGAGGGTGACCAAGTTCGAGTGGGTGCGCAGCACTTGCGC
GCCGGCTACAAGGCCAGTGCCGCAGAAGTGATAATCCATCCGGACTTTGA
CGCATCAAGTCTGGTAAATGATCTGGCCATCGTGCGTCTTGATGGCCTCG
AATCCGAAAAGGTACTGAACGAAAACGGAGTGCGAGCGGCGCGCGTGAAC
AAAAACTCGTCCTTCCCAGAACAAAGCTTTGTTGGCGTTGTCTCAGGTCA
CGGTTCCGTTGAAAGCGACGGGCAAGGCGTTTCCAACGAACTGCGCACTA
CTCGGCACACCATCTACAAAATGAACAAGTGTCGAGACGAAATCACGCAG
GGAAACCTCGGAAAGGAGGACAGCTACATGTGTGCTGGAGACGGAGAACG
ATCGACAACGTGTGTAGGGGATTCTGGCGCTGGGTTGTGGCACTATCGGG
TGAAGACTCGCAAAGACGGGAAAGTGAGGAAGTTTTACGAGATTTTCGGT
GTTGTGAGCTTTGGAGAGGTGACTGATTACGCGCTTTGCCCGAGAGGACC
TCCGTCAGTGTTTCAGAGGACTTCTGCCAACTTTCACTGGATCAGAGCTG
TTGTGGGGAAGGAGAACTTGGCTTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1660021..1661496-

>Gchil4247.t1 ID=Gchil4247.t1|Name=Gchil4247.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00004373_pilon:1660021..1661496- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGACTGCCCGAGGTCTTTCGAAGACGCTCGTTCTCGTTTCGTTGAT
TGCCATCATAGCTAGCAATGGCGTTGCAGAGGCTTCACGATTCGATTCCA
TGTTCGGAAATCTCAAGAGTAAGATGGATGAAATGAGGGATAAGATGAAA
AATGTTATGGAAGAAACTAGAGGTAGACTTTCGGTGTTATCGAAGTTCTT
TGGAGAAGGGAAGACCAGAGGGGACCTGACTCTGCCTGAAATCTACAACA
ATGTGTTTTCTCGAAGCAACAGTATCTACGTTGCGAACATGAGCACAGAA
ATTGAATTGCCACCTGGTCAAGGTGCGACGACTATTATTGGAGTCTCAAA
TGGCGGCACTATGGCCGTAACGAACGAAAACGGAAAAGTGACGGTGTACA
ATGGTCAGCCTGCACCGTCCGAACCCGAGCATAAAGAAAACAATGATGAG
GCTCCAGGACAAGGAGAAGCTTATCCCGAAAACAAGGACACTCCCGCGGC
GGATGGAGAGGGCTATCCCGAGAACAATGGCTCTTCTGATGAAGATACAG
CTCCACAACCAAGCGCAGATGAAAACATGGATACCGCATACGTGGCGCTT
TTGTCGGATTGGGACAAATTTGTGACTCACGAGATGTGGGATGTACAAGA
GACACCCGCGCCTACCACTGAAGCAGCGGGCGACGAAACAAGCATGGAAA
CGTCGTCGCACATGATCAACGGGGTGTACTTTGGCAACCACATTCCGTCC
GGAGCGGAATTCGGCGTCAAGTTCTTCTACAACGATGAAGAAAACTTTTA
TTGCAGCGGAAGTTTAATTGGGTACCCTTACGTGTTGACGGCGGCGCATT
GCGGCGTAGTTGAGGGTGACCAAGTTCGAGTGGGTGCGCAGCACTTGCGC
GCCGGCTACAAGGCCAGTGCCGCAGAAGTGATAATCCATCCGGACTTTGA
CGCATCAAGTCTGGTAAATGATCTGGCCATCGTGCGTCTTGATGGCCTCG
AATCCGAAAAGGTACTGAACGAAAACGGAGTGCGAGCGGCGCGCGTGAAC
AAAAACTCGTCCTTCCCAGAACAAAGCTTTGTTGGCGTTGTCTCAGGTCA
CGGTTCCGTTGAAAGCGACGGGCAAGGCGTTTCCAACGAACTGCGCACTA
CTCGGCACACCATCTACAAAATGAACAAGTGTCGAGACGAAATCACGCAG
GGAAACCTCGGAAAGGAGGACAGCTACATGTGTGCTGGAGACGGAGAACG
ATCGACAACGTGTGTAGGGGATTCTGGCGCTGGGTTGTGGCACTATCGGG
TGAAGACTCGCAAAGACGGGAAAGTGAGGAAGTTTTACGAGATTTTCGGT
GTTGTGAGCTTTGGAGAGGTGACTGATTACGCGCTTTGCCCGAGAGGACC
TCCGTCAGTGTTTCAGAGGACTTCTGCCAACTTTCACTGGATCAGAGCTG
TTGTGGGGAAGGAGAACTTGGCTTAG
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