Gchil4332.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4332.t1
Unique Name	Gchil4332.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2124989..2126437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5759.rna_EHI_054790-1
PFAMs	PolyA_pol,PolyA_pol_RNAbd
Max annot lvl	554915\|Amoebozoa
KEGG rclass	RC00078
KEGG ko	ko:K00974
KEGG Reaction	R09382,R09383,R09384,R09386
KEGG Pathway	ko03013,map03013
Evalue	1.74e-48
EggNOG OGs	COG0617@1\|root,KOG2159@2759\|Eukaryota,3X8G6@554915\|Amoebozoa
EC	2.7.7.72
Description	Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family
COG category	H
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4332	Gchil4332	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2124989..2126437 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4332.t1.start1	Gchil4332.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2124989..2124991 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4332.t1.CDS1	Gchil4332.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2124989..2126437 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4332.t1.exon1	Gchil4332.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2124989..2126437 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4332.t1.stop1	Gchil4332.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2126435..2126437 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4332.t1	Gchil4332.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2124989..2126437 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2124989..2126437+
coding sequence from alignment at tig00004373_pilon:2124989..2126437+

mRNA sequence

>Gchil4332.t1 ID=Gchil4332.t1|Name=Gchil4332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MRVITLSNWEKNVFDFLCAAADNLNKSRQGVELRVVGGWVRDKLLGRKTN
DIDAVVIRANASQFAYKLREYSKDLRDLFENGESSTPLISTIIPLASGNE
ASKQIETARVQIDGRVMDLVQLRTKGLVDSSDVEHVEEALSYDALKRDFT
INSLFYNVQTADIEDPTGQGLKDLSDKIIRTPIDAKLTMRDDPLRALRAV
RFSCELGFDICASMHLSLKDPDLQQKLGSEVSKERIGAEIIRCIKADPMK
AVQLIHMFGMNRALFGFEKHFEESMERVKNALFLALHSGTVEKFGPHDQI
VLVLACLLWNTNLVKSELHDGLRLSKKIQNDVEKIIRLGKQLGKIGCEWR
RARISNLTQDEDLWVKMARLVQNAGEPLWPSVSICASLQADDRTFLNELN
QCRISVNLCQIHPCLDGHILQNELSIQPGPTLGEALKDLMKLQLLAYRRN
GNVTSTDSEAESYLHILKSKFADQTLNSCRST*

spliced messenger RNA

>Gchil4332.t1 ID=Gchil4332.t1|Name=Gchil4332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004373_pilon:2124989..2126437+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTCATCACGCTTTCGAACTGGGAGAAGAATGTGTTTGACTTCCT
GTGCGCTGCGGCCGACAACTTAAACAAATCTCGTCAGGGGGTGGAGCTGC
GAGTCGTTGGCGGTTGGGTTCGTGACAAATTACTTGGGAGAAAAACAAAC
GACATAGATGCTGTAGTTATCCGCGCCAATGCATCCCAGTTTGCTTACAA
ACTTCGAGAATACTCAAAGGATTTGAGAGACCTATTTGAGAATGGAGAAT
CTTCCACTCCTCTTATTTCAACAATCATTCCACTGGCATCAGGAAACGAA
GCCTCGAAGCAAATAGAAACCGCAAGAGTTCAAATTGATGGCAGGGTGAT
GGACTTAGTCCAGTTGCGAACGAAAGGTCTTGTGGACTCAAGTGACGTAG
AACACGTAGAAGAAGCTTTATCCTACGACGCCTTAAAACGTGATTTCACA
ATCAACTCTTTGTTCTACAATGTTCAAACCGCAGACATCGAAGACCCGAC
CGGTCAAGGTCTCAAAGATTTGTCAGACAAAATCATTCGCACCCCAATAG
ATGCAAAGCTCACCATGAGAGACGATCCTCTTCGAGCTCTGCGAGCTGTG
AGATTCTCTTGCGAGTTGGGATTTGATATCTGCGCATCCATGCATCTCAG
TCTAAAAGATCCTGATCTTCAACAGAAGCTGGGCTCAGAGGTGAGCAAGG
AACGTATTGGTGCCGAAATTATTCGTTGTATTAAAGCAGATCCCATGAAA
GCTGTGCAACTGATACACATGTTTGGCATGAATAGGGCACTGTTTGGGTT
TGAAAAACACTTTGAAGAGAGCATGGAGCGTGTGAAAAATGCGCTGTTCC
TTGCTTTGCACAGTGGGACTGTAGAAAAATTTGGGCCTCATGATCAAATT
GTTTTAGTGCTCGCGTGTTTGCTCTGGAACACAAACTTAGTAAAGTCAGA
GCTCCATGACGGTCTAAGGCTGAGTAAAAAGATACAGAATGATGTTGAAA
AGATCATAAGACTAGGGAAACAACTCGGAAAAATTGGATGCGAATGGCGT
CGCGCCCGGATCTCAAATCTAACCCAAGACGAAGATCTGTGGGTGAAAAT
GGCCCGCTTAGTTCAAAACGCAGGAGAGCCTTTGTGGCCTTCTGTTTCAA
TTTGTGCCTCATTGCAAGCAGACGATAGAACTTTTCTTAACGAGCTGAAT
CAATGCCGCATTTCCGTCAACCTTTGTCAAATTCATCCGTGCTTGGATGG
TCATATTTTGCAGAATGAGCTTAGTATTCAACCAGGACCTACACTTGGAG
AGGCTTTGAAGGATTTGATGAAACTTCAACTCTTAGCTTATCGTCGAAAC
GGGAATGTGACCTCCACAGACAGCGAAGCCGAAAGTTACTTGCACATTTT
GAAGTCAAAGTTTGCCGACCAGACTCTCAATTCGTGTCGATCTACTTGA

protein sequence of Gchil4332.t1

>Gchil4332.t1 ID=Gchil4332.t1|Name=Gchil4332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MRVITLSNWEKNVFDFLCAAADNLNKSRQGVELRVVGGWVRDKLLGRKTN
DIDAVVIRANASQFAYKLREYSKDLRDLFENGESSTPLISTIIPLASGNE
ASKQIETARVQIDGRVMDLVQLRTKGLVDSSDVEHVEEALSYDALKRDFT
INSLFYNVQTADIEDPTGQGLKDLSDKIIRTPIDAKLTMRDDPLRALRAV
RFSCELGFDICASMHLSLKDPDLQQKLGSEVSKERIGAEIIRCIKADPMK
AVQLIHMFGMNRALFGFEKHFEESMERVKNALFLALHSGTVEKFGPHDQI
VLVLACLLWNTNLVKSELHDGLRLSKKIQNDVEKIIRLGKQLGKIGCEWR
RARISNLTQDEDLWVKMARLVQNAGEPLWPSVSICASLQADDRTFLNELN
QCRISVNLCQIHPCLDGHILQNELSIQPGPTLGEALKDLMKLQLLAYRRN
GNVTSTDSEAESYLHILKSKFADQTLNSCRST*

mRNA from alignment at tig00004373_pilon:2124989..2126437+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4332.t1 ID=Gchil4332.t1|Name=Gchil4332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004373_pilon:2124989..2126437+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGTCATCACGCTTTCGAACTGGGAGAAGAATGTGTTTGACTTCCT
GTGCGCTGCGGCCGACAACTTAAACAAATCTCGTCAGGGGGTGGAGCTGC
GAGTCGTTGGCGGTTGGGTTCGTGACAAATTACTTGGGAGAAAAACAAAC
GACATAGATGCTGTAGTTATCCGCGCCAATGCATCCCAGTTTGCTTACAA
ACTTCGAGAATACTCAAAGGATTTGAGAGACCTATTTGAGAATGGAGAAT
CTTCCACTCCTCTTATTTCAACAATCATTCCACTGGCATCAGGAAACGAA
GCCTCGAAGCAAATAGAAACCGCAAGAGTTCAAATTGATGGCAGGGTGAT
GGACTTAGTCCAGTTGCGAACGAAAGGTCTTGTGGACTCAAGTGACGTAG
AACACGTAGAAGAAGCTTTATCCTACGACGCCTTAAAACGTGATTTCACA
ATCAACTCTTTGTTCTACAATGTTCAAACCGCAGACATCGAAGACCCGAC
CGGTCAAGGTCTCAAAGATTTGTCAGACAAAATCATTCGCACCCCAATAG
ATGCAAAGCTCACCATGAGAGACGATCCTCTTCGAGCTCTGCGAGCTGTG
AGATTCTCTTGCGAGTTGGGATTTGATATCTGCGCATCCATGCATCTCAG
TCTAAAAGATCCTGATCTTCAACAGAAGCTGGGCTCAGAGGTGAGCAAGG
AACGTATTGGTGCCGAAATTATTCGTTGTATTAAAGCAGATCCCATGAAA
GCTGTGCAACTGATACACATGTTTGGCATGAATAGGGCACTGTTTGGGTT
TGAAAAACACTTTGAAGAGAGCATGGAGCGTGTGAAAAATGCGCTGTTCC
TTGCTTTGCACAGTGGGACTGTAGAAAAATTTGGGCCTCATGATCAAATT
GTTTTAGTGCTCGCGTGTTTGCTCTGGAACACAAACTTAGTAAAGTCAGA
GCTCCATGACGGTCTAAGGCTGAGTAAAAAGATACAGAATGATGTTGAAA
AGATCATAAGACTAGGGAAACAACTCGGAAAAATTGGATGCGAATGGCGT
CGCGCCCGGATCTCAAATCTAACCCAAGACGAAGATCTGTGGGTGAAAAT
GGCCCGCTTAGTTCAAAACGCAGGAGAGCCTTTGTGGCCTTCTGTTTCAA
TTTGTGCCTCATTGCAAGCAGACGATAGAACTTTTCTTAACGAGCTGAAT
CAATGCCGCATTTCCGTCAACCTTTGTCAAATTCATCCGTGCTTGGATGG
TCATATTTTGCAGAATGAGCTTAGTATTCAACCAGGACCTACACTTGGAG
AGGCTTTGAAGGATTTGATGAAACTTCAACTCTTAGCTTATCGTCGAAAC
GGGAATGTGACCTCCACAGACAGCGAAGCCGAAAGTTACTTGCACATTTT
GAAGTCAAAGTTTGCCGACCAGACTCTCAATTCGTGTCGATCTACTTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:2124989..2126437+

>Gchil4332.t1 ID=Gchil4332.t1|Name=Gchil4332.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004373_pilon:2124989..2126437+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGTCATCACGCTTTCGAACTGGGAGAAGAATGTGTTTGACTTCCT
GTGCGCTGCGGCCGACAACTTAAACAAATCTCGTCAGGGGGTGGAGCTGC
GAGTCGTTGGCGGTTGGGTTCGTGACAAATTACTTGGGAGAAAAACAAAC
GACATAGATGCTGTAGTTATCCGCGCCAATGCATCCCAGTTTGCTTACAA
ACTTCGAGAATACTCAAAGGATTTGAGAGACCTATTTGAGAATGGAGAAT
CTTCCACTCCTCTTATTTCAACAATCATTCCACTGGCATCAGGAAACGAA
GCCTCGAAGCAAATAGAAACCGCAAGAGTTCAAATTGATGGCAGGGTGAT
GGACTTAGTCCAGTTGCGAACGAAAGGTCTTGTGGACTCAAGTGACGTAG
AACACGTAGAAGAAGCTTTATCCTACGACGCCTTAAAACGTGATTTCACA
ATCAACTCTTTGTTCTACAATGTTCAAACCGCAGACATCGAAGACCCGAC
CGGTCAAGGTCTCAAAGATTTGTCAGACAAAATCATTCGCACCCCAATAG
ATGCAAAGCTCACCATGAGAGACGATCCTCTTCGAGCTCTGCGAGCTGTG
AGATTCTCTTGCGAGTTGGGATTTGATATCTGCGCATCCATGCATCTCAG
TCTAAAAGATCCTGATCTTCAACAGAAGCTGGGCTCAGAGGTGAGCAAGG
AACGTATTGGTGCCGAAATTATTCGTTGTATTAAAGCAGATCCCATGAAA
GCTGTGCAACTGATACACATGTTTGGCATGAATAGGGCACTGTTTGGGTT
TGAAAAACACTTTGAAGAGAGCATGGAGCGTGTGAAAAATGCGCTGTTCC
TTGCTTTGCACAGTGGGACTGTAGAAAAATTTGGGCCTCATGATCAAATT
GTTTTAGTGCTCGCGTGTTTGCTCTGGAACACAAACTTAGTAAAGTCAGA
GCTCCATGACGGTCTAAGGCTGAGTAAAAAGATACAGAATGATGTTGAAA
AGATCATAAGACTAGGGAAACAACTCGGAAAAATTGGATGCGAATGGCGT
CGCGCCCGGATCTCAAATCTAACCCAAGACGAAGATCTGTGGGTGAAAAT
GGCCCGCTTAGTTCAAAACGCAGGAGAGCCTTTGTGGCCTTCTGTTTCAA
TTTGTGCCTCATTGCAAGCAGACGATAGAACTTTTCTTAACGAGCTGAAT
CAATGCCGCATTTCCGTCAACCTTTGTCAAATTCATCCGTGCTTGGATGG
TCATATTTTGCAGAATGAGCTTAGTATTCAACCAGGACCTACACTTGGAG
AGGCTTTGAAGGATTTGATGAAACTTCAACTCTTAGCTTATCGTCGAAAC
GGGAATGTGACCTCCACAGACAGCGAAGCCGAAAGTTACTTGCACATTTT
GAAGTCAAAGTTTGCCGACCAGACTCTCAATTCGTGTCGATCTACTTGA