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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 5762.XP_002675411.1 |
| Preferred name | WDR1 |
| PFAMs | WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K17065 |
| KEGG Pathway | ko04139,ko04214,ko04217,ko04621,ko04668,map04139,map04214,map04217,map04621,map04668 |
| GOs | GO:0000003,GO:0000151,GO:0000278,GO:0000281,GO:0000902,GO:0000904,GO:0000910,GO:0001667,GO:0001736,GO:0001738,GO:0001891,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0002252,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002576,GO:0003006,GO:0003008,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005884,GO:0005886,GO:0005911,GO:0005937,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006907,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007015,GO:0007043,GO:0007049,GO:0007163,GO:0007164,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0008544,GO:0009605,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0010324,GO:0010564,GO:0010631,GO:0010638,GO:0010639,GO:0010927,GO:0010948,GO:0014013,GO:0014866,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016333,GO:0016334,GO:0016477,GO:0016528,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030010,GO:0030011,GO:0030016,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030042,GO:0030043,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030220,GO:0030239,GO:0030240,GO:0030427,GO:0030479,GO:0030707,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030855,GO:0030863,GO:0030864,GO:0030865,GO:0031032,GO:0031333,GO:0031461,GO:0032271,GO:0032272,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032991,GO:0033043,GO:0034315,GO:0034316,GO:0034329,GO:0034330,GO:0034622,GO:0034762,GO:0034765,GO:0035088,GO:0035090,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0036089,GO:0036344,GO:0040011,GO:0040012,GO:0042221,GO:0042247,GO:0042330,GO:0042391,GO:0042641,GO:0042643,GO:0042692,GO:0042995,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043269,GO:0043292,GO:0043297,GO:0043327,GO:0043332,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045197,GO:0045199,GO:0045214,GO:0045216,GO:0045595,GO:0045685,GO:0045786,GO:0046903,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048609,GO:0048646,GO:0048699,GO:0048707,GO:0048713,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050900,GO:0050954,GO:0051015,GO:0051016,GO:0051049,GO:0051125,GO:0051126,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051258,GO:0051261,GO:0051286,GO:0051301,GO:0051302,GO:0051493,GO:0051494,GO:0051495,GO:0051674,GO:0051693,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0055001,GO:0055002,GO:0060187,GO:0060284,GO:0060306,GO:0060307,GO:0060429,GO:0060562,GO:0061024,GO:0061061,GO:0061245,GO:0061640,GO:0061645,GO:0061836,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071689,GO:0071840,GO:0071944,GO:0080008,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097529,GO:0097530,GO:0098657,GO:0099024,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0099623,GO:0110053,GO:0120025,GO:0120036,GO:0120038,GO:1901879,GO:1901880,GO:1901881,GO:1902410,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1903047,GO:1903673,GO:1905861,GO:1990234,GO:1990266,GO:2000026 |
| Evalue | 1.47e-56 |
| EggNOG OGs | KOG0318@1|root,KOG0318@2759|Eukaryota |
| EC | 3.6.5.5 |
| Description | positive regulation of actin filament depolymerization |
| COG category | S |
| BRITE | ko00000,ko00001,ko01000,ko03029,ko04131,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil4354.t1 ID=Gchil4354.t1|Name=Gchil4354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=607bp MDHTLTLKHLYPGVPNTVRGEASHISADPTDNSSLIAYASGRVAVVRSVQ DPLHVRVFSMHSAPVTCACFSPDGKQIASSDEHGFVRIWNAETTVQKVEM HVYNGAVRDLAYSPDGKYLVLAGTSRGAFGKVVKVPSGGSAGVCSGHTKN GIACDVIKGYVVSGSEDMSVGLFKGPPLREIDTPAFFKHHTGFINAVRFS PSGKFLAIASSDRTCSVLDVASQQVICTIAEHAASVTGLVWFDDSNMMTS SNDKTNKFWSIPDGKCLRTIAYGNDVMDMQVGCAYSNKAGETISISLRPQ INVVAAGQDSVSKTFRGHCKQIIGLAAVGNSVYTADYSGILVAWEMDVGS ADINFNGKGPASSVCAISANENIVANVGLDGKVFITPRSTLKFAKPVVVK GGGVDITVPLGHTSAYSAIMVNETRLASINADATAVEAELKFSSGETGTA VAVNNDGLIAVGFETSGGAGELRFYTLNGSKFAEAGTHLKMPSAPNKVAF SPDGECVAVGEKSRRVKLYNATTRETVTGGGLVHTARVDAIAFSHDGSMV ASGGMDGSVAVWPVNSEDEPLKLKTAHRGGVTGIAFTSENCVVTSGGDSC VRTWNM* back to topspliced messenger RNA >Gchil4354.t1 ID=Gchil4354.t1|Name=Gchil4354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00004373_pilon:2227587..2229407- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATCACACGCTCACTCTCAAGCACCTATACCCCGGCGTCCCCAACAC CGTGCGCGGTGAGGCTTCTCACATCAGTGCTGACCCCACCGACAACTCCT CGCTCATTGCCTATGCTTCCGGACGAGTCGCGGTTGTGCGCAGCGTTCAG GATCCCCTTCATGTCCGTGTCTTTTCCATGCACTCTGCCCCGGTCACCTG CGCCTGTTTTTCCCCGGATGGCAAACAAATCGCTTCATCCGATGAACATG GCTTTGTGCGCATCTGGAACGCCGAAACTACCGTTCAGAAGGTGGAGATG CACGTGTACAACGGCGCTGTTCGTGATCTTGCATACTCCCCTGACGGCAA GTACCTCGTGCTAGCAGGAACGAGTCGCGGCGCTTTTGGAAAGGTCGTAA AAGTTCCCTCTGGAGGTTCGGCTGGTGTGTGCAGTGGACACACCAAAAAT GGTATCGCTTGCGATGTTATCAAGGGATATGTTGTAAGCGGTAGTGAAGA CATGTCGGTCGGTCTCTTCAAGGGTCCACCGCTGCGCGAAATTGACACCC CCGCATTTTTCAAACATCATACAGGTTTCATCAACGCTGTTCGCTTTTCG CCGAGTGGCAAGTTTTTGGCTATTGCTAGTTCTGACCGAACATGCAGTGT GTTGGATGTCGCTTCCCAACAAGTTATTTGCACTATTGCTGAACATGCTG CCAGTGTTACTGGCCTCGTATGGTTTGATGACTCCAACATGATGACTAGT TCTAACGACAAAACTAACAAGTTCTGGTCCATCCCGGACGGAAAATGCCT TCGCACCATTGCATATGGAAACGATGTCATGGACATGCAAGTTGGTTGTG CTTATTCGAACAAAGCAGGGGAGACTATTTCCATCAGCTTGAGACCACAA ATTAATGTTGTGGCGGCCGGTCAAGATTCAGTTTCCAAGACCTTCCGAGG ACATTGCAAACAAATCATCGGCCTGGCTGCCGTCGGAAACTCGGTGTACA CTGCAGACTATTCCGGTATCTTAGTGGCATGGGAAATGGACGTGGGAAGC GCCGACATAAACTTCAATGGGAAAGGACCTGCGTCATCCGTGTGTGCCAT TTCCGCCAACGAAAATATTGTCGCCAATGTAGGCTTGGATGGAAAGGTCT TCATCACACCTCGAAGCACTCTAAAATTCGCAAAGCCGGTCGTGGTGAAA GGTGGTGGCGTTGACATCACTGTACCTTTGGGTCACACCTCTGCCTACTC TGCGATTATGGTCAATGAGACGCGTTTGGCCTCCATCAACGCTGATGCCA CTGCGGTTGAAGCTGAGCTCAAGTTTAGTAGCGGAGAAACTGGTACGGCT GTCGCAGTCAACAACGATGGATTGATTGCTGTTGGTTTTGAAACATCCGG TGGCGCTGGTGAATTGAGATTCTACACATTGAATGGTTCTAAGTTCGCCG AAGCAGGAACCCACTTGAAGATGCCATCTGCGCCGAACAAAGTTGCCTTC TCTCCGGACGGAGAGTGCGTTGCTGTCGGTGAAAAATCGAGAAGAGTCAA ACTTTACAATGCCACAACCAGAGAGACTGTTACTGGTGGAGGTCTGGTTC ACACTGCTAGGGTAGATGCCATCGCATTCTCACATGATGGAAGTATGGTA GCGTCAGGAGGTATGGACGGCTCGGTTGCCGTGTGGCCTGTGAATTCAGA AGATGAGCCTCTTAAGTTGAAGACGGCCCATCGTGGCGGTGTGACTGGCA TCGCATTTACTTCAGAAAACTGTGTTGTCACTTCTGGAGGTGACTCTTGC GTTCGAACATGGAACATGTAG back to topprotein sequence of Gchil4354.t1 >Gchil4354.t1 ID=Gchil4354.t1|Name=Gchil4354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=607bp
MDHTLTLKHLYPGVPNTVRGEASHISADPTDNSSLIAYASGRVAVVRSVQ DPLHVRVFSMHSAPVTCACFSPDGKQIASSDEHGFVRIWNAETTVQKVEM HVYNGAVRDLAYSPDGKYLVLAGTSRGAFGKVVKVPSGGSAGVCSGHTKN GIACDVIKGYVVSGSEDMSVGLFKGPPLREIDTPAFFKHHTGFINAVRFS PSGKFLAIASSDRTCSVLDVASQQVICTIAEHAASVTGLVWFDDSNMMTS SNDKTNKFWSIPDGKCLRTIAYGNDVMDMQVGCAYSNKAGETISISLRPQ INVVAAGQDSVSKTFRGHCKQIIGLAAVGNSVYTADYSGILVAWEMDVGS ADINFNGKGPASSVCAISANENIVANVGLDGKVFITPRSTLKFAKPVVVK GGGVDITVPLGHTSAYSAIMVNETRLASINADATAVEAELKFSSGETGTA VAVNNDGLIAVGFETSGGAGELRFYTLNGSKFAEAGTHLKMPSAPNKVAF SPDGECVAVGEKSRRVKLYNATTRETVTGGGLVHTARVDAIAFSHDGSMV ASGGMDGSVAVWPVNSEDEPLKLKTAHRGGVTGIAFTSENCVVTSGGDSC VRTWNM* back to topmRNA from alignment at tig00004373_pilon:2227587..2229407- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil4354.t1 ID=Gchil4354.t1|Name=Gchil4354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00004373_pilon:2227587..2229407- (Gracilaria chilensis NLEC103_M9 male) ATGGATCACACGCTCACTCTCAAGCACCTATACCCCGGCGTCCCCAACAC
CGTGCGCGGTGAGGCTTCTCACATCAGTGCTGACCCCACCGACAACTCCT
CGCTCATTGCCTATGCTTCCGGACGAGTCGCGGTTGTGCGCAGCGTTCAG
GATCCCCTTCATGTCCGTGTCTTTTCCATGCACTCTGCCCCGGTCACCTG
CGCCTGTTTTTCCCCGGATGGCAAACAAATCGCTTCATCCGATGAACATG
GCTTTGTGCGCATCTGGAACGCCGAAACTACCGTTCAGAAGGTGGAGATG
CACGTGTACAACGGCGCTGTTCGTGATCTTGCATACTCCCCTGACGGCAA
GTACCTCGTGCTAGCAGGAACGAGTCGCGGCGCTTTTGGAAAGGTCGTAA
AAGTTCCCTCTGGAGGTTCGGCTGGTGTGTGCAGTGGACACACCAAAAAT
GGTATCGCTTGCGATGTTATCAAGGGATATGTTGTAAGCGGTAGTGAAGA
CATGTCGGTCGGTCTCTTCAAGGGTCCACCGCTGCGCGAAATTGACACCC
CCGCATTTTTCAAACATCATACAGGTTTCATCAACGCTGTTCGCTTTTCG
CCGAGTGGCAAGTTTTTGGCTATTGCTAGTTCTGACCGAACATGCAGTGT
GTTGGATGTCGCTTCCCAACAAGTTATTTGCACTATTGCTGAACATGCTG
CCAGTGTTACTGGCCTCGTATGGTTTGATGACTCCAACATGATGACTAGT
TCTAACGACAAAACTAACAAGTTCTGGTCCATCCCGGACGGAAAATGCCT
TCGCACCATTGCATATGGAAACGATGTCATGGACATGCAAGTTGGTTGTG
CTTATTCGAACAAAGCAGGGGAGACTATTTCCATCAGCTTGAGACCACAA
ATTAATGTTGTGGCGGCCGGTCAAGATTCAGTTTCCAAGACCTTCCGAGG
ACATTGCAAACAAATCATCGGCCTGGCTGCCGTCGGAAACTCGGTGTACA
CTGCAGACTATTCCGGTATCTTAGTGGCATGGGAAATGGACGTGGGAAGC
GCCGACATAAACTTCAATGGGAAAGGACCTGCGTCATCCGTGTGTGCCAT
TTCCGCCAACGAAAATATTGTCGCCAATGTAGGCTTGGATGGAAAGGTCT
TCATCACACCTCGAAGCACTCTAAAATTCGCAAAGCCGGTCGTGGTGAAA
GGTGGTGGCGTTGACATCACTGTACCTTTGGGTCACACCTCTGCCTACTC
TGCGATTATGGTCAATGAGACGCGTTTGGCCTCCATCAACGCTGATGCCA
CTGCGGTTGAAGCTGAGCTCAAGTTTAGTAGCGGAGAAACTGGTACGGCT
GTCGCAGTCAACAACGATGGATTGATTGCTGTTGGTTTTGAAACATCCGG
TGGCGCTGGTGAATTGAGATTCTACACATTGAATGGTTCTAAGTTCGCCG
AAGCAGGAACCCACTTGAAGATGCCATCTGCGCCGAACAAAGTTGCCTTC
TCTCCGGACGGAGAGTGCGTTGCTGTCGGTGAAAAATCGAGAAGAGTCAA
ACTTTACAATGCCACAACCAGAGAGACTGTTACTGGTGGAGGTCTGGTTC
ACACTGCTAGGGTAGATGCCATCGCATTCTCACATGATGGAAGTATGGTA
GCGTCAGGAGGTATGGACGGCTCGGTTGCCGTGTGGCCTGTGAATTCAGA
AGATGAGCCTCTTAAGTTGAAGACGGCCCATCGTGGCGGTGTGACTGGCA
TCGCATTTACTTCAGAAAACTGTGTTGTCACTTCTGGAGGTGACTCTTGC
GTTCGAACATGGAACATGTAG back to topCoding sequence (CDS) from alignment at tig00004373_pilon:2227587..2229407- >Gchil4354.t1 ID=Gchil4354.t1|Name=Gchil4354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1821bp|location=Sequence derived from alignment at tig00004373_pilon:2227587..2229407- (Gracilaria chilensis NLEC103_M9 male) ATGGATCACACGCTCACTCTCAAGCACCTATACCCCGGCGTCCCCAACAC CGTGCGCGGTGAGGCTTCTCACATCAGTGCTGACCCCACCGACAACTCCT CGCTCATTGCCTATGCTTCCGGACGAGTCGCGGTTGTGCGCAGCGTTCAG GATCCCCTTCATGTCCGTGTCTTTTCCATGCACTCTGCCCCGGTCACCTG CGCCTGTTTTTCCCCGGATGGCAAACAAATCGCTTCATCCGATGAACATG GCTTTGTGCGCATCTGGAACGCCGAAACTACCGTTCAGAAGGTGGAGATG CACGTGTACAACGGCGCTGTTCGTGATCTTGCATACTCCCCTGACGGCAA GTACCTCGTGCTAGCAGGAACGAGTCGCGGCGCTTTTGGAAAGGTCGTAA AAGTTCCCTCTGGAGGTTCGGCTGGTGTGTGCAGTGGACACACCAAAAAT GGTATCGCTTGCGATGTTATCAAGGGATATGTTGTAAGCGGTAGTGAAGA CATGTCGGTCGGTCTCTTCAAGGGTCCACCGCTGCGCGAAATTGACACCC CCGCATTTTTCAAACATCATACAGGTTTCATCAACGCTGTTCGCTTTTCG CCGAGTGGCAAGTTTTTGGCTATTGCTAGTTCTGACCGAACATGCAGTGT GTTGGATGTCGCTTCCCAACAAGTTATTTGCACTATTGCTGAACATGCTG CCAGTGTTACTGGCCTCGTATGGTTTGATGACTCCAACATGATGACTAGT TCTAACGACAAAACTAACAAGTTCTGGTCCATCCCGGACGGAAAATGCCT TCGCACCATTGCATATGGAAACGATGTCATGGACATGCAAGTTGGTTGTG CTTATTCGAACAAAGCAGGGGAGACTATTTCCATCAGCTTGAGACCACAA ATTAATGTTGTGGCGGCCGGTCAAGATTCAGTTTCCAAGACCTTCCGAGG ACATTGCAAACAAATCATCGGCCTGGCTGCCGTCGGAAACTCGGTGTACA CTGCAGACTATTCCGGTATCTTAGTGGCATGGGAAATGGACGTGGGAAGC GCCGACATAAACTTCAATGGGAAAGGACCTGCGTCATCCGTGTGTGCCAT TTCCGCCAACGAAAATATTGTCGCCAATGTAGGCTTGGATGGAAAGGTCT TCATCACACCTCGAAGCACTCTAAAATTCGCAAAGCCGGTCGTGGTGAAA GGTGGTGGCGTTGACATCACTGTACCTTTGGGTCACACCTCTGCCTACTC TGCGATTATGGTCAATGAGACGCGTTTGGCCTCCATCAACGCTGATGCCA CTGCGGTTGAAGCTGAGCTCAAGTTTAGTAGCGGAGAAACTGGTACGGCT GTCGCAGTCAACAACGATGGATTGATTGCTGTTGGTTTTGAAACATCCGG TGGCGCTGGTGAATTGAGATTCTACACATTGAATGGTTCTAAGTTCGCCG AAGCAGGAACCCACTTGAAGATGCCATCTGCGCCGAACAAAGTTGCCTTC TCTCCGGACGGAGAGTGCGTTGCTGTCGGTGAAAAATCGAGAAGAGTCAA ACTTTACAATGCCACAACCAGAGAGACTGTTACTGGTGGAGGTCTGGTTC ACACTGCTAGGGTAGATGCCATCGCATTCTCACATGATGGAAGTATGGTA GCGTCAGGAGGTATGGACGGCTCGGTTGCCGTGTGGCCTGTGAATTCAGA AGATGAGCCTCTTAAGTTGAAGACGGCCCATCGTGGCGGTGTGACTGGCA TCGCATTTACTTCAGAAAACTGTGTTGTCACTTCTGGAGGTGACTCTTGC GTTCGAACATGGAACATGTAG back to top
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