Gchil4048.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4048.t1
Unique NameGchil4048.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:230558..231052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S335_63V6.1
PFAMsSAP30_Sin3_bdg
Max annot lvl35493|Streptophyta
KEGG koko:K19202
Evalue5.87e-05
EggNOG OGs2CMXQ@1|root,2QSKD@2759|Eukaryota,37N6F@33090|Viridiplantae,3GB66@35493|Streptophyta
DescriptionSin3 binding region of histone deacetylase complex subunit SAP30
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4048Gchil4048Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 230558..231052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1Gchil4048.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 230558..231052 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1.stop1Gchil4048.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 230558..230560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1.CDS1Gchil4048.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 230558..230905 -
Gchil4048.t1.CDS2Gchil4048.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 230987..231052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1.exon1Gchil4048.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 230558..230905 -
Gchil4048.t1.exon2Gchil4048.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 230987..231052 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1.intron1Gchil4048.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 230906..230986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4048.t1.start1Gchil4048.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 231050..231052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=138bp
MTASKRTSKPVSKSEPTLSLHTYVDLSKLRKASLKRYKKHFKLDVKADSK
TELLEAVGRHFAQMPVREVDVARDFHTFWRLKAGRRVAAHASTLAAAAAV
VVHGPAAAASAAAATASAAAGSAAGAAGAATASASGR*
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spliced messenger RNA

>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004373_pilon:230558..231052- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCAAGCGTACCTCCAAGCCCGTGTCCAAGTCCGAGCCCAC
GCTCTCGCTGCACACCTACGTGGATCTCTCCAAGTTGCGCAAGGCCAGCC
TCAAGCGCTACAAGAAGCACTTCAAGCTGGACGTGAAGGCCGACTCCAAG
ACCGAGCTCCTTGAGGCGGTCGGCCGCCACTTTGCGCAGATGCCCGTCCG
TGAGGTGGACGTGGCGCGCGACTTTCACACCTTCTGGCGACTCAAGGCGG
GCCGTCGCGTCGCCGCTCACGCCTCCACGCTGGCCGCCGCGGCCGCCGTC
GTGGTGCACGGTCCCGCGGCGGCGGCGTCGGCGGCGGCGGCGACGGCGTC
GGCCGCCGCGGGCAGTGCCGCCGGCGCGGCCGGCGCTGCCACGGCGTCGG
CATCCGGCCGGTAG
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protein sequence of Gchil4048.t1

>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=138bp
MTASKRTSKPVSKSEPTLSLHTYVDLSKLRKASLKRYKKHFKLDVKADSK
TELLEAVGRHFAQMPVREVDVARDFHTFWRLKAGRRVAAHASTLAAAAAV
VVHGPAAAASAAAATASAAAGSAAGAAGAATASASGR*
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mRNA from alignment at tig00004373_pilon:230558..231052-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004373_pilon:230558..231052- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCTCCAAGCGTACCTCCAAGCCCGTGTCCAAGTCCGAGCCCAC
GCTCTCGCTGCACACCGTAAGTCAGCGCACCCGTCCGCCGCGCCCCTTCC
CGCGCGTGGTACACTACTAACCACCATGTCTCCTTGTCTCTCCCTAGTAC
GTGGATCTCTCCAAGTTGCGCAAGGCCAGCCTCAAGCGCTACAAGAAGCA
CTTCAAGCTGGACGTGAAGGCCGACTCCAAGACCGAGCTCCTTGAGGCGG
TCGGCCGCCACTTTGCGCAGATGCCCGTCCGTGAGGTGGACGTGGCGCGC
GACTTTCACACCTTCTGGCGACTCAAGGCGGGCCGTCGCGTCGCCGCTCA
CGCCTCCACGCTGGCCGCCGCGGCCGCCGTCGTGGTGCACGGTCCCGCGG
CGGCGGCGTCGGCGGCGGCGGCGACGGCGTCGGCCGCCGCGGGCAGTGCC
GCCGGCGCGGCCGGCGCTGCCACGGCGTCGGCATCCGGCCGGTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:230558..231052-

>Gchil4048.t1 ID=Gchil4048.t1|Name=Gchil4048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00004373_pilon:230558..231052- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCTCCAAGCGTACCTCCAAGCCCGTGTCCAAGTCCGAGCCCAC
GCTCTCGCTGCACACCTACGTGGATCTCTCCAAGTTGCGCAAGGCCAGCC
TCAAGCGCTACAAGAAGCACTTCAAGCTGGACGTGAAGGCCGACTCCAAG
ACCGAGCTCCTTGAGGCGGTCGGCCGCCACTTTGCGCAGATGCCCGTCCG
TGAGGTGGACGTGGCGCGCGACTTTCACACCTTCTGGCGACTCAAGGCGG
GCCGTCGCGTCGCCGCTCACGCCTCCACGCTGGCCGCCGCGGCCGCCGTC
GTGGTGCACGGTCCCGCGGCGGCGGCGTCGGCGGCGGCGGCGACGGCGTC
GGCCGCCGCGGGCAGTGCCGCCGGCGCGGCCGGCGCTGCCACGGCGTCGG
CATCCGGCCGGTAG
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