Gchil4258.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4258.t2
Unique NameGchil4258.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1679513..1679908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4258Gchil4258Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1679513..1681189 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t2.stop1Gchil4258.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1679513..1679515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t2.CDS1Gchil4258.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1679513..1679908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t2.exon1Gchil4258.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1679513..1679908 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t2.start1Gchil4258.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1679906..1679908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t2Gchil4258.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1679513..1679908 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4258.t2 ID=Gchil4258.t2|Name=Gchil4258.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=132bp
MFQVAVSAAMMDGEGKDANMDSVKDLYESFGKLMDEGSADSITSEVAVMR
IMYALQMLLQQEGSLKDVEGFGKMCEELGVDIDELISRAGVLEKTMGADA
TRFVDELREIVKAAGEEPKDGDLGQNAAVPQ*
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spliced messenger RNA

>Gchil4258.t2 ID=Gchil4258.t2|Name=Gchil4258.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1679908- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAAGTAGCCGTCAGTGCCGCCATGATGGATGGTGAGGGGAAAGA
TGCGAACATGGACTCCGTGAAAGATCTGTACGAATCGTTCGGAAAGCTTA
TGGACGAGGGATCTGCTGATTCTATAACATCAGAAGTTGCTGTGATGCGC
ATCATGTATGCATTACAAATGTTACTACAACAAGAAGGTTCTCTGAAAGA
TGTTGAGGGCTTTGGTAAGATGTGTGAAGAACTTGGTGTCGATATTGATG
AGCTCATAAGTCGAGCTGGCGTCTTGGAGAAGACAATGGGCGCAGATGCA
ACGCGATTCGTTGATGAACTTCGAGAAATTGTCAAGGCGGCTGGGGAAGA
ACCCAAAGACGGAGATTTGGGGCAAAATGCTGCAGTTCCTCAATGA
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protein sequence of Gchil4258.t2

>Gchil4258.t2 ID=Gchil4258.t2|Name=Gchil4258.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MFQVAVSAAMMDGEGKDANMDSVKDLYESFGKLMDEGSADSITSEVAVMR
IMYALQMLLQQEGSLKDVEGFGKMCEELGVDIDELISRAGVLEKTMGADA
TRFVDELREIVKAAGEEPKDGDLGQNAAVPQ*
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mRNA from alignment at tig00004373_pilon:1679513..1679908-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4258.t2 ID=Gchil4258.t2|Name=Gchil4258.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1679908- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCAAGTAGCCGTCAGTGCCGCCATGATGGATGGTGAGGGGAAAGA
TGCGAACATGGACTCCGTGAAAGATCTGTACGAATCGTTCGGAAAGCTTA
TGGACGAGGGATCTGCTGATTCTATAACATCAGAAGTTGCTGTGATGCGC
ATCATGTATGCATTACAAATGTTACTACAACAAGAAGGTTCTCTGAAAGA
TGTTGAGGGCTTTGGTAAGATGTGTGAAGAACTTGGTGTCGATATTGATG
AGCTCATAAGTCGAGCTGGCGTCTTGGAGAAGACAATGGGCGCAGATGCA
ACGCGATTCGTTGATGAACTTCGAGAAATTGTCAAGGCGGCTGGGGAAGA
ACCCAAAGACGGAGATTTGGGGCAAAATGCTGCAGTTCCTCAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1679513..1679908-

>Gchil4258.t2 ID=Gchil4258.t2|Name=Gchil4258.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1679908- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCAAGTAGCCGTCAGTGCCGCCATGATGGATGGTGAGGGGAAAGA
TGCGAACATGGACTCCGTGAAAGATCTGTACGAATCGTTCGGAAAGCTTA
TGGACGAGGGATCTGCTGATTCTATAACATCAGAAGTTGCTGTGATGCGC
ATCATGTATGCATTACAAATGTTACTACAACAAGAAGGTTCTCTGAAAGA
TGTTGAGGGCTTTGGTAAGATGTGTGAAGAACTTGGTGTCGATATTGATG
AGCTCATAAGTCGAGCTGGCGTCTTGGAGAAGACAATGGGCGCAGATGCA
ACGCGATTCGTTGATGAACTTCGAGAAATTGTCAAGGCGGCTGGGGAAGA
ACCCAAAGACGGAGATTTGGGGCAAAATGCTGCAGTTCCTCAATGA
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