Gchil4258.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4258.t1
Unique NameGchil4258.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1679513..1681189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4258Gchil4258Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1679513..1681189 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t1.stop1Gchil4258.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1679513..1679515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t1.CDS1Gchil4258.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1679513..1681189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t1.exon1Gchil4258.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1679513..1681189 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t1.start1Gchil4258.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1681187..1681189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4258.t1Gchil4258.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1679513..1681189 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4258.t1 ID=Gchil4258.t1|Name=Gchil4258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=559bp
MLSEARYSKRVRSSHVAFITPFVLTPSCRSLFHGQTPSVRLHSRLTPYVL
HRKIKRPLNLVCLAENTRFESNPHSPISHTSTIETVLKNVFIATTAGLTV
LMPRQAIAKQSVITITDQVPNFTLPSQEEALRRDPSHQSILVKSLKGAKK
VAPVVLVTVASVWALNAVYKRAQQQRLRDFQEQLRSSSYEAFGTDTLSQG
NSDSESARKSSSPPQKQNRFKFRKREGRVSEGHDMSSKVKLDIFQSKGAE
EAPKVVNQVYEGIQDAVPTSALERAIDIFITGDFSSDTNARKSALAKVLE
ARQASGLSEGAFRAVAEAYLSRTISAKLDRAVSSLSFDESESLGNLRTAV
KVIDDAEDIDKSLKLNYNGINRGNEAEKEDLYRRYAVHCFTDQEKLGVEI
ARLQKLQNLLKIDQRRSEALLADVSKVMFQVAVSAAMMDGEGKDANMDSV
KDLYESFGKLMDEGSADSITSEVAVMRIMYALQMLLQQEGSLKDVEGFGK
MCEELGVDIDELISRAGVLEKTMGADATRFVDELREIVKAAGEEPKDGDL
GQNAAVPQ*
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spliced messenger RNA

>Gchil4258.t1 ID=Gchil4258.t1|Name=Gchil4258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1681189- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCAGAAGCCAGGTATTCGAAGAGAGTTCGTTCATCTCACGTTGC
CTTCATCACGCCATTCGTGCTGACTCCATCATGTCGCTCATTGTTTCACG
GTCAAACACCCAGCGTTCGGCTCCATAGCCGCCTCACCCCGTACGTTCTC
CACCGCAAGATAAAGCGGCCCTTGAATCTTGTTTGTTTAGCTGAAAACAC
CAGATTTGAGTCCAACCCTCATTCTCCAATTTCACACACTTCCACAATAG
AAACCGTTCTCAAGAATGTTTTCATTGCTACCACCGCAGGATTGACTGTG
CTCATGCCTCGCCAAGCTATCGCTAAGCAGTCAGTGATCACGATAACAGA
TCAAGTACCTAACTTCACACTACCGTCTCAAGAAGAAGCCCTTCGAAGAG
ATCCTTCTCACCAAAGCATACTTGTGAAATCTTTGAAGGGCGCAAAGAAA
GTTGCTCCAGTCGTTTTGGTTACCGTTGCCTCAGTATGGGCTCTGAATGC
AGTGTACAAAAGGGCTCAGCAACAACGTCTGCGTGACTTTCAAGAACAGC
TTCGTTCTTCTTCGTACGAAGCCTTTGGCACTGACACTCTGTCACAGGGC
AACTCTGACAGCGAAAGTGCTAGGAAGTCGAGCTCGCCGCCTCAGAAACA
AAACCGCTTCAAATTCCGAAAGCGGGAAGGTCGCGTGAGCGAAGGTCATG
ATATGTCGTCAAAAGTGAAGCTTGATATATTCCAGTCGAAAGGTGCCGAA
GAAGCTCCAAAGGTTGTGAATCAAGTTTACGAAGGAATCCAGGACGCAGT
TCCTACGTCGGCACTAGAACGGGCGATTGATATTTTCATAACGGGCGACT
TTTCAAGTGACACAAACGCAAGAAAGTCTGCCCTGGCGAAGGTCTTGGAA
GCACGCCAGGCAAGCGGTCTGTCAGAGGGGGCGTTCAGAGCTGTTGCAGA
GGCGTATCTTTCCCGCACAATCTCAGCAAAACTAGATCGGGCAGTGTCGA
GCCTCAGCTTTGACGAATCAGAGAGTTTAGGCAATCTACGTACAGCAGTG
AAAGTCATAGACGATGCGGAAGATATTGATAAGTCTTTGAAGTTGAATTA
CAATGGCATTAATCGTGGAAATGAGGCCGAAAAGGAAGACTTGTACCGGC
GTTATGCCGTGCATTGCTTTACAGATCAAGAAAAACTGGGTGTAGAGATT
GCGAGGCTGCAGAAATTACAGAACCTACTGAAGATCGACCAGCGTCGAAG
TGAAGCATTGTTAGCTGATGTGTCAAAAGTCATGTTTCAAGTAGCCGTCA
GTGCCGCCATGATGGATGGTGAGGGGAAAGATGCGAACATGGACTCCGTG
AAAGATCTGTACGAATCGTTCGGAAAGCTTATGGACGAGGGATCTGCTGA
TTCTATAACATCAGAAGTTGCTGTGATGCGCATCATGTATGCATTACAAA
TGTTACTACAACAAGAAGGTTCTCTGAAAGATGTTGAGGGCTTTGGTAAG
ATGTGTGAAGAACTTGGTGTCGATATTGATGAGCTCATAAGTCGAGCTGG
CGTCTTGGAGAAGACAATGGGCGCAGATGCAACGCGATTCGTTGATGAAC
TTCGAGAAATTGTCAAGGCGGCTGGGGAAGAACCCAAAGACGGAGATTTG
GGGCAAAATGCTGCAGTTCCTCAATGA
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protein sequence of Gchil4258.t1

>Gchil4258.t1 ID=Gchil4258.t1|Name=Gchil4258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=559bp
MLSEARYSKRVRSSHVAFITPFVLTPSCRSLFHGQTPSVRLHSRLTPYVL
HRKIKRPLNLVCLAENTRFESNPHSPISHTSTIETVLKNVFIATTAGLTV
LMPRQAIAKQSVITITDQVPNFTLPSQEEALRRDPSHQSILVKSLKGAKK
VAPVVLVTVASVWALNAVYKRAQQQRLRDFQEQLRSSSYEAFGTDTLSQG
NSDSESARKSSSPPQKQNRFKFRKREGRVSEGHDMSSKVKLDIFQSKGAE
EAPKVVNQVYEGIQDAVPTSALERAIDIFITGDFSSDTNARKSALAKVLE
ARQASGLSEGAFRAVAEAYLSRTISAKLDRAVSSLSFDESESLGNLRTAV
KVIDDAEDIDKSLKLNYNGINRGNEAEKEDLYRRYAVHCFTDQEKLGVEI
ARLQKLQNLLKIDQRRSEALLADVSKVMFQVAVSAAMMDGEGKDANMDSV
KDLYESFGKLMDEGSADSITSEVAVMRIMYALQMLLQQEGSLKDVEGFGK
MCEELGVDIDELISRAGVLEKTMGADATRFVDELREIVKAAGEEPKDGDL
GQNAAVPQ*
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mRNA from alignment at tig00004373_pilon:1679513..1681189-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4258.t1 ID=Gchil4258.t1|Name=Gchil4258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1681189- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTCAGAAGCCAGGTATTCGAAGAGAGTTCGTTCATCTCACGTTGC
CTTCATCACGCCATTCGTGCTGACTCCATCATGTCGCTCATTGTTTCACG
GTCAAACACCCAGCGTTCGGCTCCATAGCCGCCTCACCCCGTACGTTCTC
CACCGCAAGATAAAGCGGCCCTTGAATCTTGTTTGTTTAGCTGAAAACAC
CAGATTTGAGTCCAACCCTCATTCTCCAATTTCACACACTTCCACAATAG
AAACCGTTCTCAAGAATGTTTTCATTGCTACCACCGCAGGATTGACTGTG
CTCATGCCTCGCCAAGCTATCGCTAAGCAGTCAGTGATCACGATAACAGA
TCAAGTACCTAACTTCACACTACCGTCTCAAGAAGAAGCCCTTCGAAGAG
ATCCTTCTCACCAAAGCATACTTGTGAAATCTTTGAAGGGCGCAAAGAAA
GTTGCTCCAGTCGTTTTGGTTACCGTTGCCTCAGTATGGGCTCTGAATGC
AGTGTACAAAAGGGCTCAGCAACAACGTCTGCGTGACTTTCAAGAACAGC
TTCGTTCTTCTTCGTACGAAGCCTTTGGCACTGACACTCTGTCACAGGGC
AACTCTGACAGCGAAAGTGCTAGGAAGTCGAGCTCGCCGCCTCAGAAACA
AAACCGCTTCAAATTCCGAAAGCGGGAAGGTCGCGTGAGCGAAGGTCATG
ATATGTCGTCAAAAGTGAAGCTTGATATATTCCAGTCGAAAGGTGCCGAA
GAAGCTCCAAAGGTTGTGAATCAAGTTTACGAAGGAATCCAGGACGCAGT
TCCTACGTCGGCACTAGAACGGGCGATTGATATTTTCATAACGGGCGACT
TTTCAAGTGACACAAACGCAAGAAAGTCTGCCCTGGCGAAGGTCTTGGAA
GCACGCCAGGCAAGCGGTCTGTCAGAGGGGGCGTTCAGAGCTGTTGCAGA
GGCGTATCTTTCCCGCACAATCTCAGCAAAACTAGATCGGGCAGTGTCGA
GCCTCAGCTTTGACGAATCAGAGAGTTTAGGCAATCTACGTACAGCAGTG
AAAGTCATAGACGATGCGGAAGATATTGATAAGTCTTTGAAGTTGAATTA
CAATGGCATTAATCGTGGAAATGAGGCCGAAAAGGAAGACTTGTACCGGC
GTTATGCCGTGCATTGCTTTACAGATCAAGAAAAACTGGGTGTAGAGATT
GCGAGGCTGCAGAAATTACAGAACCTACTGAAGATCGACCAGCGTCGAAG
TGAAGCATTGTTAGCTGATGTGTCAAAAGTCATGTTTCAAGTAGCCGTCA
GTGCCGCCATGATGGATGGTGAGGGGAAAGATGCGAACATGGACTCCGTG
AAAGATCTGTACGAATCGTTCGGAAAGCTTATGGACGAGGGATCTGCTGA
TTCTATAACATCAGAAGTTGCTGTGATGCGCATCATGTATGCATTACAAA
TGTTACTACAACAAGAAGGTTCTCTGAAAGATGTTGAGGGCTTTGGTAAG
ATGTGTGAAGAACTTGGTGTCGATATTGATGAGCTCATAAGTCGAGCTGG
CGTCTTGGAGAAGACAATGGGCGCAGATGCAACGCGATTCGTTGATGAAC
TTCGAGAAATTGTCAAGGCGGCTGGGGAAGAACCCAAAGACGGAGATTTG
GGGCAAAATGCTGCAGTTCCTCAATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1679513..1681189-

>Gchil4258.t1 ID=Gchil4258.t1|Name=Gchil4258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00004373_pilon:1679513..1681189- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTCAGAAGCCAGGTATTCGAAGAGAGTTCGTTCATCTCACGTTGC
CTTCATCACGCCATTCGTGCTGACTCCATCATGTCGCTCATTGTTTCACG
GTCAAACACCCAGCGTTCGGCTCCATAGCCGCCTCACCCCGTACGTTCTC
CACCGCAAGATAAAGCGGCCCTTGAATCTTGTTTGTTTAGCTGAAAACAC
CAGATTTGAGTCCAACCCTCATTCTCCAATTTCACACACTTCCACAATAG
AAACCGTTCTCAAGAATGTTTTCATTGCTACCACCGCAGGATTGACTGTG
CTCATGCCTCGCCAAGCTATCGCTAAGCAGTCAGTGATCACGATAACAGA
TCAAGTACCTAACTTCACACTACCGTCTCAAGAAGAAGCCCTTCGAAGAG
ATCCTTCTCACCAAAGCATACTTGTGAAATCTTTGAAGGGCGCAAAGAAA
GTTGCTCCAGTCGTTTTGGTTACCGTTGCCTCAGTATGGGCTCTGAATGC
AGTGTACAAAAGGGCTCAGCAACAACGTCTGCGTGACTTTCAAGAACAGC
TTCGTTCTTCTTCGTACGAAGCCTTTGGCACTGACACTCTGTCACAGGGC
AACTCTGACAGCGAAAGTGCTAGGAAGTCGAGCTCGCCGCCTCAGAAACA
AAACCGCTTCAAATTCCGAAAGCGGGAAGGTCGCGTGAGCGAAGGTCATG
ATATGTCGTCAAAAGTGAAGCTTGATATATTCCAGTCGAAAGGTGCCGAA
GAAGCTCCAAAGGTTGTGAATCAAGTTTACGAAGGAATCCAGGACGCAGT
TCCTACGTCGGCACTAGAACGGGCGATTGATATTTTCATAACGGGCGACT
TTTCAAGTGACACAAACGCAAGAAAGTCTGCCCTGGCGAAGGTCTTGGAA
GCACGCCAGGCAAGCGGTCTGTCAGAGGGGGCGTTCAGAGCTGTTGCAGA
GGCGTATCTTTCCCGCACAATCTCAGCAAAACTAGATCGGGCAGTGTCGA
GCCTCAGCTTTGACGAATCAGAGAGTTTAGGCAATCTACGTACAGCAGTG
AAAGTCATAGACGATGCGGAAGATATTGATAAGTCTTTGAAGTTGAATTA
CAATGGCATTAATCGTGGAAATGAGGCCGAAAAGGAAGACTTGTACCGGC
GTTATGCCGTGCATTGCTTTACAGATCAAGAAAAACTGGGTGTAGAGATT
GCGAGGCTGCAGAAATTACAGAACCTACTGAAGATCGACCAGCGTCGAAG
TGAAGCATTGTTAGCTGATGTGTCAAAAGTCATGTTTCAAGTAGCCGTCA
GTGCCGCCATGATGGATGGTGAGGGGAAAGATGCGAACATGGACTCCGTG
AAAGATCTGTACGAATCGTTCGGAAAGCTTATGGACGAGGGATCTGCTGA
TTCTATAACATCAGAAGTTGCTGTGATGCGCATCATGTATGCATTACAAA
TGTTACTACAACAAGAAGGTTCTCTGAAAGATGTTGAGGGCTTTGGTAAG
ATGTGTGAAGAACTTGGTGTCGATATTGATGAGCTCATAAGTCGAGCTGG
CGTCTTGGAGAAGACAATGGGCGCAGATGCAACGCGATTCGTTGATGAAC
TTCGAGAAATTGTCAAGGCGGCTGGGGAAGAACCCAAAGACGGAGATTTG
GGGCAAAATGCTGCAGTTCCTCAATGA
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