Gchil4312.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4312.t1
Unique NameGchil4312.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2077877..2079244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703994.1
PFAMsAMP_N,Peptidase_M24
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K18573
GOsGO:0003008,GO:0003014,GO:0003094,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0030145,GO:0031647,GO:0032501,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046983,GO:0050821,GO:0051604,GO:0065007,GO:0065008,GO:0070006,GO:0070011,GO:0071704,GO:0097205,GO:0140096,GO:1901564
Evalue9.13e-109
EggNOG OGsCOG0006@1|root,KOG2414@2759|Eukaryota
EC3.4.11.26,3.4.11.9
DescriptionAminopeptidase
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4312Gchil4312Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2077877..2079244 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4312.t1.stop1Gchil4312.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2077877..2077879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4312.t1.CDS1Gchil4312.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2077877..2079244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4312.t1.exon1Gchil4312.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2077877..2079244 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4312.t1.start1Gchil4312.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2079242..2079244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4312.t1Gchil4312.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2077877..2079244 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4312.t1 ID=Gchil4312.t1|Name=Gchil4312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MSSDEVTPGISRVEYMERRARIANDVPTNSITIFPSNPQMYMSEDVPYLY
HHNTDLMYLCGITEPGAFLVVERFDDQVRFILFVEPRDQSREVWEGPLCG
IGDEVRAYFGVDQVQMTKELSGYISQVLPRVESFHFEPSINPSITSALQK
LETEDKRALVSKWSQEESPKSFVNLQRVVKSEAELDLLRHAANTISSAMA
AAMAKTKVNGIEKSIEEKFIEATIEYNCKARGPYRMAFPSVVASGFNSTV
LHYMANNNIASSGDFVMVDAGCEVHGYCSDVSRSWPVSGSFSAPQRDLYE
LVLDVQKTCISLAKEGSTVEGNPVSLDGIHLHAVRRLTDGLMQLGFMKGH
TLESAVTTGEYSKYFPHAIGHYLGMDVHDTHHVPKSTPLKENMVITIEPG
LYCRADDISAPVQYRGIGMRIEDDVVVGSPMLCPEVLSKDVVKEVADVEA
LVGSG*
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spliced messenger RNA

>Gchil4312.t1 ID=Gchil4312.t1|Name=Gchil4312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004373_pilon:2077877..2079244- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCGATGAAGTTACGCCAGGAATATCTCGAGTGGAATACATGGA
ACGTCGAGCAAGAATAGCTAACGACGTACCAACCAATTCGATCACCATAT
TTCCATCCAATCCACAGATGTATATGTCAGAGGATGTACCATACTTGTAC
CATCATAACACGGATTTAATGTATTTGTGCGGAATCACAGAACCTGGCGC
GTTTTTGGTGGTTGAACGTTTTGATGACCAAGTGCGCTTCATTCTCTTCG
TTGAACCACGAGACCAATCTCGTGAAGTTTGGGAAGGACCTCTGTGTGGC
ATCGGTGATGAGGTTCGCGCGTATTTTGGTGTCGATCAAGTTCAGATGAC
CAAAGAGCTTTCCGGGTACATATCACAGGTTTTGCCAAGGGTAGAGTCTT
TTCACTTTGAACCTTCTATAAATCCATCGATAACATCTGCTCTGCAAAAA
CTAGAAACCGAAGATAAAAGAGCTCTCGTATCTAAATGGTCTCAAGAAGA
ATCTCCAAAATCGTTCGTCAACTTGCAGAGAGTGGTAAAATCTGAAGCTG
AGCTCGACCTCTTGCGACATGCAGCAAATACAATATCTTCAGCAATGGCA
GCTGCAATGGCTAAGACTAAAGTGAACGGGATCGAGAAATCAATTGAAGA
AAAGTTCATTGAAGCCACCATTGAGTATAACTGCAAGGCTCGCGGTCCGT
ATCGTATGGCATTTCCATCCGTTGTGGCCAGTGGTTTCAACAGCACTGTA
TTGCACTATATGGCTAATAACAATATAGCAAGTAGTGGAGATTTCGTCAT
GGTGGATGCTGGGTGCGAAGTGCACGGATATTGTTCGGACGTTTCTCGCT
CATGGCCTGTTTCTGGTTCGTTTTCTGCGCCTCAAAGAGATTTGTATGAG
CTAGTTTTGGACGTTCAAAAAACATGTATATCGCTTGCCAAAGAGGGAAG
CACAGTTGAAGGAAATCCCGTTTCACTGGACGGAATTCACCTTCATGCCG
TACGACGCTTAACAGATGGACTAATGCAGCTCGGGTTCATGAAAGGACAC
ACGCTGGAAAGTGCGGTTACGACCGGAGAGTACTCGAAGTACTTTCCGCA
CGCAATCGGGCACTATCTCGGCATGGATGTGCATGACACGCATCATGTAC
CAAAGTCAACACCTTTGAAAGAGAATATGGTCATAACCATTGAACCAGGA
TTATATTGTCGTGCAGATGACATATCCGCACCTGTGCAGTATAGAGGCAT
TGGAATGCGCATCGAAGACGACGTTGTCGTGGGAAGTCCCATGCTATGTC
CAGAAGTGCTTTCCAAAGATGTAGTGAAGGAAGTAGCAGATGTGGAAGCG
CTTGTAGGGTCCGGCTAG
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protein sequence of Gchil4312.t1

>Gchil4312.t1 ID=Gchil4312.t1|Name=Gchil4312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MSSDEVTPGISRVEYMERRARIANDVPTNSITIFPSNPQMYMSEDVPYLY
HHNTDLMYLCGITEPGAFLVVERFDDQVRFILFVEPRDQSREVWEGPLCG
IGDEVRAYFGVDQVQMTKELSGYISQVLPRVESFHFEPSINPSITSALQK
LETEDKRALVSKWSQEESPKSFVNLQRVVKSEAELDLLRHAANTISSAMA
AAMAKTKVNGIEKSIEEKFIEATIEYNCKARGPYRMAFPSVVASGFNSTV
LHYMANNNIASSGDFVMVDAGCEVHGYCSDVSRSWPVSGSFSAPQRDLYE
LVLDVQKTCISLAKEGSTVEGNPVSLDGIHLHAVRRLTDGLMQLGFMKGH
TLESAVTTGEYSKYFPHAIGHYLGMDVHDTHHVPKSTPLKENMVITIEPG
LYCRADDISAPVQYRGIGMRIEDDVVVGSPMLCPEVLSKDVVKEVADVEA
LVGSG*
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mRNA from alignment at tig00004373_pilon:2077877..2079244-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4312.t1 ID=Gchil4312.t1|Name=Gchil4312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004373_pilon:2077877..2079244- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCGATGAAGTTACGCCAGGAATATCTCGAGTGGAATACATGGA
ACGTCGAGCAAGAATAGCTAACGACGTACCAACCAATTCGATCACCATAT
TTCCATCCAATCCACAGATGTATATGTCAGAGGATGTACCATACTTGTAC
CATCATAACACGGATTTAATGTATTTGTGCGGAATCACAGAACCTGGCGC
GTTTTTGGTGGTTGAACGTTTTGATGACCAAGTGCGCTTCATTCTCTTCG
TTGAACCACGAGACCAATCTCGTGAAGTTTGGGAAGGACCTCTGTGTGGC
ATCGGTGATGAGGTTCGCGCGTATTTTGGTGTCGATCAAGTTCAGATGAC
CAAAGAGCTTTCCGGGTACATATCACAGGTTTTGCCAAGGGTAGAGTCTT
TTCACTTTGAACCTTCTATAAATCCATCGATAACATCTGCTCTGCAAAAA
CTAGAAACCGAAGATAAAAGAGCTCTCGTATCTAAATGGTCTCAAGAAGA
ATCTCCAAAATCGTTCGTCAACTTGCAGAGAGTGGTAAAATCTGAAGCTG
AGCTCGACCTCTTGCGACATGCAGCAAATACAATATCTTCAGCAATGGCA
GCTGCAATGGCTAAGACTAAAGTGAACGGGATCGAGAAATCAATTGAAGA
AAAGTTCATTGAAGCCACCATTGAGTATAACTGCAAGGCTCGCGGTCCGT
ATCGTATGGCATTTCCATCCGTTGTGGCCAGTGGTTTCAACAGCACTGTA
TTGCACTATATGGCTAATAACAATATAGCAAGTAGTGGAGATTTCGTCAT
GGTGGATGCTGGGTGCGAAGTGCACGGATATTGTTCGGACGTTTCTCGCT
CATGGCCTGTTTCTGGTTCGTTTTCTGCGCCTCAAAGAGATTTGTATGAG
CTAGTTTTGGACGTTCAAAAAACATGTATATCGCTTGCCAAAGAGGGAAG
CACAGTTGAAGGAAATCCCGTTTCACTGGACGGAATTCACCTTCATGCCG
TACGACGCTTAACAGATGGACTAATGCAGCTCGGGTTCATGAAAGGACAC
ACGCTGGAAAGTGCGGTTACGACCGGAGAGTACTCGAAGTACTTTCCGCA
CGCAATCGGGCACTATCTCGGCATGGATGTGCATGACACGCATCATGTAC
CAAAGTCAACACCTTTGAAAGAGAATATGGTCATAACCATTGAACCAGGA
TTATATTGTCGTGCAGATGACATATCCGCACCTGTGCAGTATAGAGGCAT
TGGAATGCGCATCGAAGACGACGTTGTCGTGGGAAGTCCCATGCTATGTC
CAGAAGTGCTTTCCAAAGATGTAGTGAAGGAAGTAGCAGATGTGGAAGCG
CTTGTAGGGTCCGGCTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:2077877..2079244-

>Gchil4312.t1 ID=Gchil4312.t1|Name=Gchil4312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004373_pilon:2077877..2079244- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCGATGAAGTTACGCCAGGAATATCTCGAGTGGAATACATGGA
ACGTCGAGCAAGAATAGCTAACGACGTACCAACCAATTCGATCACCATAT
TTCCATCCAATCCACAGATGTATATGTCAGAGGATGTACCATACTTGTAC
CATCATAACACGGATTTAATGTATTTGTGCGGAATCACAGAACCTGGCGC
GTTTTTGGTGGTTGAACGTTTTGATGACCAAGTGCGCTTCATTCTCTTCG
TTGAACCACGAGACCAATCTCGTGAAGTTTGGGAAGGACCTCTGTGTGGC
ATCGGTGATGAGGTTCGCGCGTATTTTGGTGTCGATCAAGTTCAGATGAC
CAAAGAGCTTTCCGGGTACATATCACAGGTTTTGCCAAGGGTAGAGTCTT
TTCACTTTGAACCTTCTATAAATCCATCGATAACATCTGCTCTGCAAAAA
CTAGAAACCGAAGATAAAAGAGCTCTCGTATCTAAATGGTCTCAAGAAGA
ATCTCCAAAATCGTTCGTCAACTTGCAGAGAGTGGTAAAATCTGAAGCTG
AGCTCGACCTCTTGCGACATGCAGCAAATACAATATCTTCAGCAATGGCA
GCTGCAATGGCTAAGACTAAAGTGAACGGGATCGAGAAATCAATTGAAGA
AAAGTTCATTGAAGCCACCATTGAGTATAACTGCAAGGCTCGCGGTCCGT
ATCGTATGGCATTTCCATCCGTTGTGGCCAGTGGTTTCAACAGCACTGTA
TTGCACTATATGGCTAATAACAATATAGCAAGTAGTGGAGATTTCGTCAT
GGTGGATGCTGGGTGCGAAGTGCACGGATATTGTTCGGACGTTTCTCGCT
CATGGCCTGTTTCTGGTTCGTTTTCTGCGCCTCAAAGAGATTTGTATGAG
CTAGTTTTGGACGTTCAAAAAACATGTATATCGCTTGCCAAAGAGGGAAG
CACAGTTGAAGGAAATCCCGTTTCACTGGACGGAATTCACCTTCATGCCG
TACGACGCTTAACAGATGGACTAATGCAGCTCGGGTTCATGAAAGGACAC
ACGCTGGAAAGTGCGGTTACGACCGGAGAGTACTCGAAGTACTTTCCGCA
CGCAATCGGGCACTATCTCGGCATGGATGTGCATGACACGCATCATGTAC
CAAAGTCAACACCTTTGAAAGAGAATATGGTCATAACCATTGAACCAGGA
TTATATTGTCGTGCAGATGACATATCCGCACCTGTGCAGTATAGAGGCAT
TGGAATGCGCATCGAAGACGACGTTGTCGTGGGAAGTCCCATGCTATGTC
CAGAAGTGCTTTCCAAAGATGTAGTGAAGGAAGTAGCAGATGTGGAAGCG
CTTGTAGGGTCCGGCTAG
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