Gchil4092.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4092.t1
Unique Name	Gchil4092.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:684620..686245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	1.28e-93
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4092	Gchil4092	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 684620..686245 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4092.t1.start1	Gchil4092.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 684620..684622 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4092.t1.CDS1	Gchil4092.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 684620..686245 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4092.t1.exon1	Gchil4092.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 684620..686245 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4092.t1.stop1	Gchil4092.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 686243..686245 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4092.t1	Gchil4092.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 684620..686245 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:684620..686245+
coding sequence from alignment at tig00004373_pilon:684620..686245+

mRNA sequence

>Gchil4092.t1 ID=Gchil4092.t1|Name=Gchil4092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=542bp
MALKGLLGARREHSPVAHDDAVFKWGNKRRQVFGARAANAHDASLLSSSS
ALSSDAPPLRYSNANLHVAGWLTKRGKRLGSRVDRFFELNGSVLSNARTE
HSVPTWTVNVRGSKVLAGPGREIIFKVDKSFTSFFAPTDELHDKWIKALQ
AVCAAVTDYYDFGKVIGRGAYSEVYLARDKQRNELCAIKVLERSNTEHAK
LIDRELEVLRLLNHQNIVQIYDIFDSARETFVVMEYLAGGELLEMITEND
HLSEKNSKQVIREVLQAVHYLHARGIVHRDVKPENILCVNRAWPLRVKIT
DFGLSKSVGGTDGETDRVMRSQCGTAYYLAPEIANSLPYGKPVDLWACGV
VLFVMLAGKFPFYGKSGDKFMRRLRAGVRFPKEEWSGISADAKALVRGLL
DPSPASRLTAAQALQHRWLVDEEDVTASSMPSKAIVDSQHRAQRRFNAAT
EPLSLQLGQFSVSNRRSMTRGGTELSVGEEAEVVRTDEQEEMEMEEEEEE
EEEVQQGRDYAFVDDVVEDNKSEVLFEQQVPSGAAGVGGDV*

spliced messenger RNA

>Gchil4092.t1 ID=Gchil4092.t1|Name=Gchil4092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00004373_pilon:684620..686245+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCAAAGGCCTGCTAGGTGCTCGCCGTGAGCACTCACCCGTCGC
GCACGATGACGCCGTCTTCAAGTGGGGAAACAAGCGCCGCCAGGTGTTTG
GAGCCCGAGCCGCCAATGCGCACGACGCCTCGTTGCTGTCGTCGTCTTCA
GCACTGTCCAGCGACGCCCCGCCGCTCAGATACTCCAACGCCAACCTGCA
CGTCGCAGGCTGGCTCACTAAACGTGGCAAAAGGCTAGGATCTCGCGTCG
ATCGATTCTTCGAGCTTAACGGAAGCGTGCTCAGTAACGCCCGTACCGAA
CATTCAGTGCCAACCTGGACTGTCAATGTTCGAGGTAGTAAGGTTTTAGC
AGGCCCTGGCAGAGAAATTATCTTTAAGGTTGACAAGTCTTTCACCAGCT
TTTTCGCCCCCACCGATGAGTTGCATGACAAGTGGATCAAGGCACTGCAG
GCCGTGTGTGCCGCTGTGACCGACTATTATGACTTTGGAAAAGTCATTGG
TCGAGGTGCTTACTCTGAAGTTTATCTGGCAAGGGATAAGCAACGAAATG
AACTGTGCGCTATCAAGGTGTTGGAACGTTCCAACACAGAACATGCCAAG
TTAATTGACCGTGAACTGGAGGTCCTGCGACTGCTGAATCACCAGAACAT
TGTACAAATCTACGACATTTTCGACTCGGCGCGTGAAACATTCGTGGTGA
TGGAATATTTAGCTGGCGGCGAACTGCTGGAAATGATCACTGAAAATGAT
CATTTGTCCGAGAAAAACTCCAAGCAAGTGATTCGCGAGGTGTTACAAGC
CGTGCACTATCTTCACGCCCGGGGTATTGTACATAGAGATGTGAAGCCTG
AAAACATCTTGTGCGTGAATCGTGCATGGCCGCTGCGTGTGAAAATTACC
GACTTTGGGCTGTCCAAGAGTGTTGGGGGGACGGATGGCGAGACGGACCG
CGTGATGCGCTCACAGTGCGGCACGGCGTATTATCTAGCGCCGGAGATAG
CAAACAGCCTTCCTTATGGAAAGCCAGTTGACCTTTGGGCATGTGGGGTG
GTGCTATTTGTGATGCTTGCTGGAAAGTTTCCGTTCTACGGCAAATCGGG
CGACAAGTTTATGAGACGGTTACGCGCAGGGGTGCGCTTCCCCAAGGAGG
AGTGGAGTGGGATTTCGGCTGATGCCAAGGCGTTGGTTCGCGGATTGCTG
GACCCGAGCCCTGCGTCGAGACTGACTGCGGCGCAGGCGCTTCAACACCG
GTGGTTGGTGGACGAGGAGGATGTTACAGCGTCTTCGATGCCTTCAAAAG
CGATTGTGGACTCGCAGCACAGGGCGCAACGTCGATTTAACGCGGCTACG
GAGCCGCTCTCTCTGCAGCTTGGACAGTTTTCGGTGTCTAATCGACGCTC
TATGACGAGGGGCGGGACGGAGCTGTCGGTGggagaggaggcggaggtgg
tacgaacggacgagcaggaggagatggagATggaggaggaggaggaggag
gaggaggaAGTGCAACAGGGGCGGGATTACGCGTTTGTAGACGATGTGGT
AGAGGACAACAAGAGCGAGGTGCTGTTTGAGCAACAAGTGCCGTCAGGAG
CGGCCGGGGTGGGGGGCGATGTATGA

protein sequence of Gchil4092.t1

>Gchil4092.t1 ID=Gchil4092.t1|Name=Gchil4092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=542bp
MALKGLLGARREHSPVAHDDAVFKWGNKRRQVFGARAANAHDASLLSSSS
ALSSDAPPLRYSNANLHVAGWLTKRGKRLGSRVDRFFELNGSVLSNARTE
HSVPTWTVNVRGSKVLAGPGREIIFKVDKSFTSFFAPTDELHDKWIKALQ
AVCAAVTDYYDFGKVIGRGAYSEVYLARDKQRNELCAIKVLERSNTEHAK
LIDRELEVLRLLNHQNIVQIYDIFDSARETFVVMEYLAGGELLEMITEND
HLSEKNSKQVIREVLQAVHYLHARGIVHRDVKPENILCVNRAWPLRVKIT
DFGLSKSVGGTDGETDRVMRSQCGTAYYLAPEIANSLPYGKPVDLWACGV
VLFVMLAGKFPFYGKSGDKFMRRLRAGVRFPKEEWSGISADAKALVRGLL
DPSPASRLTAAQALQHRWLVDEEDVTASSMPSKAIVDSQHRAQRRFNAAT
EPLSLQLGQFSVSNRRSMTRGGTELSVGEEAEVVRTDEQEEMEMEEEEEE
EEEVQQGRDYAFVDDVVEDNKSEVLFEQQVPSGAAGVGGDV*

mRNA from alignment at tig00004373_pilon:684620..686245+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4092.t1 ID=Gchil4092.t1|Name=Gchil4092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00004373_pilon:684620..686245+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCAAAGGCCTGCTAGGTGCTCGCCGTGAGCACTCACCCGTCGC
GCACGATGACGCCGTCTTCAAGTGGGGAAACAAGCGCCGCCAGGTGTTTG
GAGCCCGAGCCGCCAATGCGCACGACGCCTCGTTGCTGTCGTCGTCTTCA
GCACTGTCCAGCGACGCCCCGCCGCTCAGATACTCCAACGCCAACCTGCA
CGTCGCAGGCTGGCTCACTAAACGTGGCAAAAGGCTAGGATCTCGCGTCG
ATCGATTCTTCGAGCTTAACGGAAGCGTGCTCAGTAACGCCCGTACCGAA
CATTCAGTGCCAACCTGGACTGTCAATGTTCGAGGTAGTAAGGTTTTAGC
AGGCCCTGGCAGAGAAATTATCTTTAAGGTTGACAAGTCTTTCACCAGCT
TTTTCGCCCCCACCGATGAGTTGCATGACAAGTGGATCAAGGCACTGCAG
GCCGTGTGTGCCGCTGTGACCGACTATTATGACTTTGGAAAAGTCATTGG
TCGAGGTGCTTACTCTGAAGTTTATCTGGCAAGGGATAAGCAACGAAATG
AACTGTGCGCTATCAAGGTGTTGGAACGTTCCAACACAGAACATGCCAAG
TTAATTGACCGTGAACTGGAGGTCCTGCGACTGCTGAATCACCAGAACAT
TGTACAAATCTACGACATTTTCGACTCGGCGCGTGAAACATTCGTGGTGA
TGGAATATTTAGCTGGCGGCGAACTGCTGGAAATGATCACTGAAAATGAT
CATTTGTCCGAGAAAAACTCCAAGCAAGTGATTCGCGAGGTGTTACAAGC
CGTGCACTATCTTCACGCCCGGGGTATTGTACATAGAGATGTGAAGCCTG
AAAACATCTTGTGCGTGAATCGTGCATGGCCGCTGCGTGTGAAAATTACC
GACTTTGGGCTGTCCAAGAGTGTTGGGGGGACGGATGGCGAGACGGACCG
CGTGATGCGCTCACAGTGCGGCACGGCGTATTATCTAGCGCCGGAGATAG
CAAACAGCCTTCCTTATGGAAAGCCAGTTGACCTTTGGGCATGTGGGGTG
GTGCTATTTGTGATGCTTGCTGGAAAGTTTCCGTTCTACGGCAAATCGGG
CGACAAGTTTATGAGACGGTTACGCGCAGGGGTGCGCTTCCCCAAGGAGG
AGTGGAGTGGGATTTCGGCTGATGCCAAGGCGTTGGTTCGCGGATTGCTG
GACCCGAGCCCTGCGTCGAGACTGACTGCGGCGCAGGCGCTTCAACACCG
GTGGTTGGTGGACGAGGAGGATGTTACAGCGTCTTCGATGCCTTCAAAAG
CGATTGTGGACTCGCAGCACAGGGCGCAACGTCGATTTAACGCGGCTACG
GAGCCGCTCTCTCTGCAGCTTGGACAGTTTTCGGTGTCTAATCGACGCTC
TATGACGAGGGGCGGGACGGAGCTGTCGGTGggagaggaggcggaggtgg
tacgaacggacgagcaggaggagatggagATggaggaggaggaggaggag
gaggaggaAGTGCAACAGGGGCGGGATTACGCGTTTGTAGACGATGTGGT
AGAGGACAACAAGAGCGAGGTGCTGTTTGAGCAACAAGTGCCGTCAGGAG
CGGCCGGGGTGGGGGGCGATGTATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:684620..686245+

>Gchil4092.t1 ID=Gchil4092.t1|Name=Gchil4092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00004373_pilon:684620..686245+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCAAAGGCCTGCTAGGTGCTCGCCGTGAGCACTCACCCGTCGC
GCACGATGACGCCGTCTTCAAGTGGGGAAACAAGCGCCGCCAGGTGTTTG
GAGCCCGAGCCGCCAATGCGCACGACGCCTCGTTGCTGTCGTCGTCTTCA
GCACTGTCCAGCGACGCCCCGCCGCTCAGATACTCCAACGCCAACCTGCA
CGTCGCAGGCTGGCTCACTAAACGTGGCAAAAGGCTAGGATCTCGCGTCG
ATCGATTCTTCGAGCTTAACGGAAGCGTGCTCAGTAACGCCCGTACCGAA
CATTCAGTGCCAACCTGGACTGTCAATGTTCGAGGTAGTAAGGTTTTAGC
AGGCCCTGGCAGAGAAATTATCTTTAAGGTTGACAAGTCTTTCACCAGCT
TTTTCGCCCCCACCGATGAGTTGCATGACAAGTGGATCAAGGCACTGCAG
GCCGTGTGTGCCGCTGTGACCGACTATTATGACTTTGGAAAAGTCATTGG
TCGAGGTGCTTACTCTGAAGTTTATCTGGCAAGGGATAAGCAACGAAATG
AACTGTGCGCTATCAAGGTGTTGGAACGTTCCAACACAGAACATGCCAAG
TTAATTGACCGTGAACTGGAGGTCCTGCGACTGCTGAATCACCAGAACAT
TGTACAAATCTACGACATTTTCGACTCGGCGCGTGAAACATTCGTGGTGA
TGGAATATTTAGCTGGCGGCGAACTGCTGGAAATGATCACTGAAAATGAT
CATTTGTCCGAGAAAAACTCCAAGCAAGTGATTCGCGAGGTGTTACAAGC
CGTGCACTATCTTCACGCCCGGGGTATTGTACATAGAGATGTGAAGCCTG
AAAACATCTTGTGCGTGAATCGTGCATGGCCGCTGCGTGTGAAAATTACC
GACTTTGGGCTGTCCAAGAGTGTTGGGGGGACGGATGGCGAGACGGACCG
CGTGATGCGCTCACAGTGCGGCACGGCGTATTATCTAGCGCCGGAGATAG
CAAACAGCCTTCCTTATGGAAAGCCAGTTGACCTTTGGGCATGTGGGGTG
GTGCTATTTGTGATGCTTGCTGGAAAGTTTCCGTTCTACGGCAAATCGGG
CGACAAGTTTATGAGACGGTTACGCGCAGGGGTGCGCTTCCCCAAGGAGG
AGTGGAGTGGGATTTCGGCTGATGCCAAGGCGTTGGTTCGCGGATTGCTG
GACCCGAGCCCTGCGTCGAGACTGACTGCGGCGCAGGCGCTTCAACACCG
GTGGTTGGTGGACGAGGAGGATGTTACAGCGTCTTCGATGCCTTCAAAAG
CGATTGTGGACTCGCAGCACAGGGCGCAACGTCGATTTAACGCGGCTACG
GAGCCGCTCTCTCTGCAGCTTGGACAGTTTTCGGTGTCTAATCGACGCTC
TATGACGAGGGGCGGGACGGAGCTGTCGGTGggagaggaggcggaggtgg
tacgaacggacgagcaggaggagatggagATggaggaggaggaggaggag
gaggaggaAGTGCAACAGGGGCGGGATTACGCGTTTGTAGACGATGTGGT
AGAGGACAACAAGAGCGAGGTGCTGTTTGAGCAACAAGTGCCGTCAGGAG
CGGCCGGGGTGGGGGGCGATGTATGA