Gchil4064.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4064.t1
Unique NameGchil4064.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:302298..303881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707330.1
Preferred nameEPRS
PFAMsGST_C,GST_C_3,HGTP_anticodon,ProRS-C_1,WHEP-TRS,tRNA-synt_1c,tRNA-synt_1c_C,tRNA-synt_2b
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
GOsGO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004819,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006425,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0035770,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
Evalue2.99e-200
EggNOG OGsCOG0008@1|root,KOG1147@2759|Eukaryota
EC6.1.1.15,6.1.1.17
Descriptionglutamyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4064Gchil4064Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 302298..303881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4064.t1.stop1Gchil4064.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 302298..302300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4064.t1.CDS1Gchil4064.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 302298..303881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4064.t1.exon1Gchil4064.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 302298..303881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4064.t1.start1Gchil4064.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 303879..303881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4064.t1Gchil4064.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 302298..303881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4064.t1 ID=Gchil4064.t1|Name=Gchil4064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp
MTKHDSWGDVMRLVKSKGNMDVGLKGAEKGKVVTRFPPEPSGFLHIGHAK
AALLNDYFARHYEGKLIVRFDDTNTEKATQGFEDSIVLDLDRLGIKPDVV
EYTSDYFPKLLEVAERLITEDKAYVDPTPAEEMKAQRLKKEANQYRTQSV
DENMRLWREMLIGSEEGEKCVLRAKFDIRHKNGTLRDPTMYRTKKVPHHR
TGDKYNVYPTYDFSCPLVDSWEGVTHALRSLEYKDREKQYQWFCKAAGVR
CAAIWEFSRLDFVRTVLSKRKLQKLVDIGAARSWDDPRFPTIQGIRRRGM
TIQGLRAFILSQGASRNNTTQEWDKIWTVNKRVIDPLAPRHVALDISDAK
QVTVTNAEEEVKSLPKHKKNPTIGTKYVIYKSKILIEGEDAASIDVGEKV
TFMDWGNMEITHRNEDGSLRAKFLPDDQNFKGTKKVTWLADVEDLVPLKV
CSYSDILTKDRLEEEDDFEDFINKDSEQIKMLKGDINLRLLQKGDTIQLE
RRGYYICDSTVPPLTLIEIPDGKVARR*
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spliced messenger RNA

>Gchil4064.t1 ID=Gchil4064.t1|Name=Gchil4064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00004373_pilon:302298..303881- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAGCATGATTCCTGGGGCGATGTCATGCGCCTTGTGAAAAGCAA
GGGGAATATGGATGTGGGTTTGAAGGGTGCGGAAAAGGGAAAAGTGGTCA
CTCGATTCCCGCCAGAGCCCAGTGGTTTTCTGCATATTGGTCATGCTAAG
GCTGCGCTTCTCAACGATTATTTTGCTAGGCACTACGAAGGAAAACTGAT
TGTTCGCTTTGATGACACAAACACCGAAAAAGCTACTCAAGGATTTGAGG
ATTCCATCGTCCTGGATCTTGATCGTCTAGGTATCAAACCGGACGTCGTT
GAATATACTTCTGACTACTTTCCGAAGCTGCTTGAAGTTGCAGAGCGTCT
TATCACGGAAGACAAGGCATATGTAGACCCTACCCCAGCGGAAGAGATGA
AGGCCCAACGTTTGAAGAAAGAAGCCAACCAATACCGTACACAGAGCGTT
GACGAGAACATGCGATTGTGGCGGGAAATGCTCATCGGTAGTGAGGAAGG
TGAGAAATGCGTATTGCGGGCTAAGTTTGACATTAGACACAAGAACGGGA
CTCTTAGAGATCCTACCATGTATCGTACGAAAAAAGTACCACACCACCGC
ACAGGAGACAAGTACAATGTGTATCCAACGTATGATTTTTCTTGCCCTCT
CGTTGATTCTTGGGAAGGTGTCACTCATGCTTTGCGTTCTCTAGAGTACA
AGGACCGTGAAAAGCAGTATCAGTGGTTTTGCAAAGCTGCTGGAGTACGG
TGTGCGGCCATCTGGGAGTTTTCGAGGCTTGACTTTGTTCGCACCGTCTT
GTCGAAACGCAAGTTACAAAAGCTCGTTGACATTGGAGCTGCCCGTTCTT
GGGATGATCCACGTTTTCCTACCATTCAAGGAATTCGTAGAAGAGGAATG
ACCATTCAAGGATTGCGAGCATTCATTCTATCTCAGGGCGCGTCTAGGAA
CAATACGACGCAGGAATGGGATAAGATTTGGACTGTAAACAAGCGTGTCA
TTGACCCTCTGGCACCTCGTCATGTAGCCTTAGACATATCAGATGCAAAG
CAGGTGACGGTCACCAATGCCGAGGAGGAAGTCAAAAGTTTACCAAAGCA
CAAGAAGAACCCTACAATAGGAACCAAGTATGTAATTTACAAGAGTAAAA
TCTTGATTGAAGGCGAAGACGCTGCAAGCATTGATGTAGGGGAGAAGGTA
ACTTTCATGGATTGGGGTAACATGGAGATTACCCATCGCAATGAGGATGG
AAGCCTACGAGCTAAGTTTCTTCCTGACGACCAGAATTTTAAGGGAACGA
AAAAGGTTACGTGGTTGGCAGATGTGGAAGACCTTGTACCATTAAAGGTT
TGTTCGTATTCGGATATTTTGACCAAGGATCGTCTTGAAGAAGAAGACGA
TTTTGAGGACTTCATTAACAAGGATAGTGAGCAGATCAAAATGTTGAAAG
GAGACATCAATCTTCGACTATTGCAAAAAGGAGATACAATCCAATTAGAG
CGCCGAGGATACTATATCTGTGACAGTACTGTTCCTCCGCTTACGTTGAT
TGAAATTCCCGATGGGAAAGTTGCCAGAAGGTGA
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protein sequence of Gchil4064.t1

>Gchil4064.t1 ID=Gchil4064.t1|Name=Gchil4064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=528bp
MTKHDSWGDVMRLVKSKGNMDVGLKGAEKGKVVTRFPPEPSGFLHIGHAK
AALLNDYFARHYEGKLIVRFDDTNTEKATQGFEDSIVLDLDRLGIKPDVV
EYTSDYFPKLLEVAERLITEDKAYVDPTPAEEMKAQRLKKEANQYRTQSV
DENMRLWREMLIGSEEGEKCVLRAKFDIRHKNGTLRDPTMYRTKKVPHHR
TGDKYNVYPTYDFSCPLVDSWEGVTHALRSLEYKDREKQYQWFCKAAGVR
CAAIWEFSRLDFVRTVLSKRKLQKLVDIGAARSWDDPRFPTIQGIRRRGM
TIQGLRAFILSQGASRNNTTQEWDKIWTVNKRVIDPLAPRHVALDISDAK
QVTVTNAEEEVKSLPKHKKNPTIGTKYVIYKSKILIEGEDAASIDVGEKV
TFMDWGNMEITHRNEDGSLRAKFLPDDQNFKGTKKVTWLADVEDLVPLKV
CSYSDILTKDRLEEEDDFEDFINKDSEQIKMLKGDINLRLLQKGDTIQLE
RRGYYICDSTVPPLTLIEIPDGKVARR*
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mRNA from alignment at tig00004373_pilon:302298..303881-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4064.t1 ID=Gchil4064.t1|Name=Gchil4064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00004373_pilon:302298..303881- (Gracilaria chilensis NLEC103_M9 male)
ATGACGAAGCATGATTCCTGGGGCGATGTCATGCGCCTTGTGAAAAGCAA
GGGGAATATGGATGTGGGTTTGAAGGGTGCGGAAAAGGGAAAAGTGGTCA
CTCGATTCCCGCCAGAGCCCAGTGGTTTTCTGCATATTGGTCATGCTAAG
GCTGCGCTTCTCAACGATTATTTTGCTAGGCACTACGAAGGAAAACTGAT
TGTTCGCTTTGATGACACAAACACCGAAAAAGCTACTCAAGGATTTGAGG
ATTCCATCGTCCTGGATCTTGATCGTCTAGGTATCAAACCGGACGTCGTT
GAATATACTTCTGACTACTTTCCGAAGCTGCTTGAAGTTGCAGAGCGTCT
TATCACGGAAGACAAGGCATATGTAGACCCTACCCCAGCGGAAGAGATGA
AGGCCCAACGTTTGAAGAAAGAAGCCAACCAATACCGTACACAGAGCGTT
GACGAGAACATGCGATTGTGGCGGGAAATGCTCATCGGTAGTGAGGAAGG
TGAGAAATGCGTATTGCGGGCTAAGTTTGACATTAGACACAAGAACGGGA
CTCTTAGAGATCCTACCATGTATCGTACGAAAAAAGTACCACACCACCGC
ACAGGAGACAAGTACAATGTGTATCCAACGTATGATTTTTCTTGCCCTCT
CGTTGATTCTTGGGAAGGTGTCACTCATGCTTTGCGTTCTCTAGAGTACA
AGGACCGTGAAAAGCAGTATCAGTGGTTTTGCAAAGCTGCTGGAGTACGG
TGTGCGGCCATCTGGGAGTTTTCGAGGCTTGACTTTGTTCGCACCGTCTT
GTCGAAACGCAAGTTACAAAAGCTCGTTGACATTGGAGCTGCCCGTTCTT
GGGATGATCCACGTTTTCCTACCATTCAAGGAATTCGTAGAAGAGGAATG
ACCATTCAAGGATTGCGAGCATTCATTCTATCTCAGGGCGCGTCTAGGAA
CAATACGACGCAGGAATGGGATAAGATTTGGACTGTAAACAAGCGTGTCA
TTGACCCTCTGGCACCTCGTCATGTAGCCTTAGACATATCAGATGCAAAG
CAGGTGACGGTCACCAATGCCGAGGAGGAAGTCAAAAGTTTACCAAAGCA
CAAGAAGAACCCTACAATAGGAACCAAGTATGTAATTTACAAGAGTAAAA
TCTTGATTGAAGGCGAAGACGCTGCAAGCATTGATGTAGGGGAGAAGGTA
ACTTTCATGGATTGGGGTAACATGGAGATTACCCATCGCAATGAGGATGG
AAGCCTACGAGCTAAGTTTCTTCCTGACGACCAGAATTTTAAGGGAACGA
AAAAGGTTACGTGGTTGGCAGATGTGGAAGACCTTGTACCATTAAAGGTT
TGTTCGTATTCGGATATTTTGACCAAGGATCGTCTTGAAGAAGAAGACGA
TTTTGAGGACTTCATTAACAAGGATAGTGAGCAGATCAAAATGTTGAAAG
GAGACATCAATCTTCGACTATTGCAAAAAGGAGATACAATCCAATTAGAG
CGCCGAGGATACTATATCTGTGACAGTACTGTTCCTCCGCTTACGTTGAT
TGAAATTCCCGATGGGAAAGTTGCCAGAAGGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:302298..303881-

>Gchil4064.t1 ID=Gchil4064.t1|Name=Gchil4064.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00004373_pilon:302298..303881- (Gracilaria chilensis NLEC103_M9 male)
ATGACGAAGCATGATTCCTGGGGCGATGTCATGCGCCTTGTGAAAAGCAA
GGGGAATATGGATGTGGGTTTGAAGGGTGCGGAAAAGGGAAAAGTGGTCA
CTCGATTCCCGCCAGAGCCCAGTGGTTTTCTGCATATTGGTCATGCTAAG
GCTGCGCTTCTCAACGATTATTTTGCTAGGCACTACGAAGGAAAACTGAT
TGTTCGCTTTGATGACACAAACACCGAAAAAGCTACTCAAGGATTTGAGG
ATTCCATCGTCCTGGATCTTGATCGTCTAGGTATCAAACCGGACGTCGTT
GAATATACTTCTGACTACTTTCCGAAGCTGCTTGAAGTTGCAGAGCGTCT
TATCACGGAAGACAAGGCATATGTAGACCCTACCCCAGCGGAAGAGATGA
AGGCCCAACGTTTGAAGAAAGAAGCCAACCAATACCGTACACAGAGCGTT
GACGAGAACATGCGATTGTGGCGGGAAATGCTCATCGGTAGTGAGGAAGG
TGAGAAATGCGTATTGCGGGCTAAGTTTGACATTAGACACAAGAACGGGA
CTCTTAGAGATCCTACCATGTATCGTACGAAAAAAGTACCACACCACCGC
ACAGGAGACAAGTACAATGTGTATCCAACGTATGATTTTTCTTGCCCTCT
CGTTGATTCTTGGGAAGGTGTCACTCATGCTTTGCGTTCTCTAGAGTACA
AGGACCGTGAAAAGCAGTATCAGTGGTTTTGCAAAGCTGCTGGAGTACGG
TGTGCGGCCATCTGGGAGTTTTCGAGGCTTGACTTTGTTCGCACCGTCTT
GTCGAAACGCAAGTTACAAAAGCTCGTTGACATTGGAGCTGCCCGTTCTT
GGGATGATCCACGTTTTCCTACCATTCAAGGAATTCGTAGAAGAGGAATG
ACCATTCAAGGATTGCGAGCATTCATTCTATCTCAGGGCGCGTCTAGGAA
CAATACGACGCAGGAATGGGATAAGATTTGGACTGTAAACAAGCGTGTCA
TTGACCCTCTGGCACCTCGTCATGTAGCCTTAGACATATCAGATGCAAAG
CAGGTGACGGTCACCAATGCCGAGGAGGAAGTCAAAAGTTTACCAAAGCA
CAAGAAGAACCCTACAATAGGAACCAAGTATGTAATTTACAAGAGTAAAA
TCTTGATTGAAGGCGAAGACGCTGCAAGCATTGATGTAGGGGAGAAGGTA
ACTTTCATGGATTGGGGTAACATGGAGATTACCCATCGCAATGAGGATGG
AAGCCTACGAGCTAAGTTTCTTCCTGACGACCAGAATTTTAAGGGAACGA
AAAAGGTTACGTGGTTGGCAGATGTGGAAGACCTTGTACCATTAAAGGTT
TGTTCGTATTCGGATATTTTGACCAAGGATCGTCTTGAAGAAGAAGACGA
TTTTGAGGACTTCATTAACAAGGATAGTGAGCAGATCAAAATGTTGAAAG
GAGACATCAATCTTCGACTATTGCAAAAAGGAGATACAATCCAATTAGAG
CGCCGAGGATACTATATCTGTGACAGTACTGTTCCTCCGCTTACGTTGAT
TGAAATTCCCGATGGGAAAGTTGCCAGAAGGTGA
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