Gchil4142.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4142.t1
Unique NameGchil4142.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:991152..992558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707519.1
Preferred nameDLAT
PFAMs2-oxoacid_dh,Biotin_lipoyl,E3_binding
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00307
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007625,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030431,GO:0030523,GO:0031974,GO:0032501,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0042802,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0097159,GO:0098798,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Evalue5.09e-138
EggNOG OGsCOG0508@1|root,KOG0557@2759|Eukaryota
EC2.3.1.12
Descriptiondihydrolipoyllysine-residue acetyltransferase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4142Gchil4142Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 991152..992558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1Gchil4142.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 991152..992558 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1.stop1Gchil4142.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 991152..991154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1.CDS1Gchil4142.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 991152..992270 -
Gchil4142.t1.CDS2Gchil4142.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 992403..992558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1.exon1Gchil4142.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 991152..992270 -
Gchil4142.t1.exon2Gchil4142.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 992403..992558 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1.intron1Gchil4142.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 992271..992402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4142.t1.start1Gchil4142.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 992556..992558 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4142.t1 ID=Gchil4142.t1|Name=Gchil4142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=425bp
MPALSPTMEVGTIQEWKKKVGDEIEGGEVIAEIETDKATRSYEYNDDGYL
AKVFFEDGAADVPVGTPMAIVVEEQEDIDAFNDYVPDNAASEAESGSPPQ
EPTPEAQAATPIPPEAPSPAPTTPPAVATQATGERVLASPLARVSAANAG
LSLKSVAGTGPGGRVLAADVQDALVHGVPQPEEQSVDQLPGMPMYTDVEV
SKYKRVTAERLLQSKQTIPHYYLTVECEVDKMLELRSAINAKAKNGEYKI
SVNDFVVKAAAAALRKVPEVNSQWMGDKIRTFHAADISIAVQTEKGLITP
IVKDADRKGLKEISTDVKQLAAKARENALAPEEFMGGTFTISNLGMFGVS
SFSAIVNPPQAAILAVGNSAKKVVPDNSSINGYGTRTVMNVTLSCDHRVV
DGAVGAQWLAFFKSCMEDPVNIIM*
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spliced messenger RNA

>Gchil4142.t1 ID=Gchil4142.t1|Name=Gchil4142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00004373_pilon:991152..992558- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCATTATCTCCGACAATGGAAGTAGGGACCATACAGGAATGGAA
AAAGAAAGTTGGGGACGAAATTGAAGGCGGAGAAGTAATTGCTGAGATCG
AAACTGACAAAGCAACTCGATCATATGAATACAATGATGATGGATACCTC
GCCAAGGTATTTTTTGAAGACGGGGCGGCGGATGTCCCTGTTGGGACACC
AATGGCAATTGTCGTGGAAGAGCAAGAAGATATCGATGCCTTCAATGATT
ACGTTCCGGATAACGCGGCTTCGGAAGCCGAATCGGGCTCCCCCCCACAG
GAACCAACGCCCGAGGCGCAGGCCGCTACTCCGATCCCACCCGAAGCGCC
ATCTCCAGCTCCTACTACACCGCCTGCCGTCGCAACTCAGGCGACCGGAG
AACGAGTGCTTGCATCTCCTTTAGCTCGCGTGTCTGCTGCGAATGCCGGC
TTATCTCTCAAATCTGTGGCTGGAACTGGACCAGGCGGCCGTGTTCTCGC
GGCGGATGTTCAGGATGCATTGGTACACGGTGTGCCGCAACCGGAAGAGC
AGAGTGTCGATCAACTACCAGGAATGCCGATGTACACCGACGTTGAAGTT
TCGAAATACAAGCGTGTGACGGCGGAGCGGCTGCTTCAGTCCAAGCAAAC
CATACCACATTATTATTTAACAGTGGAATGCGAAGTTGATAAAATGCTGG
AGCTACGATCCGCCATCAACGCTAAAGCGAAGAACGGTGAATATAAGATA
AGCGTGAATGACTTTGTCGTGAAAGCAGCAGCTGCCGCCCTTCGCAAGGT
ACCAGAAGTAAATTCGCAATGGATGGGAGATAAAATCAGAACGTTCCACG
CGGCAGATATATCCATTGCCGTGCAGACCGAAAAAGGATTGATAACTCCG
ATTGTCAAGGATGCAGATCGTAAGGGACTCAAAGAGATTTCAACCGATGT
CAAACAGCTTGCAGCAAAGGCAAGAGAAAACGCATTGGCGCCGGAAGAGT
TTATGGGTGGCACGTTCACCATAAGCAACCTTGGCATGTTCGGTGTGAGT
AGCTTCTCAGCAATTGTGAACCCACCACAAGCTGCCATTTTGGCAGTAGG
AAACTCGGCGAAGAAGGTTGTCCCAGATAATTCATCGATAAACGGTTATG
GAACTAGAACTGTGATGAACGTAACATTAAGTTGTGATCATCGCGTTGTG
GATGGGGCGGTAGGCGCGCAATGGTTGGCATTCTTCAAGTCTTGTATGGA
GGACCCTGTGAATATCATCATGTAA
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protein sequence of Gchil4142.t1

>Gchil4142.t1 ID=Gchil4142.t1|Name=Gchil4142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=425bp
MPALSPTMEVGTIQEWKKKVGDEIEGGEVIAEIETDKATRSYEYNDDGYL
AKVFFEDGAADVPVGTPMAIVVEEQEDIDAFNDYVPDNAASEAESGSPPQ
EPTPEAQAATPIPPEAPSPAPTTPPAVATQATGERVLASPLARVSAANAG
LSLKSVAGTGPGGRVLAADVQDALVHGVPQPEEQSVDQLPGMPMYTDVEV
SKYKRVTAERLLQSKQTIPHYYLTVECEVDKMLELRSAINAKAKNGEYKI
SVNDFVVKAAAAALRKVPEVNSQWMGDKIRTFHAADISIAVQTEKGLITP
IVKDADRKGLKEISTDVKQLAAKARENALAPEEFMGGTFTISNLGMFGVS
SFSAIVNPPQAAILAVGNSAKKVVPDNSSINGYGTRTVMNVTLSCDHRVV
DGAVGAQWLAFFKSCMEDPVNIIM*
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mRNA from alignment at tig00004373_pilon:991152..992558-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4142.t1 ID=Gchil4142.t1|Name=Gchil4142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004373_pilon:991152..992558- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCATTATCTCCGACAATGGAAGTAGGGACCATACAGGAATGGAA
AAAGAAAGTTGGGGACGAAATTGAAGGCGGAGAAGTAATTGCTGAGATCG
AAACTGACAAAGCAACTCGATCATATGAATACAATGATGATGGATACCTC
GCCAAGGTAAGGCCGAGTTTTTATTGATTCTTTACCCCTTTCTCGCAATC
GTAATCGAATCGTTGTGCCAAATGCTTCGGAATTCTCTACAACTCGAGAC
GCTAACCTCTTGGATCTGACACTCTCTGACTCGCGTAGGTATTTTTTGAA
GACGGGGCGGCGGATGTCCCTGTTGGGACACCAATGGCAATTGTCGTGGA
AGAGCAAGAAGATATCGATGCCTTCAATGATTACGTTCCGGATAACGCGG
CTTCGGAAGCCGAATCGGGCTCCCCCCCACAGGAACCAACGCCCGAGGCG
CAGGCCGCTACTCCGATCCCACCCGAAGCGCCATCTCCAGCTCCTACTAC
ACCGCCTGCCGTCGCAACTCAGGCGACCGGAGAACGAGTGCTTGCATCTC
CTTTAGCTCGCGTGTCTGCTGCGAATGCCGGCTTATCTCTCAAATCTGTG
GCTGGAACTGGACCAGGCGGCCGTGTTCTCGCGGCGGATGTTCAGGATGC
ATTGGTACACGGTGTGCCGCAACCGGAAGAGCAGAGTGTCGATCAACTAC
CAGGAATGCCGATGTACACCGACGTTGAAGTTTCGAAATACAAGCGTGTG
ACGGCGGAGCGGCTGCTTCAGTCCAAGCAAACCATACCACATTATTATTT
AACAGTGGAATGCGAAGTTGATAAAATGCTGGAGCTACGATCCGCCATCA
ACGCTAAAGCGAAGAACGGTGAATATAAGATAAGCGTGAATGACTTTGTC
GTGAAAGCAGCAGCTGCCGCCCTTCGCAAGGTACCAGAAGTAAATTCGCA
ATGGATGGGAGATAAAATCAGAACGTTCCACGCGGCAGATATATCCATTG
CCGTGCAGACCGAAAAAGGATTGATAACTCCGATTGTCAAGGATGCAGAT
CGTAAGGGACTCAAAGAGATTTCAACCGATGTCAAACAGCTTGCAGCAAA
GGCAAGAGAAAACGCATTGGCGCCGGAAGAGTTTATGGGTGGCACGTTCA
CCATAAGCAACCTTGGCATGTTCGGTGTGAGTAGCTTCTCAGCAATTGTG
AACCCACCACAAGCTGCCATTTTGGCAGTAGGAAACTCGGCGAAGAAGGT
TGTCCCAGATAATTCATCGATAAACGGTTATGGAACTAGAACTGTGATGA
ACGTAACATTAAGTTGTGATCATCGCGTTGTGGATGGGGCGGTAGGCGCG
CAATGGTTGGCATTCTTCAAGTCTTGTATGGAGGACCCTGTGAATATCAT
CATGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:991152..992558-

>Gchil4142.t1 ID=Gchil4142.t1|Name=Gchil4142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00004373_pilon:991152..992558- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGCATTATCTCCGACAATGGAAGTAGGGACCATACAGGAATGGAA
AAAGAAAGTTGGGGACGAAATTGAAGGCGGAGAAGTAATTGCTGAGATCG
AAACTGACAAAGCAACTCGATCATATGAATACAATGATGATGGATACCTC
GCCAAGGTATTTTTTGAAGACGGGGCGGCGGATGTCCCTGTTGGGACACC
AATGGCAATTGTCGTGGAAGAGCAAGAAGATATCGATGCCTTCAATGATT
ACGTTCCGGATAACGCGGCTTCGGAAGCCGAATCGGGCTCCCCCCCACAG
GAACCAACGCCCGAGGCGCAGGCCGCTACTCCGATCCCACCCGAAGCGCC
ATCTCCAGCTCCTACTACACCGCCTGCCGTCGCAACTCAGGCGACCGGAG
AACGAGTGCTTGCATCTCCTTTAGCTCGCGTGTCTGCTGCGAATGCCGGC
TTATCTCTCAAATCTGTGGCTGGAACTGGACCAGGCGGCCGTGTTCTCGC
GGCGGATGTTCAGGATGCATTGGTACACGGTGTGCCGCAACCGGAAGAGC
AGAGTGTCGATCAACTACCAGGAATGCCGATGTACACCGACGTTGAAGTT
TCGAAATACAAGCGTGTGACGGCGGAGCGGCTGCTTCAGTCCAAGCAAAC
CATACCACATTATTATTTAACAGTGGAATGCGAAGTTGATAAAATGCTGG
AGCTACGATCCGCCATCAACGCTAAAGCGAAGAACGGTGAATATAAGATA
AGCGTGAATGACTTTGTCGTGAAAGCAGCAGCTGCCGCCCTTCGCAAGGT
ACCAGAAGTAAATTCGCAATGGATGGGAGATAAAATCAGAACGTTCCACG
CGGCAGATATATCCATTGCCGTGCAGACCGAAAAAGGATTGATAACTCCG
ATTGTCAAGGATGCAGATCGTAAGGGACTCAAAGAGATTTCAACCGATGT
CAAACAGCTTGCAGCAAAGGCAAGAGAAAACGCATTGGCGCCGGAAGAGT
TTATGGGTGGCACGTTCACCATAAGCAACCTTGGCATGTTCGGTGTGAGT
AGCTTCTCAGCAATTGTGAACCCACCACAAGCTGCCATTTTGGCAGTAGG
AAACTCGGCGAAGAAGGTTGTCCCAGATAATTCATCGATAAACGGTTATG
GAACTAGAACTGTGATGAACGTAACATTAAGTTGTGATCATCGCGTTGTG
GATGGGGCGGTAGGCGCGCAATGGTTGGCATTCTTCAAGTCTTGTATGGA
GGACCCTGTGAATATCATCATGTAA
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