Gchil4150.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4150.t1
Unique NameGchil4150.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1037254..1038597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8153.XP_005933430.1
Preferred nameDBR1
PFAMsDBR1,Metallophos
Max annot lvl33208|Metazoa
KEGG koko:K18328
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0008419,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360
Evalue2.72e-110
EggNOG OGsKOG2863@1|root,KOG2863@2759|Eukaryota,38B4T@33154|Opisthokonta,3BA79@33208|Metazoa,3CU1D@33213|Bilateria,47Z8A@7711|Chordata,48Y57@7742|Vertebrata,49SNU@7898|Actinopterygii
DescriptionDebranching enzyme homolog 1 (S. cerevisiae)
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4150Gchil4150Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1037254..1038597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4150.t1.stop1Gchil4150.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1037254..1037256 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4150.t1.CDS1Gchil4150.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1037254..1038597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4150.t1.exon1Gchil4150.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1037254..1038597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4150.t1.start1Gchil4150.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1038595..1038597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4150.t1Gchil4150.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1037254..1038597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4150.t1 ID=Gchil4150.t1|Name=Gchil4150.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MITIRSVLPLWTPVCIPTKLRFRKHQSVPLAALSSSAVHRKRLRPQSRLQ
MKVAVVGCAHGELDNLYAAIKELEQRQSTKVDLIICPGDFQAVRNESDLA
CMACPPKYRDMRSFWKYYNGSIVAPIPTLFVGGNHEASAHLQQLPLGGLV
APNIYFLGNAGVVNFGGLRIAGISGVYTERDYEKPRFEKPPYPKNQIKSV
YHTRKQDVQRLLRLQNPVDIFISHDWPRGIWRHGDLSKLLSAKPFLRHEI
ENGTFGNPGTTEILDAIQPSFWFAAHMHVKFPAIIEHEKGARTKFLALDK
ILPRRDFVQLLDIPTHCSTPQHLVSKPVNVGEEGRVYLDPEWLSILMTEQ
SDPHRTTPVAKEDIEALLFSMTKTGVAQHIDLVNDFQPFAAAHCPSDGRM
SPPTELEFHPYTLKLFECLGMKQGESGPRLLLESSKETEELPRIRGN*
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spliced messenger RNA

>Gchil4150.t1 ID=Gchil4150.t1|Name=Gchil4150.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004373_pilon:1037254..1038597- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTACCATCCGTTCAGTTCTCCCGCTCTGGACACCCGTATGCATTCC
TACTAAACTTCGCTTCAGAAAGCACCAATCAGTCCCTCTCGCCGCTCTGT
CGTCGTCCGCAGTTCACCGAAAGCGTCTCCGTCCGCAGTCTCGATTGCAA
ATGAAAGTCGCCGTTGTCGGCTGCGCTCATGGGGAGCTGGACAATCTCTA
TGCGGCAATCAAAGAGCTAGAACAGCGCCAATCCACCAAAGTTGACCTTA
TTATATGCCCCGGCGACTTTCAAGCCGTACGGAACGAGTCCGACCTTGCG
TGCATGGCATGTCCCCCAAAATACCGCGACATGCGTTCCTTCTGGAAATA
CTACAATGGCTCCATTGTGGCTCCTATCCCAACACTGTTTGTTGGGGGCA
ATCATGAGGCCTCTGCTCACCTCCAACAACTGCCACTTGGAGGCCTTGTG
GCACCCAACATATACTTTCTAGGCAACGCTGGTGTGGTTAACTTCGGAGG
CTTGCGCATCGCTGGGATAAGCGGCGTCTATACTGAGCGAGACTACGAGA
AACCGCGTTTCGAGAAACCGCCGTATCCGAAGAATCAGATCAAGTCTGTC
TATCACACCCGGAAACAGGACGTCCAAAGACTTCTGCGTCTTCAAAACCC
AGTGGACATTTTCATCTCGCATGATTGGCCGCGAGGAATCTGGCGCCATG
GAGACCTTTCGAAGCTTCTCTCTGCTAAACCCTTTCTTCGTCATGAAATA
GAAAATGGTACTTTTGGAAATCCGGGAACAACTGAGATATTGGATGCCAT
TCAGCCATCTTTTTGGTTTGCAGCACATATGCATGTCAAGTTCCCAGCCA
TTATCGAGCACGAAAAAGGCGCGCGCACAAAGTTTTTAGCTCTGGACAAG
ATTCTCCCTCGACGAGATTTTGTTCAGCTTCTTGACATCCCCACGCATTG
TTCAACACCACAACATTTAGTTTCCAAACCTGTGAACGTAGGTGAAGAAG
GCCGAGTGTACCTTGACCCAGAATGGTTGTCAATATTAATGACAGAACAG
AGTGATCCTCACCGAACCACACCAGTCGCGAAGGAAGACATAGAGGCTTT
GCTGTTCTCCATGACGAAAACTGGTGTAGCACAGCATATAGATTTAGTGA
ATGACTTTCAACCGTTTGCCGCTGCGCATTGTCCATCTGACGGGAGAATG
TCTCCACCCACTGAACTCGAGTTCCATCCCTACACTTTGAAGCTGTTTGA
GTGTCTGGGTATGAAACAAGGTGAGTCTGGACCACGCCTTTTACTTGAAT
CATCCAAAGAAACAGAGGAGCTTCCTCGTATTCGTGGCAACTAG
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protein sequence of Gchil4150.t1

>Gchil4150.t1 ID=Gchil4150.t1|Name=Gchil4150.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MITIRSVLPLWTPVCIPTKLRFRKHQSVPLAALSSSAVHRKRLRPQSRLQ
MKVAVVGCAHGELDNLYAAIKELEQRQSTKVDLIICPGDFQAVRNESDLA
CMACPPKYRDMRSFWKYYNGSIVAPIPTLFVGGNHEASAHLQQLPLGGLV
APNIYFLGNAGVVNFGGLRIAGISGVYTERDYEKPRFEKPPYPKNQIKSV
YHTRKQDVQRLLRLQNPVDIFISHDWPRGIWRHGDLSKLLSAKPFLRHEI
ENGTFGNPGTTEILDAIQPSFWFAAHMHVKFPAIIEHEKGARTKFLALDK
ILPRRDFVQLLDIPTHCSTPQHLVSKPVNVGEEGRVYLDPEWLSILMTEQ
SDPHRTTPVAKEDIEALLFSMTKTGVAQHIDLVNDFQPFAAAHCPSDGRM
SPPTELEFHPYTLKLFECLGMKQGESGPRLLLESSKETEELPRIRGN*
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mRNA from alignment at tig00004373_pilon:1037254..1038597-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4150.t1 ID=Gchil4150.t1|Name=Gchil4150.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004373_pilon:1037254..1038597- (Gracilaria chilensis NLEC103_M9 male)
ATGATTACCATCCGTTCAGTTCTCCCGCTCTGGACACCCGTATGCATTCC
TACTAAACTTCGCTTCAGAAAGCACCAATCAGTCCCTCTCGCCGCTCTGT
CGTCGTCCGCAGTTCACCGAAAGCGTCTCCGTCCGCAGTCTCGATTGCAA
ATGAAAGTCGCCGTTGTCGGCTGCGCTCATGGGGAGCTGGACAATCTCTA
TGCGGCAATCAAAGAGCTAGAACAGCGCCAATCCACCAAAGTTGACCTTA
TTATATGCCCCGGCGACTTTCAAGCCGTACGGAACGAGTCCGACCTTGCG
TGCATGGCATGTCCCCCAAAATACCGCGACATGCGTTCCTTCTGGAAATA
CTACAATGGCTCCATTGTGGCTCCTATCCCAACACTGTTTGTTGGGGGCA
ATCATGAGGCCTCTGCTCACCTCCAACAACTGCCACTTGGAGGCCTTGTG
GCACCCAACATATACTTTCTAGGCAACGCTGGTGTGGTTAACTTCGGAGG
CTTGCGCATCGCTGGGATAAGCGGCGTCTATACTGAGCGAGACTACGAGA
AACCGCGTTTCGAGAAACCGCCGTATCCGAAGAATCAGATCAAGTCTGTC
TATCACACCCGGAAACAGGACGTCCAAAGACTTCTGCGTCTTCAAAACCC
AGTGGACATTTTCATCTCGCATGATTGGCCGCGAGGAATCTGGCGCCATG
GAGACCTTTCGAAGCTTCTCTCTGCTAAACCCTTTCTTCGTCATGAAATA
GAAAATGGTACTTTTGGAAATCCGGGAACAACTGAGATATTGGATGCCAT
TCAGCCATCTTTTTGGTTTGCAGCACATATGCATGTCAAGTTCCCAGCCA
TTATCGAGCACGAAAAAGGCGCGCGCACAAAGTTTTTAGCTCTGGACAAG
ATTCTCCCTCGACGAGATTTTGTTCAGCTTCTTGACATCCCCACGCATTG
TTCAACACCACAACATTTAGTTTCCAAACCTGTGAACGTAGGTGAAGAAG
GCCGAGTGTACCTTGACCCAGAATGGTTGTCAATATTAATGACAGAACAG
AGTGATCCTCACCGAACCACACCAGTCGCGAAGGAAGACATAGAGGCTTT
GCTGTTCTCCATGACGAAAACTGGTGTAGCACAGCATATAGATTTAGTGA
ATGACTTTCAACCGTTTGCCGCTGCGCATTGTCCATCTGACGGGAGAATG
TCTCCACCCACTGAACTCGAGTTCCATCCCTACACTTTGAAGCTGTTTGA
GTGTCTGGGTATGAAACAAGGTGAGTCTGGACCACGCCTTTTACTTGAAT
CATCCAAAGAAACAGAGGAGCTTCCTCGTATTCGTGGCAACTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:1037254..1038597-

>Gchil4150.t1 ID=Gchil4150.t1|Name=Gchil4150.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00004373_pilon:1037254..1038597- (Gracilaria chilensis NLEC103_M9 male)
ATGATTACCATCCGTTCAGTTCTCCCGCTCTGGACACCCGTATGCATTCC
TACTAAACTTCGCTTCAGAAAGCACCAATCAGTCCCTCTCGCCGCTCTGT
CGTCGTCCGCAGTTCACCGAAAGCGTCTCCGTCCGCAGTCTCGATTGCAA
ATGAAAGTCGCCGTTGTCGGCTGCGCTCATGGGGAGCTGGACAATCTCTA
TGCGGCAATCAAAGAGCTAGAACAGCGCCAATCCACCAAAGTTGACCTTA
TTATATGCCCCGGCGACTTTCAAGCCGTACGGAACGAGTCCGACCTTGCG
TGCATGGCATGTCCCCCAAAATACCGCGACATGCGTTCCTTCTGGAAATA
CTACAATGGCTCCATTGTGGCTCCTATCCCAACACTGTTTGTTGGGGGCA
ATCATGAGGCCTCTGCTCACCTCCAACAACTGCCACTTGGAGGCCTTGTG
GCACCCAACATATACTTTCTAGGCAACGCTGGTGTGGTTAACTTCGGAGG
CTTGCGCATCGCTGGGATAAGCGGCGTCTATACTGAGCGAGACTACGAGA
AACCGCGTTTCGAGAAACCGCCGTATCCGAAGAATCAGATCAAGTCTGTC
TATCACACCCGGAAACAGGACGTCCAAAGACTTCTGCGTCTTCAAAACCC
AGTGGACATTTTCATCTCGCATGATTGGCCGCGAGGAATCTGGCGCCATG
GAGACCTTTCGAAGCTTCTCTCTGCTAAACCCTTTCTTCGTCATGAAATA
GAAAATGGTACTTTTGGAAATCCGGGAACAACTGAGATATTGGATGCCAT
TCAGCCATCTTTTTGGTTTGCAGCACATATGCATGTCAAGTTCCCAGCCA
TTATCGAGCACGAAAAAGGCGCGCGCACAAAGTTTTTAGCTCTGGACAAG
ATTCTCCCTCGACGAGATTTTGTTCAGCTTCTTGACATCCCCACGCATTG
TTCAACACCACAACATTTAGTTTCCAAACCTGTGAACGTAGGTGAAGAAG
GCCGAGTGTACCTTGACCCAGAATGGTTGTCAATATTAATGACAGAACAG
AGTGATCCTCACCGAACCACACCAGTCGCGAAGGAAGACATAGAGGCTTT
GCTGTTCTCCATGACGAAAACTGGTGTAGCACAGCATATAGATTTAGTGA
ATGACTTTCAACCGTTTGCCGCTGCGCATTGTCCATCTGACGGGAGAATG
TCTCCACCCACTGAACTCGAGTTCCATCCCTACACTTTGAAGCTGTTTGA
GTGTCTGGGTATGAAACAAGGTGAGTCTGGACCACGCCTTTTACTTGAAT
CATCCAAAGAAACAGAGGAGCTTCCTCGTATTCGTGGCAACTAG
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