Gchil3877.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3877.t1
Unique NameGchil3877.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1142634..1143233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008861020.1
Preferred nameTSR3
PFAMsRLI,Ribo_biogen_C
Max annot lvl2759|Eukaryota
KEGG koko:K09140
GOsGO:0000154,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue1.21e-43
EggNOG OGsCOG2042@1|root,KOG3154@2759|Eukaryota
Descriptionribosome biogenesis protein
COG categoryL
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3877Gchil3877Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1142634..1143233 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3877.t1.start1Gchil3877.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1142634..1142636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3877.t1.CDS1Gchil3877.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1142634..1143233 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3877.t1.exon1Gchil3877.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1142634..1143233 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3877.t1.stop1Gchil3877.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1143231..1143233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3877.t1Gchil3877.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1142634..1143233 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3877.t1 ID=Gchil3877.t1|Name=Gchil3877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=200bp
MGTRAISKADSVLAESCGLGVVDCSWARIEEVSFDRLKSGADRLLPFLIA
ANPVNYGKPLKLTCAEALAGGLYIMGFADSARQVLSKFVWGDSFWQLNGD
LLDQYRNCEKSEDVVAVQNAYITACEKEVEERKKSDDPFWGLGRSDEEES
ESEDYGGDIESETGNEVCNANVENMLDAMRVNEDGREEPPSDLTVDSDL*
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spliced messenger RNA

>Gchil3877.t1 ID=Gchil3877.t1|Name=Gchil3877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000010_pilon:1142634..1143233+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAACGCGAGCGATCTCCAAGGCAGATTCTGTGCTTGCAGAAAGCTG
TGGCCTGGGCGTGGTTGACTGTTCTTGGGCAAGGATTGAAGAAGTATCTT
TTGACAGATTGAAAAGCGGAGCTGATCGACTCCTACCATTCCTCATTGCT
GCGAACCCCGTAAACTACGGAAAACCGCTCAAGTTAACATGTGCGGAAGC
TTTGGCTGGAGGCCTGTACATCATGGGATTCGCAGACTCAGCCCGTCAAG
TTCTAAGCAAGTTTGTTTGGGGGGATTCTTTCTGGCAGTTGAATGGAGAC
TTACTAGATCAGTACCGCAATTGCGAAAAAAGCGAAGACGTTGTTGCAGT
TCAAAATGCGTACATCACGGCATGCGAGAAAGAAGTCGAGGAACGAAAGA
AGAGCGATGACCCTTTTTGGGGCTTGGGGAGAAGTGACGAAGAAGAAAGT
GAAAGTGAAGATTACGGAGGCGACATCGAAAGTGAAACTGGTAATGAAGT
TTGCAACGCTAATGTCGAAAATATGTTGGATGCTATGCGCGTCAATGAAG
ATGGACGTGAGGAACCTCCATCTGATCTAACGGTCGATTCAGATTTGTGA
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protein sequence of Gchil3877.t1

>Gchil3877.t1 ID=Gchil3877.t1|Name=Gchil3877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MGTRAISKADSVLAESCGLGVVDCSWARIEEVSFDRLKSGADRLLPFLIA
ANPVNYGKPLKLTCAEALAGGLYIMGFADSARQVLSKFVWGDSFWQLNGD
LLDQYRNCEKSEDVVAVQNAYITACEKEVEERKKSDDPFWGLGRSDEEES
ESEDYGGDIESETGNEVCNANVENMLDAMRVNEDGREEPPSDLTVDSDL*
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mRNA from alignment at tig00000010_pilon:1142634..1143233+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3877.t1 ID=Gchil3877.t1|Name=Gchil3877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000010_pilon:1142634..1143233+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACGCGAGCGATCTCCAAGGCAGATTCTGTGCTTGCAGAAAGCTG
TGGCCTGGGCGTGGTTGACTGTTCTTGGGCAAGGATTGAAGAAGTATCTT
TTGACAGATTGAAAAGCGGAGCTGATCGACTCCTACCATTCCTCATTGCT
GCGAACCCCGTAAACTACGGAAAACCGCTCAAGTTAACATGTGCGGAAGC
TTTGGCTGGAGGCCTGTACATCATGGGATTCGCAGACTCAGCCCGTCAAG
TTCTAAGCAAGTTTGTTTGGGGGGATTCTTTCTGGCAGTTGAATGGAGAC
TTACTAGATCAGTACCGCAATTGCGAAAAAAGCGAAGACGTTGTTGCAGT
TCAAAATGCGTACATCACGGCATGCGAGAAAGAAGTCGAGGAACGAAAGA
AGAGCGATGACCCTTTTTGGGGCTTGGGGAGAAGTGACGAAGAAGAAAGT
GAAAGTGAAGATTACGGAGGCGACATCGAAAGTGAAACTGGTAATGAAGT
TTGCAACGCTAATGTCGAAAATATGTTGGATGCTATGCGCGTCAATGAAG
ATGGACGTGAGGAACCTCCATCTGATCTAACGGTCGATTCAGATTTGTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1142634..1143233+

>Gchil3877.t1 ID=Gchil3877.t1|Name=Gchil3877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000010_pilon:1142634..1143233+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAACGCGAGCGATCTCCAAGGCAGATTCTGTGCTTGCAGAAAGCTG
TGGCCTGGGCGTGGTTGACTGTTCTTGGGCAAGGATTGAAGAAGTATCTT
TTGACAGATTGAAAAGCGGAGCTGATCGACTCCTACCATTCCTCATTGCT
GCGAACCCCGTAAACTACGGAAAACCGCTCAAGTTAACATGTGCGGAAGC
TTTGGCTGGAGGCCTGTACATCATGGGATTCGCAGACTCAGCCCGTCAAG
TTCTAAGCAAGTTTGTTTGGGGGGATTCTTTCTGGCAGTTGAATGGAGAC
TTACTAGATCAGTACCGCAATTGCGAAAAAAGCGAAGACGTTGTTGCAGT
TCAAAATGCGTACATCACGGCATGCGAGAAAGAAGTCGAGGAACGAAAGA
AGAGCGATGACCCTTTTTGGGGCTTGGGGAGAAGTGACGAAGAAGAAAGT
GAAAGTGAAGATTACGGAGGCGACATCGAAAGTGAAACTGGTAATGAAGT
TTGCAACGCTAATGTCGAAAATATGTTGGATGCTATGCGCGTCAATGAAG
ATGGACGTGAGGAACCTCCATCTGATCTAACGGTCGATTCAGATTTGTGA
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