Gchil4036.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4036.t1
Unique NameGchil4036.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:187085..188266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4036Gchil4036Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 187085..188266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1Gchil4036.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 187085..188266 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1.stop1Gchil4036.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 187085..187087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1.CDS1Gchil4036.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 187085..187744 -
Gchil4036.t1.CDS2Gchil4036.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 187820..188266 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1.exon1Gchil4036.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 187085..187744 -
Gchil4036.t1.exon2Gchil4036.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 187820..188266 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1.intron1Gchil4036.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 187745..187819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4036.t1.start1Gchil4036.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 188264..188266 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4036.t1 ID=Gchil4036.t1|Name=Gchil4036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MGIVKVEVSRARNLRRSLFHTPSAVVELYTIPGFPAVAASEPIPGDANPV
WDFTYEYEVNHYPPNRLSFIVVDATRPKATPLGRVLLDVIHPVTSGWFSL
SEDENNSSELFVTVTCKNVCDGRASLSRLMKHEASIFEIGNSTQLELRQS
VRKPFLKLAIRDQFLIKVDETPESSAAWEKILEELAQADEQIENVDSARK
EKTGDESEATSTTHEDKQNKSENNNRVWDGGDADCRAFDVKRESSQKRKH
IELTTEAKAHEESASFEHELDASDHLQNRWSKILSFRIESRKFLQSGGGA
RLKCPKPFTRTKPFTEARKEGFVAHSHSPLESELETGVVVRQNSEPGPHY
LENTECSTLSSKSKDELP*
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spliced messenger RNA

>Gchil4036.t1 ID=Gchil4036.t1|Name=Gchil4036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004373_pilon:187085..188266- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATAGTGAAAGTGGAGGTCTCCAGAGCGCGTAACCTTCGAAGATC
TCTTTTTCACACACCATCAGCGGTCGTGGAGTTGTATACAATTCCAGGAT
TTCCAGCGGTTGCAGCTTCCGAACCTATACCAGGTGACGCAAACCCAGTT
TGGGACTTCACTTATGAGTACGAGGTCAATCATTACCCGCCGAACAGGCT
TTCTTTTATAGTAGTTGATGCTACGCGTCCGAAAGCGACCCCCCTTGGAC
GTGTATTACTGGATGTAATTCATCCGGTGACATCTGGATGGTTTTCTCTT
TCCGAGGATGAAAACAATTCTTCTGAACTGTTTGTCACTGTTACATGCAA
GAACGTGTGCGATGGCCGTGCTTCCTTATCTCGTCTAATGAAGCATGAAG
CCTCAATTTTTGAAATAGGGAATAGCACACAGCTAGAACTGAGGCAATCT
GTGAGAAAGCCATTTCTCAAGCTCGCTATAAGAGACCAATTCCTAATAAA
AGTTGATGAAACCCCCGAGTCGAGTGCGGCATGGGAAAAGATTTTGGAAG
AACTCGCTCAAGCTGATGAACAGATTGAAAATGTGGATTCTGCTAGGAAG
GAGAAGACGGGCGACGAAAGTGAGGCAACGAGTACCACGCATGAGGATAA
GCAAAACAAATCTGAGAACAACAATCGGGTATGGGATGGGGGCGACGCAG
ACTGTCGTGCGTTCGATGTGAAGAGAGAAAGTTCACAAAAAAGAAAACAT
ATCGAGCTCACTACAGAGGCAAAAGCTCATGAAGAGTCTGCGTCTTTTGA
GCATGAATTAGATGCGAGTGATCACCTTCAGAACCGGTGGAGCAAGATTT
TGAGCTTTCGAATAGAATCACGAAAGTTTTTGCAATCTGGAGGAGGTGCA
AGACTTAAGTGTCCAAAGCCCTTCACCCGAACTAAACCTTTCACGGAAGC
ACGAAAAGAGGGTTTTGTGGCTCATTCTCATTCTCCACTTGAAAGTGAGT
TGGAGACAGGGGTTGTAGTTCGGCAGAATTCAGAACCCGGCCCTCACTAT
CTTGAAAACACTGAGTGTAGTACCCTTTCGTCTAAGAGCAAAGATGAGCT
TCCCTGA
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protein sequence of Gchil4036.t1

>Gchil4036.t1 ID=Gchil4036.t1|Name=Gchil4036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MGIVKVEVSRARNLRRSLFHTPSAVVELYTIPGFPAVAASEPIPGDANPV
WDFTYEYEVNHYPPNRLSFIVVDATRPKATPLGRVLLDVIHPVTSGWFSL
SEDENNSSELFVTVTCKNVCDGRASLSRLMKHEASIFEIGNSTQLELRQS
VRKPFLKLAIRDQFLIKVDETPESSAAWEKILEELAQADEQIENVDSARK
EKTGDESEATSTTHEDKQNKSENNNRVWDGGDADCRAFDVKRESSQKRKH
IELTTEAKAHEESASFEHELDASDHLQNRWSKILSFRIESRKFLQSGGGA
RLKCPKPFTRTKPFTEARKEGFVAHSHSPLESELETGVVVRQNSEPGPHY
LENTECSTLSSKSKDELP*
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mRNA from alignment at tig00004373_pilon:187085..188266-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4036.t1 ID=Gchil4036.t1|Name=Gchil4036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00004373_pilon:187085..188266- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAATAGTGAAAGTGGAGGTCTCCAGAGCGCGTAACCTTCGAAGATC
TCTTTTTCACACACCATCAGCGGTCGTGGAGTTGTATACAATTCCAGGAT
TTCCAGCGGTTGCAGCTTCCGAACCTATACCAGGTGACGCAAACCCAGTT
TGGGACTTCACTTATGAGTACGAGGTCAATCATTACCCGCCGAACAGGCT
TTCTTTTATAGTAGTTGATGCTACGCGTCCGAAAGCGACCCCCCTTGGAC
GTGTATTACTGGATGTAATTCATCCGGTGACATCTGGATGGTTTTCTCTT
TCCGAGGATGAAAACAATTCTTCTGAACTGTTTGTCACTGTTACATGCAA
GAACGTGTGCGATGGCCGTGCTTCCTTATCTCGTCTAATGAAGCATGAAG
CCTCAATTTTTGAAATAGGGAATAGCACACAGCTAGAACTGAGGCAAGTA
GCTGCTTCTCCAGGCTTCTTGTTTTGATCGGGTGAGCTCTCGGTAAAGAT
TGAGGTTGTTGGTGTGCCGCAGTCTGTGAGAAAGCCATTTCTCAAGCTCG
CTATAAGAGACCAATTCCTAATAAAAGTTGATGAAACCCCCGAGTCGAGT
GCGGCATGGGAAAAGATTTTGGAAGAACTCGCTCAAGCTGATGAACAGAT
TGAAAATGTGGATTCTGCTAGGAAGGAGAAGACGGGCGACGAAAGTGAGG
CAACGAGTACCACGCATGAGGATAAGCAAAACAAATCTGAGAACAACAAT
CGGGTATGGGATGGGGGCGACGCAGACTGTCGTGCGTTCGATGTGAAGAG
AGAAAGTTCACAAAAAAGAAAACATATCGAGCTCACTACAGAGGCAAAAG
CTCATGAAGAGTCTGCGTCTTTTGAGCATGAATTAGATGCGAGTGATCAC
CTTCAGAACCGGTGGAGCAAGATTTTGAGCTTTCGAATAGAATCACGAAA
GTTTTTGCAATCTGGAGGAGGTGCAAGACTTAAGTGTCCAAAGCCCTTCA
CCCGAACTAAACCTTTCACGGAAGCACGAAAAGAGGGTTTTGTGGCTCAT
TCTCATTCTCCACTTGAAAGTGAGTTGGAGACAGGGGTTGTAGTTCGGCA
GAATTCAGAACCCGGCCCTCACTATCTTGAAAACACTGAGTGTAGTACCC
TTTCGTCTAAGAGCAAAGATGAGCTTCCCTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:187085..188266-

>Gchil4036.t1 ID=Gchil4036.t1|Name=Gchil4036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00004373_pilon:187085..188266- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAATAGTGAAAGTGGAGGTCTCCAGAGCGCGTAACCTTCGAAGATC
TCTTTTTCACACACCATCAGCGGTCGTGGAGTTGTATACAATTCCAGGAT
TTCCAGCGGTTGCAGCTTCCGAACCTATACCAGGTGACGCAAACCCAGTT
TGGGACTTCACTTATGAGTACGAGGTCAATCATTACCCGCCGAACAGGCT
TTCTTTTATAGTAGTTGATGCTACGCGTCCGAAAGCGACCCCCCTTGGAC
GTGTATTACTGGATGTAATTCATCCGGTGACATCTGGATGGTTTTCTCTT
TCCGAGGATGAAAACAATTCTTCTGAACTGTTTGTCACTGTTACATGCAA
GAACGTGTGCGATGGCCGTGCTTCCTTATCTCGTCTAATGAAGCATGAAG
CCTCAATTTTTGAAATAGGGAATAGCACACAGCTAGAACTGAGGCAATCT
GTGAGAAAGCCATTTCTCAAGCTCGCTATAAGAGACCAATTCCTAATAAA
AGTTGATGAAACCCCCGAGTCGAGTGCGGCATGGGAAAAGATTTTGGAAG
AACTCGCTCAAGCTGATGAACAGATTGAAAATGTGGATTCTGCTAGGAAG
GAGAAGACGGGCGACGAAAGTGAGGCAACGAGTACCACGCATGAGGATAA
GCAAAACAAATCTGAGAACAACAATCGGGTATGGGATGGGGGCGACGCAG
ACTGTCGTGCGTTCGATGTGAAGAGAGAAAGTTCACAAAAAAGAAAACAT
ATCGAGCTCACTACAGAGGCAAAAGCTCATGAAGAGTCTGCGTCTTTTGA
GCATGAATTAGATGCGAGTGATCACCTTCAGAACCGGTGGAGCAAGATTT
TGAGCTTTCGAATAGAATCACGAAAGTTTTTGCAATCTGGAGGAGGTGCA
AGACTTAAGTGTCCAAAGCCCTTCACCCGAACTAAACCTTTCACGGAAGC
ACGAAAAGAGGGTTTTGTGGCTCATTCTCATTCTCCACTTGAAAGTGAGT
TGGAGACAGGGGTTGTAGTTCGGCAGAATTCAGAACCCGGCCCTCACTAT
CTTGAAAACACTGAGTGTAGTACCCTTTCGTCTAAGAGCAAAGATGAGCT
TCCCTGA
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