Gchil4248.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4248.t1
Unique NameGchil4248.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1662756..1663853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4248Gchil4248Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1662756..1663853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4248.t1.stop1Gchil4248.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1662756..1662758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4248.t1.CDS1Gchil4248.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1662756..1663853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4248.t1.exon1Gchil4248.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1662756..1663853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4248.t1.start1Gchil4248.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1663851..1663853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4248.t1Gchil4248.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1662756..1663853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4248.t1 ID=Gchil4248.t1|Name=Gchil4248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MTTSSIPTLIIVRGKEQNYLDKGVIPAVAEHILEHLCKKQSSSRPESVSI
VLLLVRQPASVYDSLCKRLSIPPYNVLDAYSEWYSFQCREKEPQLISDPR
KKVHLGDCDTGSKLSTVVADYMKDLFKEEKVTNRIVLIDSLDLLFPGEDI
FNEILNLSDLLSSFHTTANKEQSKLAIVGILGQAQHHPAIVKYPKSLDAI
CDTSVCVSQVPTCDGKPSPPGSGDERDLIRLDIWRRKPSGRVHFEYVTGV
MHWDEYKLSGTETKLNAADDAAAKQSEERDLARTLAEHGLSFRLSLNSKE
REVRANAGLPYLHKDEKLADSAHALHPTYLQVTEESNSSHGLTKEYSSDE
CSDESDEEELFSEDV*
back to top

spliced messenger RNA

>Gchil4248.t1 ID=Gchil4248.t1|Name=Gchil4248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1662756..1663853- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTTCGAGCATACCCACACTGATTATTGTTCGAGGAAAGGAACA
AAACTATCTCGATAAGGGAGTGATTCCCGCAGTGGCAGAGCATATCCTCG
AGCACCTGTGCAAAAAGCAATCGTCATCTAGGCCAGAAAGTGTTTCCATT
GTTTTGCTTTTGGTAAGACAGCCTGCATCCGTCTACGATTCTCTCTGTAA
ACGGCTTTCGATCCCCCCATATAATGTGCTGGACGCTTACTCAGAATGGT
ACTCTTTCCAATGCCGTGAGAAAGAGCCCCAACTCATTTCCGATCCAAGA
AAAAAAGTGCACCTGGGAGATTGCGATACGGGCTCCAAGCTTTCAACAGT
CGTTGCGGATTACATGAAGGACCTTTTTAAGGAAGAAAAAGTGACAAATA
GAATCGTTCTGATTGACTCACTGGATCTGCTATTTCCGGGGGAGGATATC
TTTAATGAGATTCTAAACTTATCTGATCTGCTTTCTTCATTTCACACCAC
GGCAAACAAGGAGCAAAGCAAACTAGCAATTGTTGGAATTCTCGGTCAAG
CACAGCACCATCCAGCCATTGTTAAGTATCCGAAGTCTCTCGATGCAATT
TGTGACACTTCAGTTTGCGTTTCACAAGTTCCGACATGTGACGGAAAACC
TTCCCCACCAGGCAGCGGCGATGAGCGCGATTTGATACGCTTGGACATTT
GGAGAAGGAAGCCCTCGGGGCGGGTACATTTCGAGTATGTTACTGGTGTT
ATGCATTGGGATGAATATAAATTATCGGGAACAGAGACAAAATTGAACGC
AGCAGATGACGCAGCTGCAAAGCAATCTGAGGAACGAGACCTTGCCCGAA
CTCTTGCCGAACATGGTTTGAGCTTCCGACTATCGCTCAATTCCAAAGAG
AGAGAAGTTCGTGCCAATGCTGGACTTCCGTACTTGCATAAAGATGAGAA
GCTTGCTGATTCTGCGCATGCCCTTCATCCTACTTACCTTCAAGTGACAG
AAGAGAGCAATTCAAGTCATGGGCTTACCAAAGAGTATTCCAGCGATGAG
TGCTCTGACGAAAGTGACGAAGAAGAATTATTTTCCGAAGATGTGTGA
back to top

protein sequence of Gchil4248.t1

>Gchil4248.t1 ID=Gchil4248.t1|Name=Gchil4248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MTTSSIPTLIIVRGKEQNYLDKGVIPAVAEHILEHLCKKQSSSRPESVSI
VLLLVRQPASVYDSLCKRLSIPPYNVLDAYSEWYSFQCREKEPQLISDPR
KKVHLGDCDTGSKLSTVVADYMKDLFKEEKVTNRIVLIDSLDLLFPGEDI
FNEILNLSDLLSSFHTTANKEQSKLAIVGILGQAQHHPAIVKYPKSLDAI
CDTSVCVSQVPTCDGKPSPPGSGDERDLIRLDIWRRKPSGRVHFEYVTGV
MHWDEYKLSGTETKLNAADDAAAKQSEERDLARTLAEHGLSFRLSLNSKE
REVRANAGLPYLHKDEKLADSAHALHPTYLQVTEESNSSHGLTKEYSSDE
CSDESDEEELFSEDV*
back to top

mRNA from alignment at tig00004373_pilon:1662756..1663853-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4248.t1 ID=Gchil4248.t1|Name=Gchil4248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1662756..1663853- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACTTCGAGCATACCCACACTGATTATTGTTCGAGGAAAGGAACA
AAACTATCTCGATAAGGGAGTGATTCCCGCAGTGGCAGAGCATATCCTCG
AGCACCTGTGCAAAAAGCAATCGTCATCTAGGCCAGAAAGTGTTTCCATT
GTTTTGCTTTTGGTAAGACAGCCTGCATCCGTCTACGATTCTCTCTGTAA
ACGGCTTTCGATCCCCCCATATAATGTGCTGGACGCTTACTCAGAATGGT
ACTCTTTCCAATGCCGTGAGAAAGAGCCCCAACTCATTTCCGATCCAAGA
AAAAAAGTGCACCTGGGAGATTGCGATACGGGCTCCAAGCTTTCAACAGT
CGTTGCGGATTACATGAAGGACCTTTTTAAGGAAGAAAAAGTGACAAATA
GAATCGTTCTGATTGACTCACTGGATCTGCTATTTCCGGGGGAGGATATC
TTTAATGAGATTCTAAACTTATCTGATCTGCTTTCTTCATTTCACACCAC
GGCAAACAAGGAGCAAAGCAAACTAGCAATTGTTGGAATTCTCGGTCAAG
CACAGCACCATCCAGCCATTGTTAAGTATCCGAAGTCTCTCGATGCAATT
TGTGACACTTCAGTTTGCGTTTCACAAGTTCCGACATGTGACGGAAAACC
TTCCCCACCAGGCAGCGGCGATGAGCGCGATTTGATACGCTTGGACATTT
GGAGAAGGAAGCCCTCGGGGCGGGTACATTTCGAGTATGTTACTGGTGTT
ATGCATTGGGATGAATATAAATTATCGGGAACAGAGACAAAATTGAACGC
AGCAGATGACGCAGCTGCAAAGCAATCTGAGGAACGAGACCTTGCCCGAA
CTCTTGCCGAACATGGTTTGAGCTTCCGACTATCGCTCAATTCCAAAGAG
AGAGAAGTTCGTGCCAATGCTGGACTTCCGTACTTGCATAAAGATGAGAA
GCTTGCTGATTCTGCGCATGCCCTTCATCCTACTTACCTTCAAGTGACAG
AAGAGAGCAATTCAAGTCATGGGCTTACCAAAGAGTATTCCAGCGATGAG
TGCTCTGACGAAAGTGACGAAGAAGAATTATTTTCCGAAGATGTGTGA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:1662756..1663853-

>Gchil4248.t1 ID=Gchil4248.t1|Name=Gchil4248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004373_pilon:1662756..1663853- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACTTCGAGCATACCCACACTGATTATTGTTCGAGGAAAGGAACA
AAACTATCTCGATAAGGGAGTGATTCCCGCAGTGGCAGAGCATATCCTCG
AGCACCTGTGCAAAAAGCAATCGTCATCTAGGCCAGAAAGTGTTTCCATT
GTTTTGCTTTTGGTAAGACAGCCTGCATCCGTCTACGATTCTCTCTGTAA
ACGGCTTTCGATCCCCCCATATAATGTGCTGGACGCTTACTCAGAATGGT
ACTCTTTCCAATGCCGTGAGAAAGAGCCCCAACTCATTTCCGATCCAAGA
AAAAAAGTGCACCTGGGAGATTGCGATACGGGCTCCAAGCTTTCAACAGT
CGTTGCGGATTACATGAAGGACCTTTTTAAGGAAGAAAAAGTGACAAATA
GAATCGTTCTGATTGACTCACTGGATCTGCTATTTCCGGGGGAGGATATC
TTTAATGAGATTCTAAACTTATCTGATCTGCTTTCTTCATTTCACACCAC
GGCAAACAAGGAGCAAAGCAAACTAGCAATTGTTGGAATTCTCGGTCAAG
CACAGCACCATCCAGCCATTGTTAAGTATCCGAAGTCTCTCGATGCAATT
TGTGACACTTCAGTTTGCGTTTCACAAGTTCCGACATGTGACGGAAAACC
TTCCCCACCAGGCAGCGGCGATGAGCGCGATTTGATACGCTTGGACATTT
GGAGAAGGAAGCCCTCGGGGCGGGTACATTTCGAGTATGTTACTGGTGTT
ATGCATTGGGATGAATATAAATTATCGGGAACAGAGACAAAATTGAACGC
AGCAGATGACGCAGCTGCAAAGCAATCTGAGGAACGAGACCTTGCCCGAA
CTCTTGCCGAACATGGTTTGAGCTTCCGACTATCGCTCAATTCCAAAGAG
AGAGAAGTTCGTGCCAATGCTGGACTTCCGTACTTGCATAAAGATGAGAA
GCTTGCTGATTCTGCGCATGCCCTTCATCCTACTTACCTTCAAGTGACAG
AAGAGAGCAATTCAAGTCATGGGCTTACCAAAGAGTATTCCAGCGATGAG
TGCTCTGACGAAAGTGACGAAGAAGAATTATTTTCCGAAGATGTGTGA
back to top