Gchil3797.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3797.t1
Unique Name	Gchil3797.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:459995..461107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005847368.1
PFAMs	UbiA
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC01786
KEGG ko	ko:K02257
KEGG Reaction	R07411
KEGG Pathway	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714
KEGG Module	M00154
Evalue	6.03e-66
EggNOG OGs	COG0109@1\|root,KOG1380@2759\|Eukaryota,37J9A@33090\|Viridiplantae,34H13@3041\|Chlorophyta
EC	2.5.1.141
Description	UbiA prenyltransferase family
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3797	Gchil3797	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 459995..461107 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3797.t1.start1	Gchil3797.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 459995..459997 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3797.t1.CDS1	Gchil3797.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 459995..461107 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3797.t1.exon1	Gchil3797.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 459995..461107 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3797.t1.stop1	Gchil3797.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 461105..461107 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3797.t1	Gchil3797.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 459995..461107 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:459995..461107+
coding sequence from alignment at tig00000010_pilon:459995..461107+

mRNA sequence

>Gchil3797.t1 ID=Gchil3797.t1|Name=Gchil3797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp
MQAAVAPRLGRATQVAHDLLTLSKYRLSALVAFTAGVGYAARSEPTERNE
TDAAFAKYRQLSATVAGTWLAAASANTLNHMYERRSDALMPRTRLRPLPT
GRLAVAHAACFALVTGVSGVALLAVETNRTAAALAAANVLLYSAVYTPLK
PLSTVNTVVGALVGALPPIHGWAAASGGHLLAERERGAFALGTLLFLWQI
PHFHALAVVCRADYAAARLKMLAVSNPRANAIWARRTAAAMLPVGALFTL
TGLTSPAFVWQSALLGCSMYRRAVHMVAHPTSVTSAKHLFRASIWYLPIS
MSLMLIDLVPYASTHEHQQPLSHSHSTTPDRSEIRLQQPWEIMAPFPFLP
VPCGVPAVVLETPHKTPNLS*

spliced messenger RNA

>Gchil3797.t1 ID=Gchil3797.t1|Name=Gchil3797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000010_pilon:459995..461107+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgCAGGCCGCGGTCGCGCCGCGCCTGGGGCGCGCCACGCAGGTGGCGCA
CGATCTGCTCACGCTGTCCAAGTACCGACTAAGCGCGCTGGTGGCGTTCA
CAGCGGGCGTAGGCTACGCCGCGCGCTCCGAACCCACCGAGCGCAACGAG
ACAGACGCCGCGTTCGCCAAGTATCGGCAGCTGTCGGCCACGGTGGCGGG
CACGTGGCTCGCGGCCGCGTCGGCCAACACGCTCAACCACATGTACGAGC
GACGCTCCGACGCGCTCATGCCGCGCACGCGACTGCGCCCGTTGCCGACC
GGTCGTCTTGCCGTTGCGCACGCCGCGTGCTTCGCCCTCGTCACAGGCGT
GTCCGGCGTCGCCTTGTTGGCCGTCGAGACTAATCGCACCGCCGCCGCCC
TGGCTGCCGCCAATGTGCTCTTGTACAGCGCCGTGTACACGCCGCTCAAG
CCGTTGTCCACCGTCAACACCGTCGTGGGCGCGCTCGTGGGTGCGCTGCC
GCCCATTCACGGCTGGGCTGCTGCTAGCGGCGGTCATCTGCTCGCTGAGC
GTGAGCGCGGCGCCTTTGCGCTCGGCACGTTGCTCTTTCTATGGCAGATC
CCGCATTTCCACGCACTGGCAGTTGTGTGTCGCGCCGACTATGCAGCCGC
CCGCTTGAAGATGCTTGCTGTGTCCAATCCCCGCGCCAATGCCATCTGGG
CCCGTCGCACCGCCGCCGCTATGCTGCCCGTGGGCGCCCTCTTCACCCTC
ACCGGCCTCACCTCCCCCGCCTTCGTGTGGCAGTCCGCCCTGCTGGGCTG
CTCCATGTATCGCCGAGCCGTTCACATGGTGGCCCACCCCACTTCCGTCA
CCTCCGCCAAGCACCTCTTTCGCGCCTCCATTTGGTATCTTCCAATCTCC
ATGTCTCTCATGCTTATCGACCTTGTGCCTTACGCCTCAACGCATGAGCA
CCAGCAGCCTCTCTCACACTCGCACTCCACCACCCCCGACCGCTCCGAGA
TTCGCCTGCAGCAACCCTGGGAGATCATGGCGCCCTTCCCGTTTTTGCCC
GTTCCGTGCGGTGTGCCCGCCGTCGTTTTGGAGACGCCCCATAAAACACC
AAACCTGTCTTGA

protein sequence of Gchil3797.t1

>Gchil3797.t1 ID=Gchil3797.t1|Name=Gchil3797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=371bp
MQAAVAPRLGRATQVAHDLLTLSKYRLSALVAFTAGVGYAARSEPTERNE
TDAAFAKYRQLSATVAGTWLAAASANTLNHMYERRSDALMPRTRLRPLPT
GRLAVAHAACFALVTGVSGVALLAVETNRTAAALAAANVLLYSAVYTPLK
PLSTVNTVVGALVGALPPIHGWAAASGGHLLAERERGAFALGTLLFLWQI
PHFHALAVVCRADYAAARLKMLAVSNPRANAIWARRTAAAMLPVGALFTL
TGLTSPAFVWQSALLGCSMYRRAVHMVAHPTSVTSAKHLFRASIWYLPIS
MSLMLIDLVPYASTHEHQQPLSHSHSTTPDRSEIRLQQPWEIMAPFPFLP
VPCGVPAVVLETPHKTPNLS*

mRNA from alignment at tig00000010_pilon:459995..461107+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3797.t1 ID=Gchil3797.t1|Name=Gchil3797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000010_pilon:459995..461107+ (Gracilaria chilensis NLEC103_M9 male)
atgCAGGCCGCGGTCGCGCCGCGCCTGGGGCGCGCCACGCAGGTGGCGCA
CGATCTGCTCACGCTGTCCAAGTACCGACTAAGCGCGCTGGTGGCGTTCA
CAGCGGGCGTAGGCTACGCCGCGCGCTCCGAACCCACCGAGCGCAACGAG
ACAGACGCCGCGTTCGCCAAGTATCGGCAGCTGTCGGCCACGGTGGCGGG
CACGTGGCTCGCGGCCGCGTCGGCCAACACGCTCAACCACATGTACGAGC
GACGCTCCGACGCGCTCATGCCGCGCACGCGACTGCGCCCGTTGCCGACC
GGTCGTCTTGCCGTTGCGCACGCCGCGTGCTTCGCCCTCGTCACAGGCGT
GTCCGGCGTCGCCTTGTTGGCCGTCGAGACTAATCGCACCGCCGCCGCCC
TGGCTGCCGCCAATGTGCTCTTGTACAGCGCCGTGTACACGCCGCTCAAG
CCGTTGTCCACCGTCAACACCGTCGTGGGCGCGCTCGTGGGTGCGCTGCC
GCCCATTCACGGCTGGGCTGCTGCTAGCGGCGGTCATCTGCTCGCTGAGC
GTGAGCGCGGCGCCTTTGCGCTCGGCACGTTGCTCTTTCTATGGCAGATC
CCGCATTTCCACGCACTGGCAGTTGTGTGTCGCGCCGACTATGCAGCCGC
CCGCTTGAAGATGCTTGCTGTGTCCAATCCCCGCGCCAATGCCATCTGGG
CCCGTCGCACCGCCGCCGCTATGCTGCCCGTGGGCGCCCTCTTCACCCTC
ACCGGCCTCACCTCCCCCGCCTTCGTGTGGCAGTCCGCCCTGCTGGGCTG
CTCCATGTATCGCCGAGCCGTTCACATGGTGGCCCACCCCACTTCCGTCA
CCTCCGCCAAGCACCTCTTTCGCGCCTCCATTTGGTATCTTCCAATCTCC
ATGTCTCTCATGCTTATCGACCTTGTGCCTTACGCCTCAACGCATGAGCA
CCAGCAGCCTCTCTCACACTCGCACTCCACCACCCCCGACCGCTCCGAGA
TTCGCCTGCAGCAACCCTGGGAGATCATGGCGCCCTTCCCGTTTTTGCCC
GTTCCGTGCGGTGTGCCCGCCGTCGTTTTGGAGACGCCCCATAAAACACC
AAACCTGTCTTGA

Coding sequence (CDS) from alignment at tig00000010_pilon:459995..461107+

>Gchil3797.t1 ID=Gchil3797.t1|Name=Gchil3797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000010_pilon:459995..461107+ (Gracilaria chilensis NLEC103_M9 male)
atgCAGGCCGCGGTCGCGCCGCGCCTGGGGCGCGCCACGCAGGTGGCGCA
CGATCTGCTCACGCTGTCCAAGTACCGACTAAGCGCGCTGGTGGCGTTCA
CAGCGGGCGTAGGCTACGCCGCGCGCTCCGAACCCACCGAGCGCAACGAG
ACAGACGCCGCGTTCGCCAAGTATCGGCAGCTGTCGGCCACGGTGGCGGG
CACGTGGCTCGCGGCCGCGTCGGCCAACACGCTCAACCACATGTACGAGC
GACGCTCCGACGCGCTCATGCCGCGCACGCGACTGCGCCCGTTGCCGACC
GGTCGTCTTGCCGTTGCGCACGCCGCGTGCTTCGCCCTCGTCACAGGCGT
GTCCGGCGTCGCCTTGTTGGCCGTCGAGACTAATCGCACCGCCGCCGCCC
TGGCTGCCGCCAATGTGCTCTTGTACAGCGCCGTGTACACGCCGCTCAAG
CCGTTGTCCACCGTCAACACCGTCGTGGGCGCGCTCGTGGGTGCGCTGCC
GCCCATTCACGGCTGGGCTGCTGCTAGCGGCGGTCATCTGCTCGCTGAGC
GTGAGCGCGGCGCCTTTGCGCTCGGCACGTTGCTCTTTCTATGGCAGATC
CCGCATTTCCACGCACTGGCAGTTGTGTGTCGCGCCGACTATGCAGCCGC
CCGCTTGAAGATGCTTGCTGTGTCCAATCCCCGCGCCAATGCCATCTGGG
CCCGTCGCACCGCCGCCGCTATGCTGCCCGTGGGCGCCCTCTTCACCCTC
ACCGGCCTCACCTCCCCCGCCTTCGTGTGGCAGTCCGCCCTGCTGGGCTG
CTCCATGTATCGCCGAGCCGTTCACATGGTGGCCCACCCCACTTCCGTCA
CCTCCGCCAAGCACCTCTTTCGCGCCTCCATTTGGTATCTTCCAATCTCC
ATGTCTCTCATGCTTATCGACCTTGTGCCTTACGCCTCAACGCATGAGCA
CCAGCAGCCTCTCTCACACTCGCACTCCACCACCCCCGACCGCTCCGAGA
TTCGCCTGCAGCAACCCTGGGAGATCATGGCGCCCTTCCCGTTTTTGCCC
GTTCCGTGCGGTGTGCCCGCCGTCGTTTTGGAGACGCCCCATAAAACACC
AAACCTGTCTTGA