Gchil4253.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4253.t1
Unique Name	Gchil4253.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1668825..1669406 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr9P26270_001
PFAMs	Arf
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07943
GOs	GO:0000003,GO:0000166,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0005488,GO:0005525,GO:0007021,GO:0007275,GO:0007349,GO:0008150,GO:0009553,GO:0009558,GO:0009561,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009960,GO:0009987,GO:0010154,GO:0016043,GO:0017076,GO:0019001,GO:0022414,GO:0022607,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0048229,GO:0048316,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0061458,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue	1.91e-79
EggNOG OGs	KOG0073@1\|root,KOG0073@2759\|Eukaryota,37M3R@33090\|Viridiplantae,3GFGT@35493\|Streptophyta,3KSCG@4447\|Liliopsida
Description	Belongs to the small GTPase superfamily. Arf family
COG category	U
BRITE	ko00000,ko03036,ko04031

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4253	Gchil4253	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1668825..1669406 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4253.t1.start1	Gchil4253.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1668825..1668827 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4253.t1.CDS1	Gchil4253.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1668825..1669406 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4253.t1.exon1	Gchil4253.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1668825..1669406 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4253.t1.stop1	Gchil4253.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1669404..1669406 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4253.t1	Gchil4253.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1668825..1669406 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1668825..1669406+
coding sequence from alignment at tig00004373_pilon:1668825..1669406+

mRNA sequence

>Gchil4253.t1 ID=Gchil4253.t1|Name=Gchil4253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=194bp
MGLMTILKKVKARDKEMRILVLGLDNAGKTTIMKRLKGEDVQSVSPTLGF
EINTLEFDKYKLNMWDVGGQQTIRTYWRNYFEQTDGIIWVVDSADVARLC
DCRTELENLLMEERLAGASLLILANKQDLCGAISTGQIIEHLALNCMIGK
KRHWQVFPCSALTGENDKNIENRLTKSIEWLVQEVSSRILLAD*

spliced messenger RNA

>Gchil4253.t1 ID=Gchil4253.t1|Name=Gchil4253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004373_pilon:1668825..1669406+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTCATGACCATACTTAAGAAAGTTAAGGCAAGAGACAAAGAGAT
GCGTATTCTCGTGCTCGGATTGGACAATGCCGGCAAAACGACGATTATGA
AACGCCTGAAAGGGGAAGATGTCCAAAGTGTTTCACCCACTCTCGGTTTC
GAAATTAACACGCTGGAATTCGACAAGTATAAGCTGAACATGTGGGATGT
AGGTGGACAGCAAACAATCCGGACATATTGGCGAAACTACTTCGAGCAGA
CAGATGGCATAATTTGGGTAGTTGACTCTGCCGACGTGGCTCGATTATGT
GACTGTCGAACAGAACTGGAAAATCTTCTGATGGAAGAAAGGCTTGCTGG
CGCTTCGCTGCTCATACTAGCAAACAAGCAAGATTTGTGTGGCGCAATAT
CAACAGGACAAATTATTGAACACCTGGCTCTAAATTGTATGATTGGTAAA
AAGCGTCACTGGCAGGTGTTTCCATGTTCAGCTCTTACTGGCGAGAACGA
CAAAAACATCGAAAATCGACTGACAAAAAGCATCGAATGGCTCGTTCAAG
AAGTGTCATCGCGAATTTTGCTCGCGGATTGA

protein sequence of Gchil4253.t1

>Gchil4253.t1 ID=Gchil4253.t1|Name=Gchil4253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MGLMTILKKVKARDKEMRILVLGLDNAGKTTIMKRLKGEDVQSVSPTLGF
EINTLEFDKYKLNMWDVGGQQTIRTYWRNYFEQTDGIIWVVDSADVARLC
DCRTELENLLMEERLAGASLLILANKQDLCGAISTGQIIEHLALNCMIGK
KRHWQVFPCSALTGENDKNIENRLTKSIEWLVQEVSSRILLAD*

mRNA from alignment at tig00004373_pilon:1668825..1669406+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4253.t1 ID=Gchil4253.t1|Name=Gchil4253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00004373_pilon:1668825..1669406+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTCATGACCATACTTAAGAAAGTTAAGGCAAGAGACAAAGAGAT
GCGTATTCTCGTGCTCGGATTGGACAATGCCGGCAAAACGACGATTATGA
AACGCCTGAAAGGGGAAGATGTCCAAAGTGTTTCACCCACTCTCGGTTTC
GAAATTAACACGCTGGAATTCGACAAGTATAAGCTGAACATGTGGGATGT
AGGTGGACAGCAAACAATCCGGACATATTGGCGAAACTACTTCGAGCAGA
CAGATGGCATAATTTGGGTAGTTGACTCTGCCGACGTGGCTCGATTATGT
GACTGTCGAACAGAACTGGAAAATCTTCTGATGGAAGAAAGGCTTGCTGG
CGCTTCGCTGCTCATACTAGCAAACAAGCAAGATTTGTGTGGCGCAATAT
CAACAGGACAAATTATTGAACACCTGGCTCTAAATTGTATGATTGGTAAA
AAGCGTCACTGGCAGGTGTTTCCATGTTCAGCTCTTACTGGCGAGAACGA
CAAAAACATCGAAAATCGACTGACAAAAAGCATCGAATGGCTCGTTCAAG
AAGTGTCATCGCGAATTTTGCTCGCGGATTGA

Coding sequence (CDS) from alignment at tig00004373_pilon:1668825..1669406+

>Gchil4253.t1 ID=Gchil4253.t1|Name=Gchil4253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00004373_pilon:1668825..1669406+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCTCATGACCATACTTAAGAAAGTTAAGGCAAGAGACAAAGAGAT
GCGTATTCTCGTGCTCGGATTGGACAATGCCGGCAAAACGACGATTATGA
AACGCCTGAAAGGGGAAGATGTCCAAAGTGTTTCACCCACTCTCGGTTTC
GAAATTAACACGCTGGAATTCGACAAGTATAAGCTGAACATGTGGGATGT
AGGTGGACAGCAAACAATCCGGACATATTGGCGAAACTACTTCGAGCAGA
CAGATGGCATAATTTGGGTAGTTGACTCTGCCGACGTGGCTCGATTATGT
GACTGTCGAACAGAACTGGAAAATCTTCTGATGGAAGAAAGGCTTGCTGG
CGCTTCGCTGCTCATACTAGCAAACAAGCAAGATTTGTGTGGCGCAATAT
CAACAGGACAAATTATTGAACACCTGGCTCTAAATTGTATGATTGGTAAA
AAGCGTCACTGGCAGGTGTTTCCATGTTCAGCTCTTACTGGCGAGAACGA
CAAAAACATCGAAAATCGACTGACAAAAAGCATCGAATGGCTCGTTCAAG
AAGTGTCATCGCGAATTTTGCTCGCGGATTGA