Gchil4109.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4109.t1
Unique NameGchil4109.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:804512..805600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4109Gchil4109Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 804512..805600 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4109.t1.stop1Gchil4109.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 804512..804514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4109.t1.CDS1Gchil4109.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 804512..805600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4109.t1.exon1Gchil4109.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 804512..805600 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4109.t1.start1Gchil4109.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 805598..805600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4109.t1Gchil4109.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 804512..805600 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4109.t1 ID=Gchil4109.t1|Name=Gchil4109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MDEEDARFYAVASREHDGEEAGGDDDHCAGAPIYVRMRGDAVDVINGASA
YVTSVSRGVLVGSAQRASGKLLHTLLTARDTRASVHDVPDDDQDGSSTKA
QRQATLQVTLPDARALRLETRLRLRAVSAAPLLHALLGALQTGAAALLAM
RATATDGRALRDVGEFRAACAMSRDVVAARALAVAAEAVVCRRLVSDARL
ARAPRVRWAPSRRPPPAAAAAAAAAAAAAVAVAVTARSPFVRQAQAAGAQ
AQAAGAQAQAAGAQAQAAGAQAQAAGAQAQAKGAQAQAKGDQPQGAQAQG
AQAQAKGAQAQAKGDQLQDAQAQGAQAQAKGDQPQGAQAKRAAPPSTPPP
PRKRRRKRAPLV*
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spliced messenger RNA

>Gchil4109.t1 ID=Gchil4109.t1|Name=Gchil4109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004373_pilon:804512..805600- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGGAGGACGCTCGCTTTTACGCGGTGGCCTCGCGCGAGCACGA
CGGCGAGGAGGCGGGGGGGGACGACGACCACTGTGCGGGCGCGCCGATCT
ACGTGCGCATGCGCGGCGACGCAGTGGACGTGATAAACGGCGCGTCGGCG
TACGTAACAAGCGTGTCGCGCGGCGTGCTGGTAGGCAGCGCGCAGCGCGC
CAGCGGCAAGTTACTACACACGTTACTAACGGCGCGAGACACGCGCGCCA
GCGTACATGATGTACCCGACGACGACCAAGACGGCAGCAGCACGAAAGCG
CAGCGGCAAGCCACGCTACAAGTGACGCTACCCGACGCGCGCGCGCTTCG
TCTGGAGACGCGACTGCGGCTGCGCGCGGTGTCGGCGGCGCCGCTGCTGC
ACGCGTTGCTGGGCGCGTTGCAGACGGGCGCGGCCGCGCTGCTCGCGATG
CGCGCGACGGCGACGGACGGACGAGCTTTGCGCGACGTGGGCGAGTTTCG
AGCGGCGTGCGCCATGTCGAGGGACGTGGTTGCGGCGCGCGCGCTTGCGG
TGGCGGCTGAGGCCGTCGTGTGCCGCCGGCTGGTGAGCGACGCTCGACTG
GCGCGCGCGCCGCGCGTGCGTTGGGCGCCGTCGCGACGCCCGCCGCCTGC
GGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGCTGTGGCTG
TGACTGCGCGCTCGCCGTTTGTGCGCCAAGCGCAAGCGGCAGGCGCCCAA
GCGCAAGCGGCAGGCGCTCAAGCGCAAGCGGCAGGCGCTCAAGCGCAAGC
GGCAGGCGCCCAAGCGCAAGCGGCAGGCGCCCAAGCGCAAGCCAAAGGCG
CCCAAGCACAAGCCAAAGGCGATCAGCCGCAAGGCGCCCAAGCGCAAGGC
GCCCAAGCGCAAGCCAAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGCT
GCAAGACGCCCAAGCGCAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGC
CGCAAGGCGCCCAAGCAAAGCGCGCGGCGCCGCCCAGCACGCCGCCGCCG
CCGCGCAAGAGACGCAGAAAGCGCGCGCCACTCGTCTAA
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protein sequence of Gchil4109.t1

>Gchil4109.t1 ID=Gchil4109.t1|Name=Gchil4109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MDEEDARFYAVASREHDGEEAGGDDDHCAGAPIYVRMRGDAVDVINGASA
YVTSVSRGVLVGSAQRASGKLLHTLLTARDTRASVHDVPDDDQDGSSTKA
QRQATLQVTLPDARALRLETRLRLRAVSAAPLLHALLGALQTGAAALLAM
RATATDGRALRDVGEFRAACAMSRDVVAARALAVAAEAVVCRRLVSDARL
ARAPRVRWAPSRRPPPAAAAAAAAAAAAAVAVAVTARSPFVRQAQAAGAQ
AQAAGAQAQAAGAQAQAAGAQAQAAGAQAQAKGAQAQAKGDQPQGAQAQG
AQAQAKGAQAQAKGDQLQDAQAQGAQAQAKGDQPQGAQAKRAAPPSTPPP
PRKRRRKRAPLV*
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mRNA from alignment at tig00004373_pilon:804512..805600-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4109.t1 ID=Gchil4109.t1|Name=Gchil4109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004373_pilon:804512..805600- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGAGGACGCTCGCTTTTACGCGGTGGCCTCGCGCGAGCACGA
CGGCGAGGAGGCGGGGGGGGACGACGACCACTGTGCGGGCGCGCCGATCT
ACGTGCGCATGCGCGGCGACGCAGTGGACGTGATAAACGGCGCGTCGGCG
TACGTAACAAGCGTGTCGCGCGGCGTGCTGGTAGGCAGCGCGCAGCGCGC
CAGCGGCAAGTTACTACACACGTTACTAACGGCGCGAGACACGCGCGCCA
GCGTACATGATGTACCCGACGACGACCAAGACGGCAGCAGCACGAAAGCG
CAGCGGCAAGCCACGCTACAAGTGACGCTACCCGACGCGCGCGCGCTTCG
TCTGGAGACGCGACTGCGGCTGCGCGCGGTGTCGGCGGCGCCGCTGCTGC
ACGCGTTGCTGGGCGCGTTGCAGACGGGCGCGGCCGCGCTGCTCGCGATG
CGCGCGACGGCGACGGACGGACGAGCTTTGCGCGACGTGGGCGAGTTTCG
AGCGGCGTGCGCCATGTCGAGGGACGTGGTTGCGGCGCGCGCGCTTGCGG
TGGCGGCTGAGGCCGTCGTGTGCCGCCGGCTGGTGAGCGACGCTCGACTG
GCGCGCGCGCCGCGCGTGCGTTGGGCGCCGTCGCGACGCCCGCCGCCTGC
GGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGCTGTGGCTG
TGACTGCGCGCTCGCCGTTTGTGCGCCAAGCGCAAGCGGCAGGCGCCCAA
GCGCAAGCGGCAGGCGCTCAAGCGCAAGCGGCAGGCGCTCAAGCGCAAGC
GGCAGGCGCCCAAGCGCAAGCGGCAGGCGCCCAAGCGCAAGCCAAAGGCG
CCCAAGCACAAGCCAAAGGCGATCAGCCGCAAGGCGCCCAAGCGCAAGGC
GCCCAAGCGCAAGCCAAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGCT
GCAAGACGCCCAAGCGCAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGC
CGCAAGGCGCCCAAGCAAAGCGCGCGGCGCCGCCCAGCACGCCGCCGCCG
CCGCGCAAGAGACGCAGAAAGCGCGCGCCACTCGTCTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:804512..805600-

>Gchil4109.t1 ID=Gchil4109.t1|Name=Gchil4109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004373_pilon:804512..805600- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGAGGACGCTCGCTTTTACGCGGTGGCCTCGCGCGAGCACGA
CGGCGAGGAGGCGGGGGGGGACGACGACCACTGTGCGGGCGCGCCGATCT
ACGTGCGCATGCGCGGCGACGCAGTGGACGTGATAAACGGCGCGTCGGCG
TACGTAACAAGCGTGTCGCGCGGCGTGCTGGTAGGCAGCGCGCAGCGCGC
CAGCGGCAAGTTACTACACACGTTACTAACGGCGCGAGACACGCGCGCCA
GCGTACATGATGTACCCGACGACGACCAAGACGGCAGCAGCACGAAAGCG
CAGCGGCAAGCCACGCTACAAGTGACGCTACCCGACGCGCGCGCGCTTCG
TCTGGAGACGCGACTGCGGCTGCGCGCGGTGTCGGCGGCGCCGCTGCTGC
ACGCGTTGCTGGGCGCGTTGCAGACGGGCGCGGCCGCGCTGCTCGCGATG
CGCGCGACGGCGACGGACGGACGAGCTTTGCGCGACGTGGGCGAGTTTCG
AGCGGCGTGCGCCATGTCGAGGGACGTGGTTGCGGCGCGCGCGCTTGCGG
TGGCGGCTGAGGCCGTCGTGTGCCGCCGGCTGGTGAGCGACGCTCGACTG
GCGCGCGCGCCGCGCGTGCGTTGGGCGCCGTCGCGACGCCCGCCGCCTGC
GGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGCTGTGGCTG
TGACTGCGCGCTCGCCGTTTGTGCGCCAAGCGCAAGCGGCAGGCGCCCAA
GCGCAAGCGGCAGGCGCTCAAGCGCAAGCGGCAGGCGCTCAAGCGCAAGC
GGCAGGCGCCCAAGCGCAAGCGGCAGGCGCCCAAGCGCAAGCCAAAGGCG
CCCAAGCACAAGCCAAAGGCGATCAGCCGCAAGGCGCCCAAGCGCAAGGC
GCCCAAGCGCAAGCCAAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGCT
GCAAGACGCCCAAGCGCAAGGCGCCCAAGCGCAAGCCAAAGGCGATCAGC
CGCAAGGCGCCCAAGCAAAGCGCGCGGCGCCGCCCAGCACGCCGCCGCCG
CCGCGCAAGAGACGCAGAAAGCGCGCGCCACTCGTCTAA
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