Gchil4342.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4342.t1
Unique NameGchil4342.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2149836..2150750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_012421-tr
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue1.14e-71
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4342Gchil4342Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2149836..2150750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4342.t1.stop1Gchil4342.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2149836..2149838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4342.t1.CDS1Gchil4342.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2149836..2150750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4342.t1.exon1Gchil4342.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2149836..2150750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4342.t1.start1Gchil4342.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2150748..2150750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4342.t1Gchil4342.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2149836..2150750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4342.t1 ID=Gchil4342.t1|Name=Gchil4342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MDKYIDSLGSATVFSTLDANSGYWQVPIREEDRDKTAFVCHQGLFRFLRM
PFGFTNAPATFQRAIDILLAPFKWRTCLVYLDDIIVFSNNLDDHLEHVRN
VMKILRDAGITLKLKKCEVFTDSVKYLGHIIRPGQLSIDEVRVKSLKEAK
HPKTQTELRSFLGLCNVYCRFVPNFADIPTPLNRLLTKGQPVELEPFGDT
EASAFTALVNAVKSPPILALPNPGLPYEVDTDASANQVGCALFQSSEYGE
RHPIWYWSRSLNVHERNYSVSEKECLAVVWALATLRPYLMGTRFKVHTDH
ACLH*
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spliced messenger RNA

>Gchil4342.t1 ID=Gchil4342.t1|Name=Gchil4342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004373_pilon:2149836..2150750- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAATACATCGACTCCCTTGGGAGCGCTACTGTTTTCTCTACCCT
CGACGCCAATTCGGGCTACTGGCAAGTCCCTATTAGGGAGGAAGATCGAG
ACAAAACGGCTTTCGTGTGTCATCAAGGACTTTTCCGATTCCTGAGGATG
CCTTTTGGGTTTACAAATGCCCCCGCAACGTTTCAACGGGCGATAGACAT
TCTGTTGGCTCCCTTCAAGTGGAGGACGTGTCTAGTGTATTTAGACGACA
TTATTGTCTTCTCCAACAACCTGGATGACCACCTCGAACACGTCAGAAAC
GTAATGAAGATACTCCGCGACGCGGGAATCACCTTGAAACTCAAGAAGTG
CGAGGTTTTCACCGATTCGGTTAAGTATCTGGGTCATATCATCCGTCCCG
GACAGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGCAAAA
CACCCGAAAACTCAAACGGAGTTGCGATCCTTCTTAGGTCTGTGTAACGT
GTATTGCCGATTCGTCCCGAACTTTGCGGATATTCCCACCCCCCTCAACA
GGCTCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACACG
GAAGCGTCTGCCTTCACGGCACTAGTGAATGCCGTAAAATCACCGCCAAT
CTTGGCTCTACCCAATCCTGGGCTCCCTTACGAAGTAGACACCGATGCTA
GTGCAAACCAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGTATGGTGAA
CGTCACCCTATTTGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAA
CTACTCGGTCTCCGAGAAAGAATGTTTAGCCGTTGTGTGGGCCTTAGCTA
CACTTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACTGACCAC
GCATGCTTGCATTGA
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protein sequence of Gchil4342.t1

>Gchil4342.t1 ID=Gchil4342.t1|Name=Gchil4342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MDKYIDSLGSATVFSTLDANSGYWQVPIREEDRDKTAFVCHQGLFRFLRM
PFGFTNAPATFQRAIDILLAPFKWRTCLVYLDDIIVFSNNLDDHLEHVRN
VMKILRDAGITLKLKKCEVFTDSVKYLGHIIRPGQLSIDEVRVKSLKEAK
HPKTQTELRSFLGLCNVYCRFVPNFADIPTPLNRLLTKGQPVELEPFGDT
EASAFTALVNAVKSPPILALPNPGLPYEVDTDASANQVGCALFQSSEYGE
RHPIWYWSRSLNVHERNYSVSEKECLAVVWALATLRPYLMGTRFKVHTDH
ACLH*
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mRNA from alignment at tig00004373_pilon:2149836..2150750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4342.t1 ID=Gchil4342.t1|Name=Gchil4342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004373_pilon:2149836..2150750- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAATACATCGACTCCCTTGGGAGCGCTACTGTTTTCTCTACCCT
CGACGCCAATTCGGGCTACTGGCAAGTCCCTATTAGGGAGGAAGATCGAG
ACAAAACGGCTTTCGTGTGTCATCAAGGACTTTTCCGATTCCTGAGGATG
CCTTTTGGGTTTACAAATGCCCCCGCAACGTTTCAACGGGCGATAGACAT
TCTGTTGGCTCCCTTCAAGTGGAGGACGTGTCTAGTGTATTTAGACGACA
TTATTGTCTTCTCCAACAACCTGGATGACCACCTCGAACACGTCAGAAAC
GTAATGAAGATACTCCGCGACGCGGGAATCACCTTGAAACTCAAGAAGTG
CGAGGTTTTCACCGATTCGGTTAAGTATCTGGGTCATATCATCCGTCCCG
GACAGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGCAAAA
CACCCGAAAACTCAAACGGAGTTGCGATCCTTCTTAGGTCTGTGTAACGT
GTATTGCCGATTCGTCCCGAACTTTGCGGATATTCCCACCCCCCTCAACA
GGCTCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACACG
GAAGCGTCTGCCTTCACGGCACTAGTGAATGCCGTAAAATCACCGCCAAT
CTTGGCTCTACCCAATCCTGGGCTCCCTTACGAAGTAGACACCGATGCTA
GTGCAAACCAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGTATGGTGAA
CGTCACCCTATTTGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAA
CTACTCGGTCTCCGAGAAAGAATGTTTAGCCGTTGTGTGGGCCTTAGCTA
CACTTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACTGACCAC
GCATGCTTGCATTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2149836..2150750-

>Gchil4342.t1 ID=Gchil4342.t1|Name=Gchil4342.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00004373_pilon:2149836..2150750- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAATACATCGACTCCCTTGGGAGCGCTACTGTTTTCTCTACCCT
CGACGCCAATTCGGGCTACTGGCAAGTCCCTATTAGGGAGGAAGATCGAG
ACAAAACGGCTTTCGTGTGTCATCAAGGACTTTTCCGATTCCTGAGGATG
CCTTTTGGGTTTACAAATGCCCCCGCAACGTTTCAACGGGCGATAGACAT
TCTGTTGGCTCCCTTCAAGTGGAGGACGTGTCTAGTGTATTTAGACGACA
TTATTGTCTTCTCCAACAACCTGGATGACCACCTCGAACACGTCAGAAAC
GTAATGAAGATACTCCGCGACGCGGGAATCACCTTGAAACTCAAGAAGTG
CGAGGTTTTCACCGATTCGGTTAAGTATCTGGGTCATATCATCCGTCCCG
GACAGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGCAAAA
CACCCGAAAACTCAAACGGAGTTGCGATCCTTCTTAGGTCTGTGTAACGT
GTATTGCCGATTCGTCCCGAACTTTGCGGATATTCCCACCCCCCTCAACA
GGCTCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACACG
GAAGCGTCTGCCTTCACGGCACTAGTGAATGCCGTAAAATCACCGCCAAT
CTTGGCTCTACCCAATCCTGGGCTCCCTTACGAAGTAGACACCGATGCTA
GTGCAAACCAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGTATGGTGAA
CGTCACCCTATTTGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAA
CTACTCGGTCTCCGAGAAAGAATGTTTAGCCGTTGTGTGGGCCTTAGCTA
CACTTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACTGACCAC
GCATGCTTGCATTGA
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