Gchil4164.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4164.t1
Unique Name	Gchil4164.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:1176950..1178002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005643889.1
PFAMs	3Beta_HSD
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC01163
KEGG ko	ko:K07748
KEGG Reaction	R07494
KEGG Pathway	ko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG Module	M00101
Evalue	5.24e-90
EggNOG OGs	COG0451@1\|root,KOG1430@2759\|Eukaryota,37RRJ@33090\|Viridiplantae,34IBB@3041\|Chlorophyta
EC	1.1.1.170
Description	Belongs to the 3-beta-HSD family
COG category	EI
BiGG Reaction	iRC1080.CRv4_Au5_s12_g3440_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4164	Gchil4164	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 1176950..1178002 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4164.t1.start1	Gchil4164.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 1176950..1176952 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4164.t1.CDS1	Gchil4164.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 1176950..1178002 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4164.t1.exon1	Gchil4164.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 1176950..1178002 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4164.t1.stop1	Gchil4164.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 1178000..1178002 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4164.t1	Gchil4164.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 1176950..1178002 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:1176950..1178002+
coding sequence from alignment at tig00004373_pilon:1176950..1178002+

mRNA sequence

>Gchil4164.t1 ID=Gchil4164.t1|Name=Gchil4164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MVRCLVTGGSGFLGRHLIDALLAKKDPDVRIVVFDIRTYEHHGSVVGAPI
ESFAGTITQLGDVLKVCHEIDIVFHCATANPLDNQNESLMWAVNVEGTKN
LIEACKQCKVPKLVYVSSASVVYDGSPMNGVDENLPYPSKFTDYYSMTKA
KAEQLVLQANRNSLLTCALRPSSIFGERDPSYVPALIESGKQGKTKYVIG
SGKTKWEFTYVRNVADACIKAAEHLTTDSPLGGNAYFITNDETFLFWDHV
GLILDGLGYPKPSVHLPMTLCYVIAAFLEFILLILSPFYKPKKPPVFTRQ
KVRFLTTNRVISCGKAKKHFGYKPSVSLREGTRRTIEYFKHQSQSGPKQH
*

spliced messenger RNA

>Gchil4164.t1 ID=Gchil4164.t1|Name=Gchil4164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004373_pilon:1176950..1178002+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGATGTCTAGTGACGGGGGGGTCTGGCTTTTTGGGTCGTCATCT
AATCGATGCTTTGTTAGCAAAAAAAGATCCTGACGTGCGCATTGTAGTGT
TTGACATCCGAACCTATGAGCATCATGGCTCAGTTGTTGGTGCTCCCATC
GAGAGTTTTGCAGGTACGATCACCCAGTTAGGCGACGTCTTAAAGGTTTG
TCACGAAATCGATATCGTGTTTCATTGCGCAACGGCAAATCCATTAGACA
ATCAGAACGAATCATTGATGTGGGCTGTGAACGTGGAGGGAACAAAGAAT
CTCATTGAGGCTTGTAAACAGTGCAAAGTACCGAAATTGGTGTATGTTTC
CTCCGCAAGCGTTGTATACGATGGTTCCCCGATGAATGGTGTTGATGAAA
ATCTGCCGTATCCATCGAAATTTACCGATTATTACTCGATGACAAAGGCG
AAGGCAGAGCAGTTGGTGCTACAGGCAAATCGAAACTCTCTTCTTACTTG
TGCTCTTCGGCCAAGTAGCATTTTCGGCGAACGCGACCCATCGTATGTAC
CAGCTTTGATAGAAAGCGGCAAACAAGGAAAGACGAAGTATGTGATTGGA
AGCGGAAAGACGAAATGGGAGTTTACATATGTGAGAAACGTTGCCGATGC
TTGCATAAAGGCTGCAGAACACCTTACGACCGACTCCCCACTTGGTGGTA
ACGCATACTTCATAACAAATGACGAAACATTCCTATTCTGGGATCATGTC
GGGCTCATTCTTGACGGCCTGGGATACCCGAAACCTTCGGTGCATCTACC
AATGACTCTTTGTTACGTAATTGCTGCTTTTCTTGAATTCATACTACTAA
TCCTTTCGCCTTTCTATAAACCGAAGAAACCACCGGTTTTCACTCGTCAG
AAAGTGAGATTTCTAACAACTAATAGAGTGATTTCTTGTGGCAAAGCGAA
GAAGCATTTTGGATACAAGCCTTCTGTTTCTTTGAGAGAGGGCACTCGGA
GGACCATAGAATATTTCAAACATCAGTCCCAATCAGGACCAAAGCAGCAC
TAG

protein sequence of Gchil4164.t1

>Gchil4164.t1 ID=Gchil4164.t1|Name=Gchil4164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MVRCLVTGGSGFLGRHLIDALLAKKDPDVRIVVFDIRTYEHHGSVVGAPI
ESFAGTITQLGDVLKVCHEIDIVFHCATANPLDNQNESLMWAVNVEGTKN
LIEACKQCKVPKLVYVSSASVVYDGSPMNGVDENLPYPSKFTDYYSMTKA
KAEQLVLQANRNSLLTCALRPSSIFGERDPSYVPALIESGKQGKTKYVIG
SGKTKWEFTYVRNVADACIKAAEHLTTDSPLGGNAYFITNDETFLFWDHV
GLILDGLGYPKPSVHLPMTLCYVIAAFLEFILLILSPFYKPKKPPVFTRQ
KVRFLTTNRVISCGKAKKHFGYKPSVSLREGTRRTIEYFKHQSQSGPKQH
*

mRNA from alignment at tig00004373_pilon:1176950..1178002+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4164.t1 ID=Gchil4164.t1|Name=Gchil4164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004373_pilon:1176950..1178002+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGATGTCTAGTGACGGGGGGGTCTGGCTTTTTGGGTCGTCATCT
AATCGATGCTTTGTTAGCAAAAAAAGATCCTGACGTGCGCATTGTAGTGT
TTGACATCCGAACCTATGAGCATCATGGCTCAGTTGTTGGTGCTCCCATC
GAGAGTTTTGCAGGTACGATCACCCAGTTAGGCGACGTCTTAAAGGTTTG
TCACGAAATCGATATCGTGTTTCATTGCGCAACGGCAAATCCATTAGACA
ATCAGAACGAATCATTGATGTGGGCTGTGAACGTGGAGGGAACAAAGAAT
CTCATTGAGGCTTGTAAACAGTGCAAAGTACCGAAATTGGTGTATGTTTC
CTCCGCAAGCGTTGTATACGATGGTTCCCCGATGAATGGTGTTGATGAAA
ATCTGCCGTATCCATCGAAATTTACCGATTATTACTCGATGACAAAGGCG
AAGGCAGAGCAGTTGGTGCTACAGGCAAATCGAAACTCTCTTCTTACTTG
TGCTCTTCGGCCAAGTAGCATTTTCGGCGAACGCGACCCATCGTATGTAC
CAGCTTTGATAGAAAGCGGCAAACAAGGAAAGACGAAGTATGTGATTGGA
AGCGGAAAGACGAAATGGGAGTTTACATATGTGAGAAACGTTGCCGATGC
TTGCATAAAGGCTGCAGAACACCTTACGACCGACTCCCCACTTGGTGGTA
ACGCATACTTCATAACAAATGACGAAACATTCCTATTCTGGGATCATGTC
GGGCTCATTCTTGACGGCCTGGGATACCCGAAACCTTCGGTGCATCTACC
AATGACTCTTTGTTACGTAATTGCTGCTTTTCTTGAATTCATACTACTAA
TCCTTTCGCCTTTCTATAAACCGAAGAAACCACCGGTTTTCACTCGTCAG
AAAGTGAGATTTCTAACAACTAATAGAGTGATTTCTTGTGGCAAAGCGAA
GAAGCATTTTGGATACAAGCCTTCTGTTTCTTTGAGAGAGGGCACTCGGA
GGACCATAGAATATTTCAAACATCAGTCCCAATCAGGACCAAAGCAGCAC
TAG

Coding sequence (CDS) from alignment at tig00004373_pilon:1176950..1178002+

>Gchil4164.t1 ID=Gchil4164.t1|Name=Gchil4164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00004373_pilon:1176950..1178002+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGATGTCTAGTGACGGGGGGGTCTGGCTTTTTGGGTCGTCATCT
AATCGATGCTTTGTTAGCAAAAAAAGATCCTGACGTGCGCATTGTAGTGT
TTGACATCCGAACCTATGAGCATCATGGCTCAGTTGTTGGTGCTCCCATC
GAGAGTTTTGCAGGTACGATCACCCAGTTAGGCGACGTCTTAAAGGTTTG
TCACGAAATCGATATCGTGTTTCATTGCGCAACGGCAAATCCATTAGACA
ATCAGAACGAATCATTGATGTGGGCTGTGAACGTGGAGGGAACAAAGAAT
CTCATTGAGGCTTGTAAACAGTGCAAAGTACCGAAATTGGTGTATGTTTC
CTCCGCAAGCGTTGTATACGATGGTTCCCCGATGAATGGTGTTGATGAAA
ATCTGCCGTATCCATCGAAATTTACCGATTATTACTCGATGACAAAGGCG
AAGGCAGAGCAGTTGGTGCTACAGGCAAATCGAAACTCTCTTCTTACTTG
TGCTCTTCGGCCAAGTAGCATTTTCGGCGAACGCGACCCATCGTATGTAC
CAGCTTTGATAGAAAGCGGCAAACAAGGAAAGACGAAGTATGTGATTGGA
AGCGGAAAGACGAAATGGGAGTTTACATATGTGAGAAACGTTGCCGATGC
TTGCATAAAGGCTGCAGAACACCTTACGACCGACTCCCCACTTGGTGGTA
ACGCATACTTCATAACAAATGACGAAACATTCCTATTCTGGGATCATGTC
GGGCTCATTCTTGACGGCCTGGGATACCCGAAACCTTCGGTGCATCTACC
AATGACTCTTTGTTACGTAATTGCTGCTTTTCTTGAATTCATACTACTAA
TCCTTTCGCCTTTCTATAAACCGAAGAAACCACCGGTTTTCACTCGTCAG
AAAGTGAGATTTCTAACAACTAATAGAGTGATTTCTTGTGGCAAAGCGAA
GAAGCATTTTGGATACAAGCCTTCTGTTTCTTTGAGAGAGGGCACTCGGA
GGACCATAGAATATTTCAAACATCAGTCCCAATCAGGACCAAAGCAGCAC
TAG