Gchil3890.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3890.t1
Unique NameGchil3890.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1267813..1268800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706176.1
Preferred nameARL5
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K06972,ko:K07950
Evalue2.08e-78
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko01000,ko01002,ko04031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3890Gchil3890Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1267813..1268800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1Gchil3890.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1267813..1268800 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1.stop1Gchil3890.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1267813..1267815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1.CDS1Gchil3890.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1267813..1267887 -
Gchil3890.t1.CDS2Gchil3890.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1267975..1268385 -
Gchil3890.t1.CDS3Gchil3890.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1268497..1268582 -
Gchil3890.t1.CDS4Gchil3890.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1268676..1268709 -
Gchil3890.t1.CDS5Gchil3890.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1268792..1268800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1.exon1Gchil3890.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1267813..1267887 -
Gchil3890.t1.exon2Gchil3890.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1267975..1268385 -
Gchil3890.t1.exon3Gchil3890.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1268497..1268582 -
Gchil3890.t1.exon4Gchil3890.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1268676..1268709 -
Gchil3890.t1.exon5Gchil3890.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1268792..1268800 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1.intron1Gchil3890.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1267888..1267974 -
Gchil3890.t1.intron2Gchil3890.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1268386..1268496 -
Gchil3890.t1.intron3Gchil3890.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1268583..1268675 -
Gchil3890.t1.intron4Gchil3890.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1268710..1268791 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3890.t1.start1Gchil3890.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1268798..1268800 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3890.t1 ID=Gchil3890.t1|Name=Gchil3890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=205bp
MSFLVFSQDLHKTHSAQLFQSYVAMGILFSNLWRRISGFREVKICMIGLD
AAGKTTILYKLHLGEVVSTYPTIGSNVEEVSYKNMSFQVWDLGGQDMLRQ
TWKTYFVNTHALIMVVDSADVKRLDLARTELHAVLDTDELRDSCVLIFAN
KQDLKESLTAAELSEALALHTIRTHDWHIQACSAIKGEGLYEGLEWISTH
VRQE*
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spliced messenger RNA

>Gchil3890.t1 ID=Gchil3890.t1|Name=Gchil3890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000010_pilon:1267813..1268800- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTCCTTGTTTTTTCCCAGGACTTGCACAAGACGCATTCAGCCCA
ACTTTTTCAATCGTATGTTGCGATGGGGATTTTGTTCTCAAACCTATGGA
GAAGAATTTCAGGCTTTCGCGAAGTAAAGATATGCATGATTGGACTCGAT
GCTGCCGGAAAGACCACCATTCTTTACAAGCTCCATCTTGGAGAGGTAGT
ATCAACGTACCCCACAATTGGTTCCAATGTCGAAGAGGTTTCATATAAAA
ATATGAGCTTCCAGGTTTGGGATCTAGGTGGTCAAGATATGCTTCGTCAG
ACGTGGAAAACGTACTTTGTAAATACTCATGCGCTCATAATGGTTGTGGA
TTCCGCCGATGTAAAGCGTTTGGATCTGGCAAGAACCGAGCTCCACGCCG
TTCTTGATACTGACGAGCTTCGCGATAGCTGCGTGCTGATCTTTGCTAAC
AAGCAAGATCTCAAAGAGTCATTAACCGCAGCTGAACTTTCTGAAGCCTT
AGCTTTGCACACCATTCGCACACATGACTGGCACATACAAGCATGCAGTG
CCATCAAAGGTGAAGGTCTTTACGAAGGATTGGAATGGATTTCAACACAT
GTTCGACAAGAATGA
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protein sequence of Gchil3890.t1

>Gchil3890.t1 ID=Gchil3890.t1|Name=Gchil3890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MSFLVFSQDLHKTHSAQLFQSYVAMGILFSNLWRRISGFREVKICMIGLD
AAGKTTILYKLHLGEVVSTYPTIGSNVEEVSYKNMSFQVWDLGGQDMLRQ
TWKTYFVNTHALIMVVDSADVKRLDLARTELHAVLDTDELRDSCVLIFAN
KQDLKESLTAAELSEALALHTIRTHDWHIQACSAIKGEGLYEGLEWISTH
VRQE*
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mRNA from alignment at tig00000010_pilon:1267813..1268800-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3890.t1 ID=Gchil3890.t1|Name=Gchil3890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=988bp|location=Sequence derived from alignment at tig00000010_pilon:1267813..1268800- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTTCGTGAGTTCACCGCTGCCACTGTCTTATTTCTGGAATTTGTC
ACCGTAACCAATTCAACAAAACAATTTGATTTGTGAGCCAGCTTGTTTTT
TCCCAGGACTTGCACAAGACGCATTGTTGGACGCTCACCTTCAGGTCAAA
TTGGCTTTGCTTTCTCTGTGAGAACCTAAACGGCGCCAGTTGACCGTGTG
TGTGCGAGCTTTTGGCAGCAGCCCAACTTTTTCAATCGTATGTTGCGATG
GGGATTTTGTTCTCAAACCTATGGAGAAGAATTTCAGGCTTTCGCGAAGT
AAAGGTTCGTTGTGAACACTCTACGTATTCAATGCAGCGATAGAGTTTTT
CTATTCTCCATCTACGACTGGTTTTCGGCGCGACTGCTAACGTGACATTA
TTAACATTGTCGCAGATATGCATGATTGGACTCGATGCTGCCGGAAAGAC
CACCATTCTTTACAAGCTCCATCTTGGAGAGGTAGTATCAACGTACCCCA
CAATTGGTTCCAATGTCGAAGAGGTTTCATATAAAAATATGAGCTTCCAG
GTTTGGGATCTAGGTGGTCAAGATATGCTTCGTCAGACGTGGAAAACGTA
CTTTGTAAATACTCATGCGCTCATAATGGTTGTGGATTCCGCCGATGTAA
AGCGTTTGGATCTGGCAAGAACCGAGCTCCACGCCGTTCTTGATACTGAC
GAGCTTCGCGATAGCTGCGTGCTGATCTTTGCTAACAAGCAAGATCTCAA
AGAGTCATTAACCGCAGCTGAACTTTCTGAAGCCTTAGCTTTGCACACCA
TTCGCACACATGACTGGCACATACAAGTAAGCTATTGAATTCACCCATTT
ATCAATTGTAATGCAACTATTAAGCTCCTGACATCATAGTTGTTTCATTT
TCCGTCTTCAAAGGCATGCAGTGCCATCAAAGGTGAAGGTCTTTACGAAG
GATTGGAATGGATTTCAACACATGTTCGACAAGAATGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1267813..1268800-

>Gchil3890.t1 ID=Gchil3890.t1|Name=Gchil3890.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000010_pilon:1267813..1268800- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTTCCTTGTTTTTTCCCAGGACTTGCACAAGACGCATTCAGCCCA
ACTTTTTCAATCGTATGTTGCGATGGGGATTTTGTTCTCAAACCTATGGA
GAAGAATTTCAGGCTTTCGCGAAGTAAAGATATGCATGATTGGACTCGAT
GCTGCCGGAAAGACCACCATTCTTTACAAGCTCCATCTTGGAGAGGTAGT
ATCAACGTACCCCACAATTGGTTCCAATGTCGAAGAGGTTTCATATAAAA
ATATGAGCTTCCAGGTTTGGGATCTAGGTGGTCAAGATATGCTTCGTCAG
ACGTGGAAAACGTACTTTGTAAATACTCATGCGCTCATAATGGTTGTGGA
TTCCGCCGATGTAAAGCGTTTGGATCTGGCAAGAACCGAGCTCCACGCCG
TTCTTGATACTGACGAGCTTCGCGATAGCTGCGTGCTGATCTTTGCTAAC
AAGCAAGATCTCAAAGAGTCATTAACCGCAGCTGAACTTTCTGAAGCCTT
AGCTTTGCACACCATTCGCACACATGACTGGCACATACAAGCATGCAGTG
CCATCAAAGGTGAAGGTCTTTACGAAGGATTGGAATGGATTTCAACACAT
GTTCGACAAGAATGA
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