Gchil3904.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3904.t1
Unique NameGchil3904.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1316146..1316842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002740523.1
Preferred nameSSR2
PFAMsTRAP_beta
Max annot lvl33208|Metazoa
KEGG koko:K13250
KEGG Pathwayko04141,map04141
KEGG ModuleM00402
GOsGO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005789,GO:0006605,GO:0006612,GO:0006613,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0042175,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048500,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0090150,GO:0098827,GO:1990904
Evalue1.92e-10
EggNOG OGsKOG3317@1|root,KOG3317@2759|Eukaryota,38HIF@33154|Opisthokonta,3BCMD@33208|Metazoa,3CU8J@33213|Bilateria
Descriptioncotranslational protein targeting to membrane
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3904Gchil3904Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1316146..1316842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1Gchil3904.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1316146..1316842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1.stop1Gchil3904.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1316146..1316148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1.CDS1Gchil3904.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1316146..1316539 -
Gchil3904.t1.CDS2Gchil3904.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1316646..1316842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1.exon1Gchil3904.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1316146..1316539 -
Gchil3904.t1.exon2Gchil3904.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1316646..1316842 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1.intron1Gchil3904.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1316540..1316645 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3904.t1.start1Gchil3904.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1316840..1316842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3904.t1 ID=Gchil3904.t1|Name=Gchil3904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=197bp
MTRAIHPLCARLALGALLVALLLTLTHADHQAPSRALLALHRDMDGDLVA
SRNVSITYHVHNVGLSLAQQVALKDLSFPASRFHTFGAVARGAWSSIAPG
ESQTHQLIVAPLRAGELFVSPASVSYTDDGKQRVTKLAVDDSLRVEDLLS
YKRRTDKHTMELSLYALAFFLFCVAPYCFSIFLQRVVHRSTTKKKN*
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spliced messenger RNA

>Gchil3904.t1 ID=Gchil3904.t1|Name=Gchil3904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000010_pilon:1316146..1316842- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCGCGATCCACCCGCTGTGTGCGCGCCTGGCGCTGGGCGCCCT
CCTGGTCGCCCTGCTGCTGACGCTGACGCACGCCGACCACCAGGCGCCGT
CGCGCGCGCTGCTCGCGCTTCATCGCGACATGGACGGCGACCTCGTGGCG
TCGCGAAACGTCTCCATCACCTACCACGTGCATAACGTCGGTCTGAGTCT
TGCCCAGCAGGTCGCGCTCAAGGATCTCTCCTTTCCAGCCTCTCGCTTCC
ACACCTTTGGCGCCGTCGCTAGAGGTGCCTGGTCTTCTATTGCTCCGGGC
GAATCGCAAACGCATCAGCTCATTGTTGCGCCCCTGCGCGCTGGGGAGCT
TTTCGTTTCGCCGGCCAGTGTGTCATACACCGATGACGGCAAACAGCGAG
TCACCAAGCTGGCCGTCGACGATTCCTTGCGTGTTGAGGATCTCTTGTCA
TATAAGCGTCGTACCGATAAGCATACAATGGAGTTGTCTTTGTATGCTCT
TGCTTTCTTCCTGTTCTGCGTCGCTCCGTATTGTTTTAGCATCTTCTTGC
AACGCGTCGTCCATCGCTCTACAACTAAGAAAAAGAACTAA
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protein sequence of Gchil3904.t1

>Gchil3904.t1 ID=Gchil3904.t1|Name=Gchil3904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=197bp
MTRAIHPLCARLALGALLVALLLTLTHADHQAPSRALLALHRDMDGDLVA
SRNVSITYHVHNVGLSLAQQVALKDLSFPASRFHTFGAVARGAWSSIAPG
ESQTHQLIVAPLRAGELFVSPASVSYTDDGKQRVTKLAVDDSLRVEDLLS
YKRRTDKHTMELSLYALAFFLFCVAPYCFSIFLQRVVHRSTTKKKN*
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mRNA from alignment at tig00000010_pilon:1316146..1316842-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3904.t1 ID=Gchil3904.t1|Name=Gchil3904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=697bp|location=Sequence derived from alignment at tig00000010_pilon:1316146..1316842- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCGCGATCCACCCGCTGTGTGCGCGCCTGGCGCTGGGCGCCCT
CCTGGTCGCCCTGCTGCTGACGCTGACGCACGCCGACCACCAGGCGCCGT
CGCGCGCGCTGCTCGCGCTTCATCGCGACATGGACGGCGACCTCGTGGCG
TCGCGAAACGTCTCCATCACCTACCACGTGCATAACGTCGGTCTGAGGTA
CGTCTCCTTCTCATTGCCGCCCTTCTTTCATCATCCTCATTACTCACCTT
ACTTCTCCCATTCGTTCCCCTTCCATTTGGTGTGATTTCGTGCCGCGATG
CAGTCTTGCCCAGCAGGTCGCGCTCAAGGATCTCTCCTTTCCAGCCTCTC
GCTTCCACACCTTTGGCGCCGTCGCTAGAGGTGCCTGGTCTTCTATTGCT
CCGGGCGAATCGCAAACGCATCAGCTCATTGTTGCGCCCCTGCGCGCTGG
GGAGCTTTTCGTTTCGCCGGCCAGTGTGTCATACACCGATGACGGCAAAC
AGCGAGTCACCAAGCTGGCCGTCGACGATTCCTTGCGTGTTGAGGATCTC
TTGTCATATAAGCGTCGTACCGATAAGCATACAATGGAGTTGTCTTTGTA
TGCTCTTGCTTTCTTCCTGTTCTGCGTCGCTCCGTATTGTTTTAGCATCT
TCTTGCAACGCGTCGTCCATCGCTCTACAACTAAGAAAAAGAACTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1316146..1316842-

>Gchil3904.t1 ID=Gchil3904.t1|Name=Gchil3904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000010_pilon:1316146..1316842- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCGCGATCCACCCGCTGTGTGCGCGCCTGGCGCTGGGCGCCCT
CCTGGTCGCCCTGCTGCTGACGCTGACGCACGCCGACCACCAGGCGCCGT
CGCGCGCGCTGCTCGCGCTTCATCGCGACATGGACGGCGACCTCGTGGCG
TCGCGAAACGTCTCCATCACCTACCACGTGCATAACGTCGGTCTGAGTCT
TGCCCAGCAGGTCGCGCTCAAGGATCTCTCCTTTCCAGCCTCTCGCTTCC
ACACCTTTGGCGCCGTCGCTAGAGGTGCCTGGTCTTCTATTGCTCCGGGC
GAATCGCAAACGCATCAGCTCATTGTTGCGCCCCTGCGCGCTGGGGAGCT
TTTCGTTTCGCCGGCCAGTGTGTCATACACCGATGACGGCAAACAGCGAG
TCACCAAGCTGGCCGTCGACGATTCCTTGCGTGTTGAGGATCTCTTGTCA
TATAAGCGTCGTACCGATAAGCATACAATGGAGTTGTCTTTGTATGCTCT
TGCTTTCTTCCTGTTCTGCGTCGCTCCGTATTGTTTTAGCATCTTCTTGC
AACGCGTCGTCCATCGCTCTACAACTAAGAAAAAGAACTAA
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