Gchil9062.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9062.t1
Unique Name	Gchil9062.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	552

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:1264810..1266465 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003292960.1
PFAMs	ANTH,Pkinase
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K08853
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0030100,GO:0032879,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0060627,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	9.53e-45
EggNOG OGs	KOG1989@1\|root,KOG1989@2759\|Eukaryota,3X8R7@554915\|Amoebozoa
EC	2.7.11.1
Description	Protein tyrosine kinase
COG category	T
BRITE	ko00000,ko01000,ko01001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9062	Gchil9062	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 1264810..1266465 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9062.t1.start1	Gchil9062.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 1264810..1264812 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9062.t1.CDS1	Gchil9062.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 1264810..1266465 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9062.t1.exon1	Gchil9062.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 1264810..1266465 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9062.t1.stop1	Gchil9062.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 1266463..1266465 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9062.t1	Gchil9062.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 1264810..1266465 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:1264810..1266465+
coding sequence from alignment at tig00004370_pilon:1264810..1266465+

mRNA sequence

>Gchil9062.t1 ID=Gchil9062.t1|Name=Gchil9062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp
MFKSLLKAAQSLERGMDSAFSNAPASHTAFKNATLDFAPFSVRLGSVFAE
GGYSFIHVATPLSSNAPSNARFAVKRMSCTEQESKRQAHIEIDFLRKLPA
HRNLVKFYDAIFHQGHAFLLFELLDGGTLPEILSRSNLTSQKKLTILVDV
TSAVVHLHSQQPPIFIRDVKLENVLYDRLQRCYKLCDFGSATQHTCCPVS
RADILALEEEIANNCTSMYRAPELVDLYSKPFICERADVWSLGCIWYALL
FGSLPFDGSSSLQITTGLASIPTQPTYPHQFISLLEKMLVVDPAHRYDSF
QVLEHLHRILGRQTDPQVISVGNELRRRRFDDFGIDATSRAAVESGSAVS
HSKELEESDSCGPVQPVSQSLIGDLDELLSVSERPTSDTKSVNDKGINSG
WADFGAAFTKPATDRVSKMASTASSNFFLPELAMSTSSQKPKGTCTRATA
GPPQSVDIRPGGAYERNLSRRSPGYEPSSTSTVPVLTRNQGEGAPLVPSL
IDLSDFTPSPNVSSIPLREQVPGRGATTHQQQPQGQESGKAANFEDLIDF
G*

spliced messenger RNA

>Gchil9062.t1 ID=Gchil9062.t1|Name=Gchil9062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:1264810..1266465+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGTCTCTTCTCAAGGCGGCACAGTCGCTGGAGCGCGGCATGGA
CTCCGCTTTCTCCAATGCCCCGGCCTCGCACACCGCCTTCAAGAACGCCA
CTCTGGACTTTGCACCATTTTCTGTGCGACTTGGCTCCGTCTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTTGCCACGCCGCTTTCGTCCAATGCCCC
CTCCAACGCCAGGTTTGCAGTCAAGCGTATGTCCTGCACTGAACAAGAAT
CCAAACGCCAGGCTCATATTGAAATTGATTTTCTGCGAAAGCTTCCCGCC
CATCGCAACCTTGTCAAGTTCTACGACGCAATCTTTCATCAAGGCCACGC
CTTTTTGCTCTTTGAATTGCTTGATGGAGGCACTTTGCCAGAAATCCTGT
CGCGTTCCAATCTAACTTCCCAGAAAAAACTTACCATTCTCGTAGATGTC
ACATCTGCCGTTGTTCACCTGCATTCTCAGCAACCTCCTATATTCATCCG
AGACGTCAAGCTGGAGAACGTGTTATACGATCGACTACAACGCTGTTACA
AGCTGTGTGATTTCGGAAGCGCTACTCAGCACACGTGCTGCCCTGTATCG
CGTGCTGATATTCTGGCACTCGAAGAAGAAATCGCAAACAACTGCACCTC
CATGTATCGCGCGCCAGAGTTGGTTGATCTGTATTCGAAGCCCTTCATCT
GCGAACGCGCTGATGTGTGGTCCTTGGGTTGCATTTGGTATGCGCTTTTG
TTTGGTTCACTTCCCTTCGATGGCTCTTCGTCGCTGCAGATCACCACCGG
TTTGGCCAGCATTCCTACCCAACCAACGTATCCACACCAATTTATTTCTC
TGTTGGAAAAAATGCTCGTCGTCGATCCGGCACATCGATATGATTCATTC
CAAGTTCTAGAACACCTTCACCGTATCCTTGGTCGACAAACCGATCCTCA
AGTGATCAGCGTTGGAAATGAGCTTCGAAGGCGCAGGTTCGACGACTTTG
GGATCGATGCCACCTCGCGTGCCGCAGTTGAATCTGGAAGCGCTGTATCA
CATTCCAAGGAGCTCGAGGAGTCAGATTCATGTGGACCTGTACAACCAGT
ATCTCAATCACTCATTGGCGACTTGGACGAACTGTTATCTGTTTCAGAAC
GCCCGACGTCGGATACTAAATCTGTGAATGACAAAGGTATCAATAGCGGA
TGGGCAGATTTTGGTGCCGCTTTTACCAAGCCGGCTACGGATAGGGTGTC
GAAAATGGCTTCAACTGCGTCGTCAAATTTCTTCCTTCCAGAGCTTGCCA
TGTCTACATCGAGCCAAAAGCCGAAAGGGACCTGTACACGAGCAACAGCA
GGTCCTCCGCAGAGCGTCGACATTAGACCCGGAGGAGCCTACGAGAGAAA
CTTGTCGCGGCGTTCACCCGGATACGAGCCGTCGTCTACAAGTACGGTTC
CAGTGCTTACTAGGAATCAGGGAGAAGGAGCACCCTTGGTACCATCATTG
ATCGACCTTTCAGACTTTACGCCGTCCCCGAACGTATCCTCCATTCCACT
GAGAGAGCAAGTGCCTGGTCGCGGTGCTACAACGCATCAGCAGCAGCCGC
AAGGGCAAGAAAGTGGCAAAGCGGCAAACTTTGAGGACTTGATTGACTTT
GGGTGA

protein sequence of Gchil9062.t1

>Gchil9062.t1 ID=Gchil9062.t1|Name=Gchil9062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=552bp
MFKSLLKAAQSLERGMDSAFSNAPASHTAFKNATLDFAPFSVRLGSVFAE
GGYSFIHVATPLSSNAPSNARFAVKRMSCTEQESKRQAHIEIDFLRKLPA
HRNLVKFYDAIFHQGHAFLLFELLDGGTLPEILSRSNLTSQKKLTILVDV
TSAVVHLHSQQPPIFIRDVKLENVLYDRLQRCYKLCDFGSATQHTCCPVS
RADILALEEEIANNCTSMYRAPELVDLYSKPFICERADVWSLGCIWYALL
FGSLPFDGSSSLQITTGLASIPTQPTYPHQFISLLEKMLVVDPAHRYDSF
QVLEHLHRILGRQTDPQVISVGNELRRRRFDDFGIDATSRAAVESGSAVS
HSKELEESDSCGPVQPVSQSLIGDLDELLSVSERPTSDTKSVNDKGINSG
WADFGAAFTKPATDRVSKMASTASSNFFLPELAMSTSSQKPKGTCTRATA
GPPQSVDIRPGGAYERNLSRRSPGYEPSSTSTVPVLTRNQGEGAPLVPSL
IDLSDFTPSPNVSSIPLREQVPGRGATTHQQQPQGQESGKAANFEDLIDF
G*

mRNA from alignment at tig00004370_pilon:1264810..1266465+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9062.t1 ID=Gchil9062.t1|Name=Gchil9062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:1264810..1266465+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCAAGTCTCTTCTCAAGGCGGCACAGTCGCTGGAGCGCGGCATGGA
CTCCGCTTTCTCCAATGCCCCGGCCTCGCACACCGCCTTCAAGAACGCCA
CTCTGGACTTTGCACCATTTTCTGTGCGACTTGGCTCCGTCTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTTGCCACGCCGCTTTCGTCCAATGCCCC
CTCCAACGCCAGGTTTGCAGTCAAGCGTATGTCCTGCACTGAACAAGAAT
CCAAACGCCAGGCTCATATTGAAATTGATTTTCTGCGAAAGCTTCCCGCC
CATCGCAACCTTGTCAAGTTCTACGACGCAATCTTTCATCAAGGCCACGC
CTTTTTGCTCTTTGAATTGCTTGATGGAGGCACTTTGCCAGAAATCCTGT
CGCGTTCCAATCTAACTTCCCAGAAAAAACTTACCATTCTCGTAGATGTC
ACATCTGCCGTTGTTCACCTGCATTCTCAGCAACCTCCTATATTCATCCG
AGACGTCAAGCTGGAGAACGTGTTATACGATCGACTACAACGCTGTTACA
AGCTGTGTGATTTCGGAAGCGCTACTCAGCACACGTGCTGCCCTGTATCG
CGTGCTGATATTCTGGCACTCGAAGAAGAAATCGCAAACAACTGCACCTC
CATGTATCGCGCGCCAGAGTTGGTTGATCTGTATTCGAAGCCCTTCATCT
GCGAACGCGCTGATGTGTGGTCCTTGGGTTGCATTTGGTATGCGCTTTTG
TTTGGTTCACTTCCCTTCGATGGCTCTTCGTCGCTGCAGATCACCACCGG
TTTGGCCAGCATTCCTACCCAACCAACGTATCCACACCAATTTATTTCTC
TGTTGGAAAAAATGCTCGTCGTCGATCCGGCACATCGATATGATTCATTC
CAAGTTCTAGAACACCTTCACCGTATCCTTGGTCGACAAACCGATCCTCA
AGTGATCAGCGTTGGAAATGAGCTTCGAAGGCGCAGGTTCGACGACTTTG
GGATCGATGCCACCTCGCGTGCCGCAGTTGAATCTGGAAGCGCTGTATCA
CATTCCAAGGAGCTCGAGGAGTCAGATTCATGTGGACCTGTACAACCAGT
ATCTCAATCACTCATTGGCGACTTGGACGAACTGTTATCTGTTTCAGAAC
GCCCGACGTCGGATACTAAATCTGTGAATGACAAAGGTATCAATAGCGGA
TGGGCAGATTTTGGTGCCGCTTTTACCAAGCCGGCTACGGATAGGGTGTC
GAAAATGGCTTCAACTGCGTCGTCAAATTTCTTCCTTCCAGAGCTTGCCA
TGTCTACATCGAGCCAAAAGCCGAAAGGGACCTGTACACGAGCAACAGCA
GGTCCTCCGCAGAGCGTCGACATTAGACCCGGAGGAGCCTACGAGAGAAA
CTTGTCGCGGCGTTCACCCGGATACGAGCCGTCGTCTACAAGTACGGTTC
CAGTGCTTACTAGGAATCAGGGAGAAGGAGCACCCTTGGTACCATCATTG
ATCGACCTTTCAGACTTTACGCCGTCCCCGAACGTATCCTCCATTCCACT
GAGAGAGCAAGTGCCTGGTCGCGGTGCTACAACGCATCAGCAGCAGCCGC
AAGGGCAAGAAAGTGGCAAAGCGGCAAACTTTGAGGACTTGATTGACTTT
GGGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:1264810..1266465+

>Gchil9062.t1 ID=Gchil9062.t1|Name=Gchil9062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00004370_pilon:1264810..1266465+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCAAGTCTCTTCTCAAGGCGGCACAGTCGCTGGAGCGCGGCATGGA
CTCCGCTTTCTCCAATGCCCCGGCCTCGCACACCGCCTTCAAGAACGCCA
CTCTGGACTTTGCACCATTTTCTGTGCGACTTGGCTCCGTCTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTTGCCACGCCGCTTTCGTCCAATGCCCC
CTCCAACGCCAGGTTTGCAGTCAAGCGTATGTCCTGCACTGAACAAGAAT
CCAAACGCCAGGCTCATATTGAAATTGATTTTCTGCGAAAGCTTCCCGCC
CATCGCAACCTTGTCAAGTTCTACGACGCAATCTTTCATCAAGGCCACGC
CTTTTTGCTCTTTGAATTGCTTGATGGAGGCACTTTGCCAGAAATCCTGT
CGCGTTCCAATCTAACTTCCCAGAAAAAACTTACCATTCTCGTAGATGTC
ACATCTGCCGTTGTTCACCTGCATTCTCAGCAACCTCCTATATTCATCCG
AGACGTCAAGCTGGAGAACGTGTTATACGATCGACTACAACGCTGTTACA
AGCTGTGTGATTTCGGAAGCGCTACTCAGCACACGTGCTGCCCTGTATCG
CGTGCTGATATTCTGGCACTCGAAGAAGAAATCGCAAACAACTGCACCTC
CATGTATCGCGCGCCAGAGTTGGTTGATCTGTATTCGAAGCCCTTCATCT
GCGAACGCGCTGATGTGTGGTCCTTGGGTTGCATTTGGTATGCGCTTTTG
TTTGGTTCACTTCCCTTCGATGGCTCTTCGTCGCTGCAGATCACCACCGG
TTTGGCCAGCATTCCTACCCAACCAACGTATCCACACCAATTTATTTCTC
TGTTGGAAAAAATGCTCGTCGTCGATCCGGCACATCGATATGATTCATTC
CAAGTTCTAGAACACCTTCACCGTATCCTTGGTCGACAAACCGATCCTCA
AGTGATCAGCGTTGGAAATGAGCTTCGAAGGCGCAGGTTCGACGACTTTG
GGATCGATGCCACCTCGCGTGCCGCAGTTGAATCTGGAAGCGCTGTATCA
CATTCCAAGGAGCTCGAGGAGTCAGATTCATGTGGACCTGTACAACCAGT
ATCTCAATCACTCATTGGCGACTTGGACGAACTGTTATCTGTTTCAGAAC
GCCCGACGTCGGATACTAAATCTGTGAATGACAAAGGTATCAATAGCGGA
TGGGCAGATTTTGGTGCCGCTTTTACCAAGCCGGCTACGGATAGGGTGTC
GAAAATGGCTTCAACTGCGTCGTCAAATTTCTTCCTTCCAGAGCTTGCCA
TGTCTACATCGAGCCAAAAGCCGAAAGGGACCTGTACACGAGCAACAGCA
GGTCCTCCGCAGAGCGTCGACATTAGACCCGGAGGAGCCTACGAGAGAAA
CTTGTCGCGGCGTTCACCCGGATACGAGCCGTCGTCTACAAGTACGGTTC
CAGTGCTTACTAGGAATCAGGGAGAAGGAGCACCCTTGGTACCATCATTG
ATCGACCTTTCAGACTTTACGCCGTCCCCGAACGTATCCTCCATTCCACT
GAGAGAGCAAGTGCCTGGTCGCGGTGCTACAACGCATCAGCAGCAGCCGC
AAGGGCAAGAAAGTGGCAAAGCGGCAAACTTTGAGGACTTGATTGACTTT
GGGTGA