Gchil7609.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7609.t1
Unique NameGchil7609.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2201398..2201742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7609Gchil7609Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2201398..2201742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1Gchil7609.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2201398..2201742 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1.start1Gchil7609.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2201398..2201400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1.CDS1Gchil7609.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2201398..2201508 +
Gchil7609.t1.CDS2Gchil7609.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2201602..2201742 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1.exon1Gchil7609.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2201398..2201508 +
Gchil7609.t1.exon2Gchil7609.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2201602..2201742 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1.intron1Gchil7609.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 2201509..2201601 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7609.t1.stop1Gchil7609.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2201740..2201742 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7609.t1 ID=Gchil7609.t1|Name=Gchil7609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=84bp
MDRFHDEHLLPVPEPEQAPRWEVRTCRSRSGAFSHYFVDRLTGKTFSSCE
EVLTESRSVASSPASSPASSPATSPVPPPSKKF*
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spliced messenger RNA

>Gchil7609.t1 ID=Gchil7609.t1|Name=Gchil7609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp|location=Sequence derived from alignment at tig00000007_pilon:2201398..2201742+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGCTTCCACGACGAACATCTTCTTCCAGTCCCCGAGCCTGAGCA
AGCGCCACGCTGGGAAGTAAGAACGTGCCGCTCCCGTTCTGGTGCATTCT
CTCACTACTTCGTTGACCGACTAACTGGAAAAACCTTCTCCTCCTGTGAA
GAAGTCCTCACCGAATCTCGCTCGGTGGCTTCGTCGCCTGCTTCATCGCC
TGCTTCCTCGCCCGCAACTTCCCCAGTTCCACCCCCTTCCAAGAAGTTCT
AG
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protein sequence of Gchil7609.t1

>Gchil7609.t1 ID=Gchil7609.t1|Name=Gchil7609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=84bp
MDRFHDEHLLPVPEPEQAPRWEVRTCRSRSGAFSHYFVDRLTGKTFSSCE
EVLTESRSVASSPASSPASSPATSPVPPPSKKF*
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mRNA from alignment at tig00000007_pilon:2201398..2201742+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7609.t1 ID=Gchil7609.t1|Name=Gchil7609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000007_pilon:2201398..2201742+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCTTCCACGACGAACATCTTCTTCCAGTCCCCGAGCCTGAGCA
AGCGCCACGCTGGGAAGTAAGAACGTGCCGCTCCCGTTCTGGTGCATTCT
CTCACTACTTCGTAAGTTTGATAATACATCTTTCCATAGCACTATCCTTT
GATTTCATACATATTGTTTTATACTCACATCGTCTGCGCTCCTCTCATAC
ACAGGTTGACCGACTAACTGGAAAAACCTTCTCCTCCTGTGAAGAAGTCC
TCACCGAATCTCGCTCGGTGGCTTCGTCGCCTGCTTCATCGCCTGCTTCC
TCGCCCGCAACTTCCCCAGTTCCACCCCCTTCCAAGAAGTTCTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2201398..2201742+

>Gchil7609.t1 ID=Gchil7609.t1|Name=Gchil7609.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=252bp|location=Sequence derived from alignment at tig00000007_pilon:2201398..2201742+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCTTCCACGACGAACATCTTCTTCCAGTCCCCGAGCCTGAGCA
AGCGCCACGCTGGGAAGTAAGAACGTGCCGCTCCCGTTCTGGTGCATTCT
CTCACTACTTCGTTGACCGACTAACTGGAAAAACCTTCTCCTCCTGTGAA
GAAGTCCTCACCGAATCTCGCTCGGTGGCTTCGTCGCCTGCTTCATCGCC
TGCTTCCTCGCCCGCAACTTCCCCAGTTCCACCCCCTTCCAAGAAGTTCT
AG
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