Gchil7484.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7484.t1
Unique NameGchil7484.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length115
Homology
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A2V3J281_9FLOR (DNA-directed RNA polymerases II, IV and V subunit 9A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J281_9FLOR)

HSP 1 Score: 210 bits (535), Expect = 9.220e-69
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVNCGTRWLSSEE 114
            MLYPQEDV ERR TGRKVL YVCRNC + ED  EV YPIHKNVIVHTANEK+AITYDVLEDKTLPRTFNANCP  ECQGKQAVYYQSPVGKNDEALVLIFVCVNCG RWLSS+E
Sbjct:    1 MLYPQEDVKERRSTGRKVLKYVCRNCTYFEDVSEVTYPIHKNVIVHTANEKMAITYDVLEDKTLPRTFNANCP--ECQGKQAVYYQSPVGKNDEALVLIFVCVNCGNRWLSSDE 112          
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A7S2ZP66_9RHOD (DNA-directed RNA polymerase subunit n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZP66_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 5.750e-33
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVNCGTRWLSSEE 114
            MLYP ED A RR T ++ L Y CR+C +KE   +++ P++++VI H A+E    TYDV  D TLPRT+   C  + C  K+AVY+Q PVGKND+ LVL FVCVNC   W SS++
Sbjct:   12 MLYPTEDKALRRSTKQRSLIYSCRSCGNKETVTDLSEPVYRHVIAHQASEVTQETYDVTADPTLPRTYETAC--RNCGHKEAVYFQVPVGKNDDMLVLHFVCVNCRENWFSSDD 123          
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A6G0V615_9BILA (DNA-directed RNA polymerase subunit n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V615_9BILA)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-16
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVN--CGTRW 109
            MLYP+ED   R+      L Y CRNC H E A      I+ N ++H  +E   I  DV+ D TLP+TF+  CP  +CQGK+AV++Q+   + ++ + L +VC N  C  RW
Sbjct:   32 MLYPREDKDHRQ------LMYTCRNCDHTELADSP--CIYVNKLMHEIDELTQIVADVINDPTLPKTFDHVCP--KCQGKEAVFFQAQSRRAEDEMKLYYVCTNKECVHRW 132          
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A7E4UXN3_PANRE (DNA-directed RNA polymerase subunit n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4UXN3_PANRE)

HSP 1 Score: 75.5 bits (184), Expect = 3.730e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVN--CGTRW 109
            MLYP+ED   +R      L Y CRNC H E A      I+ N ++H  +E   I  DV+ D TLP+T++  CP+  C  K+AV++Q+   + +E + L +VC N  C  RW
Sbjct:   30 MLYPREDKEHQR------LMYTCRNCDHSEQAESP--CIYINKLMHEIDELTQIVADVVNDPTLPKTYDHVCPN--CDLKEAVFFQAQSRRAEEEMKLYYVCTNRECNHRW 130          
BLAST of Gchil7484.t1 vs. uniprot
Match: K0THW0_THAOC (TFIIS-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THW0_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 7.870e-14
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKE-DAGEVNYPIHKNVIVHTANEKL-AITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGK-NDEALVLIFVCVNCGTRWLS 111
            MLYP+E+ +ER+      L Y CR C + E  AG++   I+KNV+       L  +  DV +D TLPR+ NA+C   +C   +AVY+QS       E+L LIFVC NCG +W++
Sbjct:   74 MLYPKENPSERK------LVYACRLCRYTEYAAGQL---IYKNVLKKEVGNILHTVPADVSDDPTLPRSQNAHCG--KCGHSEAVYFQSDTSDVRSESLALIFVCCNCGYKWVA 176          
BLAST of Gchil7484.t1 vs. uniprot
Match: B7FQG9_PHATC (DNA-directed RNA polymerase subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQG9_PHATC)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-12
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVNCGTRWLS 111
            MLYPQED         K+L Y CR C + E A +              N    +   + +D TL R+  ANC +  C   +AV++QS V ++D +L LIFVC NCG +W++
Sbjct:   10 MLYPQEDKRN------KILQYACRLCRYVESAPDQPLIYRNERKKEVGNILHTVPSSISDDPTLARSQKANCAN--CGRHEAVFFQSDVAQSD-SLALIFVCCNCGHKWVN 111          
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A0G4GWI1_VITBC (DNA-directed RNA polymerase subunit n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWI1_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 2.380e-10
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCRNCVHKE----DAGEVNYPIHKNVIVHTANEKLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVNCGTRWL 110
            +L P+ED  ERR+     L + C+ C  KE    D+   N  I +  I + + E++ I  +++ED TL RT +  CP  +C+ + AV++Q P    D+A+ L+FVC NCG  W+
Sbjct:   10 LLDPEED-KERRQ-----LVFRCKRCNIKEATDPDSAAEN-TIERRNINYESKEEVFIRREIVEDNTLSRTKDHECP--KCRYRGAVFFQLPEKSTDQAMTLVFVCENCG-HWV 113          
BLAST of Gchil7484.t1 vs. uniprot
Match: A0A7S3HGL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGL0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.080e-7
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 0
Query:    1 MLYPQEDVAERRRTGRKVLNYVCR--NCVHKEDAGEVNYP---IHKNVIVHTANEKL-AITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIFVCVNCGTRWL 110
            +LYP+E+         K L Y C+  +C + E    +N P   +  N I+  ++ +L  I  DV +D TL R+ + NC    C   +AV++Q+       AL L+FVC NCG +W+
Sbjct:   11 LLYPREN------RQLKALEYYCKQNDCPYTE----INLPSTCVFVNEIIKDSSTRLEVILSDVNKDPTLQRSRDINCTG--CGFNEAVFFQAEQTTKSTALNLVFVCCNCGHKWM 114          
The following BLAST results are available for this feature:
BLAST of Gchil7484.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J281_9FLOR9.220e-6987.72DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A7S2ZP66_9RHOD5.750e-3350.88DNA-directed RNA polymerase subunit n=1 Tax=Rhodos... [more]
A0A6G0V615_9BILA1.740e-1640.54DNA-directed RNA polymerase subunit n=1 Tax=Halice... [more]
A0A7E4UXN3_PANRE3.730e-1538.74DNA-directed RNA polymerase subunit n=1 Tax=Panagr... [more]
K0THW0_THAOC7.870e-1441.23TFIIS-type domain-containing protein n=1 Tax=Thala... [more]
B7FQG9_PHATC1.130e-1236.04DNA-directed RNA polymerase subunit n=1 Tax=Phaeod... [more]
A0A0G4GWI1_VITBC2.380e-1035.96DNA-directed RNA polymerase subunit n=2 Tax=Vitrel... [more]
A0A7S3HGL0_9STRA1.080e-732.76Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 70..111
e-value: 0.0028
score: 20.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 71..109
e-value: 1.0E-7
score: 31.7
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 68..110
score: 9.374244
NoneNo IPR availableGENE3D2.20.25.10coord: 1..42
e-value: 7.7E-7
score: 30.6
NoneNo IPR availableGENE3D2.20.25.10coord: 44..114
e-value: 1.4E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 1..109
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..111
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..109
IPR034012Pol II subunit B9, C-terminal zinc ribbonCDDcd10508Zn-ribbon_RPB9coord: 61..109
e-value: 9.12302E-17
score: 66.5078

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1435610..1436069 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7484.t1Gchil7484.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1435610..1436069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7484.t1 ID=Gchil7484.t1|Name=Gchil7484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=115bp
MLYPQEDVAERRRTGRKVLNYVCRNCVHKEDAGEVNYPIHKNVIVHTANE
KLAITYDVLEDKTLPRTFNANCPDQECQGKQAVYYQSPVGKNDEALVLIF
VCVNCGTRWLSSEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR034012Zn_ribbon_RPB9_C