Gchil9010.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9010.t1
Unique NameGchil9010.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:951535..952887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1297742.A176_05102
PFAMsCupin_4
Max annot lvl2|Bacteria
Evalue0.000132
EggNOG OGsCOG2850@1|root,COG2850@2|Bacteria
Descriptionpeptidyl-arginine hydroxylation
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9010Gchil9010Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 951535..952887 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9010.t1.start1Gchil9010.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 951535..951537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9010.t1.CDS1Gchil9010.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 951535..952887 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9010.t1.exon1Gchil9010.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 951535..952887 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9010.t1.stop1Gchil9010.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 952885..952887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9010.t1Gchil9010.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 951535..952887 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9010.t1 ID=Gchil9010.t1|Name=Gchil9010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=451bp
MQMLLNDEDTFETFFSHNFERYALHVDDSYRSNRVAWMRMHRRFILNHDI
DNLLNTSSQVSSLSIPTDLELTRYNSSTFVLETFPPGNAPHLTTLQNAFR
DGFELVLHRMQMRSAAIARFADSMSAFWHVSVEASLHFCPPSPPTKHVRD
PRAATLRSGDLFIVVLDGEMVASVHEAAHEFPLSSETGLNSHSILASLQN
PSPRTISLDEGDVLYVPRGSAFHIEGRNSPALYLAFHVRTDEVSATMVLR
SMLAAAQKRSEGPLDRFAAPQLEWSEIVDRSMSVAHDLIPPMRRFFPLSG
AIIDAFEDAGKPVGQEVAVSVLHKFVVSAVNAFFDPFIEVIKDGDVAVDE
SLLKWAKSISRQNQQSASYRQAREMFKLCLDWFGRQTDAPSDGISQLTLD
WFTAFENRRESELEERHKAFRALGIEEDALLDGDFICSEDEDFCALASNS
*
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spliced messenger RNA

>Gchil9010.t1 ID=Gchil9010.t1|Name=Gchil9010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00004370_pilon:951535..952887+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATGCTCCTTAATGATGAAGACACTTTCGAGACTTTCTTTTCCCA
CAACTTTGAGCGTTATGCACTGCACGTCGACGACTCGTATCGCTCCAACC
GAGTCGCGTGGATGCGCATGCACCGTCGCTTCATCCTGAACCATGACATT
GACAATCTTCTCAATACCTCCTCACAAGTCTCCTCACTTTCCATTCCCAC
TGATCTGGAATTAACTCGATACAACTCCTCAACTTTTGTCCTCGAAACTT
TTCCACCAGGAAACGCTCCGCACTTGACAACTTTACAGAACGCCTTTCGA
GATGGCTTCGAACTTGTCCTGCATCGCATGCAGATGCGCTCCGCAGCAAT
CGCGCGCTTTGCCGATTCTATGTCGGCATTTTGGCATGTCTCCGTTGAAG
CTTCACTACACTTCTGTCCTCCAAGCCCACCGACAAAACATGTGCGTGAT
CCTCGCGCTGCTACTTTGAGAAGCGGTGACCTTTTTATTGTAGTCTTGGA
TGGTGAAATGGTAGCCAGCGTTCATGAAGCAGCGCATGAGTTTCCATTGT
CTTCTGAAACTGGTCTCAATTCTCATAGCATACTTGCATCTCTTCAAAAC
CCTTCGCCAAGAACCATCTCACTCGATGAGGGGGATGTGTTGTACGTACC
ACGAGGTTCTGCATTCCACATAGAGGGACGAAATTCTCCTGCCCTCTATT
TAGCTTTCCATGTACGCACCGACGAAGTATCGGCTACAATGGTATTACGA
TCTATGCTGGCCGCTGCTCAAAAAAGATCAGAGGGGCCATTAGATCGCTT
TGCAGCACCTCAGCTAGAGTGGTCCGAAATAGTAGATCGTTCTATGAGCG
TGGCACACGACCTTATTCCGCCTATGCGCCGATTTTTTCCTCTTTCAGGT
GCAATAATTGATGCGTTTGAAGATGCTGGCAAACCCGTTGGACAAGAAGT
AGCTGTCAGTGTTCTGCATAAGTTCGTCGTTTCCGCTGTCAACGCGTTTT
TCGATCCATTTATCGAGGTTATAAAGGACGGCGACGTCGCTGTTGATGAA
TCTTTGCTGAAGTGGGCAAAGTCAATATCCAGGCAAAATCAACAATCAGC
ATCATACCGTCAAGCAAGGGAGATGTTTAAACTTTGTTTAGACTGGTTTG
GAAGACAAACTGATGCTCCTAGTGACGGAATTTCGCAATTAACTTTAGAT
TGGTTCACAGCCTTTGAAAACAGAAGAGAGTCAGAGCTAGAGGAGCGGCA
CAAAGCATTTCGGGCTCTAGGAATTGAAGAAGACGCACTATTGGATGGTG
ACTTTATTTGTTCAGAAGACGAGGACTTTTGCGCTCTGGCTTCGAACTCG
TAA
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protein sequence of Gchil9010.t1

>Gchil9010.t1 ID=Gchil9010.t1|Name=Gchil9010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=451bp
MQMLLNDEDTFETFFSHNFERYALHVDDSYRSNRVAWMRMHRRFILNHDI
DNLLNTSSQVSSLSIPTDLELTRYNSSTFVLETFPPGNAPHLTTLQNAFR
DGFELVLHRMQMRSAAIARFADSMSAFWHVSVEASLHFCPPSPPTKHVRD
PRAATLRSGDLFIVVLDGEMVASVHEAAHEFPLSSETGLNSHSILASLQN
PSPRTISLDEGDVLYVPRGSAFHIEGRNSPALYLAFHVRTDEVSATMVLR
SMLAAAQKRSEGPLDRFAAPQLEWSEIVDRSMSVAHDLIPPMRRFFPLSG
AIIDAFEDAGKPVGQEVAVSVLHKFVVSAVNAFFDPFIEVIKDGDVAVDE
SLLKWAKSISRQNQQSASYRQAREMFKLCLDWFGRQTDAPSDGISQLTLD
WFTAFENRRESELEERHKAFRALGIEEDALLDGDFICSEDEDFCALASNS
*
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mRNA from alignment at tig00004370_pilon:951535..952887+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9010.t1 ID=Gchil9010.t1|Name=Gchil9010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00004370_pilon:951535..952887+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAATGCTCCTTAATGATGAAGACACTTTCGAGACTTTCTTTTCCCA
CAACTTTGAGCGTTATGCACTGCACGTCGACGACTCGTATCGCTCCAACC
GAGTCGCGTGGATGCGCATGCACCGTCGCTTCATCCTGAACCATGACATT
GACAATCTTCTCAATACCTCCTCACAAGTCTCCTCACTTTCCATTCCCAC
TGATCTGGAATTAACTCGATACAACTCCTCAACTTTTGTCCTCGAAACTT
TTCCACCAGGAAACGCTCCGCACTTGACAACTTTACAGAACGCCTTTCGA
GATGGCTTCGAACTTGTCCTGCATCGCATGCAGATGCGCTCCGCAGCAAT
CGCGCGCTTTGCCGATTCTATGTCGGCATTTTGGCATGTCTCCGTTGAAG
CTTCACTACACTTCTGTCCTCCAAGCCCACCGACAAAACATGTGCGTGAT
CCTCGCGCTGCTACTTTGAGAAGCGGTGACCTTTTTATTGTAGTCTTGGA
TGGTGAAATGGTAGCCAGCGTTCATGAAGCAGCGCATGAGTTTCCATTGT
CTTCTGAAACTGGTCTCAATTCTCATAGCATACTTGCATCTCTTCAAAAC
CCTTCGCCAAGAACCATCTCACTCGATGAGGGGGATGTGTTGTACGTACC
ACGAGGTTCTGCATTCCACATAGAGGGACGAAATTCTCCTGCCCTCTATT
TAGCTTTCCATGTACGCACCGACGAAGTATCGGCTACAATGGTATTACGA
TCTATGCTGGCCGCTGCTCAAAAAAGATCAGAGGGGCCATTAGATCGCTT
TGCAGCACCTCAGCTAGAGTGGTCCGAAATAGTAGATCGTTCTATGAGCG
TGGCACACGACCTTATTCCGCCTATGCGCCGATTTTTTCCTCTTTCAGGT
GCAATAATTGATGCGTTTGAAGATGCTGGCAAACCCGTTGGACAAGAAGT
AGCTGTCAGTGTTCTGCATAAGTTCGTCGTTTCCGCTGTCAACGCGTTTT
TCGATCCATTTATCGAGGTTATAAAGGACGGCGACGTCGCTGTTGATGAA
TCTTTGCTGAAGTGGGCAAAGTCAATATCCAGGCAAAATCAACAATCAGC
ATCATACCGTCAAGCAAGGGAGATGTTTAAACTTTGTTTAGACTGGTTTG
GAAGACAAACTGATGCTCCTAGTGACGGAATTTCGCAATTAACTTTAGAT
TGGTTCACAGCCTTTGAAAACAGAAGAGAGTCAGAGCTAGAGGAGCGGCA
CAAAGCATTTCGGGCTCTAGGAATTGAAGAAGACGCACTATTGGATGGTG
ACTTTATTTGTTCAGAAGACGAGGACTTTTGCGCTCTGGCTTCGAACTCG
TAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:951535..952887+

>Gchil9010.t1 ID=Gchil9010.t1|Name=Gchil9010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00004370_pilon:951535..952887+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAATGCTCCTTAATGATGAAGACACTTTCGAGACTTTCTTTTCCCA
CAACTTTGAGCGTTATGCACTGCACGTCGACGACTCGTATCGCTCCAACC
GAGTCGCGTGGATGCGCATGCACCGTCGCTTCATCCTGAACCATGACATT
GACAATCTTCTCAATACCTCCTCACAAGTCTCCTCACTTTCCATTCCCAC
TGATCTGGAATTAACTCGATACAACTCCTCAACTTTTGTCCTCGAAACTT
TTCCACCAGGAAACGCTCCGCACTTGACAACTTTACAGAACGCCTTTCGA
GATGGCTTCGAACTTGTCCTGCATCGCATGCAGATGCGCTCCGCAGCAAT
CGCGCGCTTTGCCGATTCTATGTCGGCATTTTGGCATGTCTCCGTTGAAG
CTTCACTACACTTCTGTCCTCCAAGCCCACCGACAAAACATGTGCGTGAT
CCTCGCGCTGCTACTTTGAGAAGCGGTGACCTTTTTATTGTAGTCTTGGA
TGGTGAAATGGTAGCCAGCGTTCATGAAGCAGCGCATGAGTTTCCATTGT
CTTCTGAAACTGGTCTCAATTCTCATAGCATACTTGCATCTCTTCAAAAC
CCTTCGCCAAGAACCATCTCACTCGATGAGGGGGATGTGTTGTACGTACC
ACGAGGTTCTGCATTCCACATAGAGGGACGAAATTCTCCTGCCCTCTATT
TAGCTTTCCATGTACGCACCGACGAAGTATCGGCTACAATGGTATTACGA
TCTATGCTGGCCGCTGCTCAAAAAAGATCAGAGGGGCCATTAGATCGCTT
TGCAGCACCTCAGCTAGAGTGGTCCGAAATAGTAGATCGTTCTATGAGCG
TGGCACACGACCTTATTCCGCCTATGCGCCGATTTTTTCCTCTTTCAGGT
GCAATAATTGATGCGTTTGAAGATGCTGGCAAACCCGTTGGACAAGAAGT
AGCTGTCAGTGTTCTGCATAAGTTCGTCGTTTCCGCTGTCAACGCGTTTT
TCGATCCATTTATCGAGGTTATAAAGGACGGCGACGTCGCTGTTGATGAA
TCTTTGCTGAAGTGGGCAAAGTCAATATCCAGGCAAAATCAACAATCAGC
ATCATACCGTCAAGCAAGGGAGATGTTTAAACTTTGTTTAGACTGGTTTG
GAAGACAAACTGATGCTCCTAGTGACGGAATTTCGCAATTAACTTTAGAT
TGGTTCACAGCCTTTGAAAACAGAAGAGAGTCAGAGCTAGAGGAGCGGCA
CAAAGCATTTCGGGCTCTAGGAATTGAAGAAGACGCACTATTGGATGGTG
ACTTTATTTGTTCAGAAGACGAGGACTTTTGCGCTCTGGCTTCGAACTCG
TAA
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