Gchil9202.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9202.t1
Unique NameGchil9202.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length627
Homology
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A2V3J153_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J153_9FLOR)

HSP 1 Score: 293 bits (749), Expect = 4.840e-87
Identity = 228/617 (36.95%), Postives = 303/617 (49.11%), Query Frame = 0
Query:   11 LLLLLSLLPPPVLSRESPETLQPGLPLRISVPGDELFTVDLESYLRAPANLSVDFAFDP----PVVEKGHHL--------PRPIALLHNTSASPSSDNLTALLPPSFSQLPHNSDLFLSPAYIRSYNARLLHTGFVSTVRHNNQSVTVYNVAA-FNNPSTFP--DAYLTLTWLQEQP-------ACAGYFDSAQPASRPSPCNSRGTCDQSSHCACQLSFTAPLCTESLSVFSKGASNTPYNESDFEVKPSFLHDRYVAVVQPLRTVYVAFNYSQLSINQSYTYYFLVHILKGAALPHINDSLQCELASSPQDNSNTMPVWQSDSHAFKQLDAAPGGPFFEANISFKPSGSRYIVALFANATHASTTASSDDYAAFAISAPRRIHHPIAKPSPISTQRFLPEAMLPVCLSLIFVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRMYPAYLADDDEGECPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASVRVEHLSDNRHESVCSRPRSCWSLVFCLSRDGEAGDGPDGAQSDLQDEQQRSLEPQREQIHTGGRIVFPDRVNWPLPVRTASSTPRTRSTAHT-SEAGSESTSMHTALDLSFSS 604
            LLL LS  PP V +   P +     PL  S P  +   V +   LRA  ++     F+     P+    H+L        P P+ LLHN      +  L   L P  +   HNS         + YN+ L H+   +        +T+ N A  + +  T P  +A LTL  +  +         C         A +P P   R  CD    CA   S   P C+E L   +KG SN        +++   L   YV  V+P RT YV+ +    ++  +  Y   + +LKGA   H N S+       P +N + +P +         L  A    F  A+I F      +I+AL ANA+  +TT   D    FA+  P    +  A       +RFLP+A+LPVCLSLI +AALAVL+VFWLDRR+G  K+VDRLSE EL RMYP Y+ D  +G+CPICL DMQ G+ LRALRCEH FHA+CLDPW+C  RA+CPTCRA VRVEHLSDN +  +C   R+C   +F   RD    D     +         +++          R+  PDR + P   RTASSTPRTRSTAH  S+  SE  SMHTALD+SF S
Sbjct:   21 LLLPLSPSPPAVAAHSCPHS---PPPLPTSFP--KFHNVSVSVQLRAACSVRFALPFEVSARNPLFISLHYLQPTVQTRRPHPLILLHNDEPLNVTPPLPEFLSPDSTLPEHNSR--------QHYNSWLTHSVLYADKAVPKPHLTIINAATPYPSDPTLPFLNARLTLVSMNNESDMTCKHVGCPSPARCTSHAPKPPPRLLR--CD----CAPSHSI-GPQCSEPLLSANKGESNNASALEQLDLRLPNLRQSYVVFVKPFRTAYVSIH----NVRPNRNYQIRISVLKGATTHH-NPSVAVASVYQPDNNRSVIPDFNPSRRV--NLRRASNSRFATADIPFFVKQLPFIIALTANASLTNTTQLDD--VVFALRLPPHCTNCAAS---AGMKRFLPQALLPVCLSLIAIAALAVLVVFWLDRRAGITKLVDRLSETELSRMYPLYVPDAFQGQCPICLCDMQVGEQLRALRCEHTFHAECLDPWLCENRASCPTCRADVRVEHLSDNHNNPMCPSARACLGAMFRTPRDD--ADNEQSPEXXXXXXXXXAVQANGALHGQPSRVALPDRRHPPPTARTASSTPRTRSTAHAASDVASEDLSMHTALDISFGS 603          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A6P4Y1E6_BRABE (E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y1E6_BRABE)

HSP 1 Score: 72.4 bits (176), Expect = 7.570e-10
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  397 LSLIFVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRMYPAYLADDDEGE-CPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            L LIF+ A      F  DRR  RR    RLS+  L ++        DE + C ICL D + GD LR L C H +H +C+DPW+ G++ TCP C+  V
Sbjct:  192 LMLIFMVA-----KFVRDRRRQRRS---RLSKEHLKKIPTKKFKKGDEYDVCAICLDDYEEGDKLRILPCSHAYHTKCIDPWLTGSKRTCPVCKRRV 280          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A4W5NC86_9TELE (RING-type domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5NC86_9TELE)

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-9
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  399 LIFVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRM-YPAYLADDDEGECPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            +I +  + +L+V  +  R   RK   RL++ +L R+    +   D+   C ICL + + GD LR L C H +H++C+DPW+ GT+ TCP C+  V
Sbjct:  186 MIILVMVVILIVRCVQYRKRMRKY--RLTKEQLKRIPIHKFTKGDEYDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTGTKKTCPVCKQRV 278          
BLAST of Gchil9202.t1 vs. uniprot
Match: C0H9F3_SALSA (RING-type E3 ubiquitin transferase n=23 Tax=Salmonidae TaxID=8015 RepID=C0H9F3_SALSA)

HSP 1 Score: 71.2 bits (173), Expect = 1.770e-9
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  399 LIFVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRM-YPAYLADDDEGECPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            +I +  + +L+V  +  R   RK   RL++ +L R+    +   D+   C ICL + + GD LR L C H +H++C+DPW+ GT+ TCP C+  V
Sbjct:  194 MIILVMVVILIVRCVQYRKRMRKY--RLTKEQLKRIPIHKFTKGDEYDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTGTKKTCPVCKQRV 286          
BLAST of Gchil9202.t1 vs. uniprot
Match: I3ET01_NEMP1 (RING-type domain-containing protein n=3 Tax=Nematocida TaxID=586132 RepID=I3ET01_NEMP1)

HSP 1 Score: 68.9 bits (167), Expect = 3.620e-9
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 0
Query:  379 PSPISTQRFLPEAMLPVCLSLIFVAALAVLLVFWLDRRSGRRKMVDRLS-EAELLRMYPAYLADDDEGECPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCR 489
            P+  ST++  P A      S+IF       + ++L+  S +RK V +   EAE+    P   A+  EGECPICL ++++ +T+R L C H FH++C+  W+      CP CR
Sbjct:  169 PNESSTEQNSPHAR-----SIIFT------ITYYLEENSPQRKTVGKEDLEAEI----PEVKAEGGEGECPICLQNIEKEETIRKLICHHTFHSECVSEWLTSYSNECPMCR 265          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A060X2R2_ONCMY (RING-type E3 ubiquitin transferase n=5 Tax=Salmonidae TaxID=8015 RepID=A0A060X2R2_ONCMY)

HSP 1 Score: 70.1 bits (170), Expect = 4.170e-9
Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  399 LIFVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRM-YPAYLADDDEGECPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            +I +  + +L+V  +  R   RK   RL++ +L ++    +   D+   C ICL + + GD LR L C H +H++C+DPW+ GT+ TCP C+  V
Sbjct:  194 MIILVMVVILIVRCVQYRKRMRKY--RLTKEQLKKIPIHKFTKGDEYDVCAICLDEYEEGDRLRVLPCSHAYHSKCVDPWLTGTKKTCPVCKQRV 286          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A7I8LA20_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LA20_SPIIN)

HSP 1 Score: 64.7 bits (156), Expect = 8.770e-9
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0
Query:  447 CPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            C  CL  ++ GD +R LRCEH FH  CLD W+C  R TCP CR S+
Sbjct:   93 CAFCLAAVEEGDEVRELRCEHLFHRDCLDRWLCHRRRTCPLCRGSL 138          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A811Q5Q9_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811Q5Q9_9POAL)

HSP 1 Score: 66.6 bits (161), Expect = 9.510e-9
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
Query:  438 YLADDDEGECPICLGDMQRGDTLRAL-RCEHHFHAQCLDPWVCGTRATCPTCRASV 492
            YL D    +C +CLG++++G+T+R L  C+H FH +C+DPW+    ATCP CR+SV
Sbjct:  143 YLGDGAAEDCAVCLGEVEKGETVRQLPACQHVFHRECIDPWL-RAHATCPVCRSSV 197          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A5J5EH86_9PEZI (RING-type domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EH86_9PEZI)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-8
Identity = 36/111 (32.43%), Postives = 51/111 (45.95%), Query Frame = 0
Query:  447 CPICLGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASVRVEHLSDNRHESVCSRPRSCWSLVFCLSRDGEAGDGPDGAQSDLQDEQQRSLEPQREQIHTGGRI 557
            CP+C+ D  +G+ LR L C HHFH  C+DPW+     +CP CR  +  E  +D                      +GEAG G + A S   D  +     Q++Q H G R+
Sbjct:  188 CPVCMEDFTQGEELRMLPCHHHFHPDCIDPWLLNVSGSCPLCRIDLHPEQEADG---------------------EGEAGAG-ENAGSANDDANEPLPAQQQQQHHDGSRL 276          
BLAST of Gchil9202.t1 vs. uniprot
Match: A0A6G1F6E6_9ORYZ (RING-type E3 ubiquitin transferase n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1F6E6_9ORYZ)

HSP 1 Score: 64.7 bits (156), Expect = 1.290e-8
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 0
Query:  400 IFVAALAVLLVFWLDRRSGRRKMVDRLSEA----------ELLRMYPAY-LADDDEGECPICLGDMQRGDTLRAL-RCEHHFHAQCLDPWVCGTRATCPTCRASVRV 494
            + +  L V++VFW+ RR    +   R+ E+          + + + P +     D GEC +CL   Q GD  R L RCEH FHA+C+D W+  +R  CP CRA V V
Sbjct:   17 VLMLVLHVVVVFWVLRRGVFLRGAFRVEESGDQQGAGLTPDEIAVLPCHERKGSDGGECTVCLEAFQAGDRCRVLPRCEHGFHARCIDSWLRQSRL-CPICRAEVEV 122          
The following BLAST results are available for this feature:
BLAST of Gchil9202.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J153_9FLOR4.840e-8736.95RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A6P4Y1E6_BRABE7.570e-1041.24E3 ubiquitin-protein ligase RNF13-like n=2 Tax=Bra... [more]
A0A4W5NC86_9TELE1.700e-935.79RING-type domain-containing protein n=1 Tax=Hucho ... [more]
C0H9F3_SALSA1.770e-935.79RING-type E3 ubiquitin transferase n=23 Tax=Salmon... [more]
I3ET01_NEMP13.620e-934.82RING-type domain-containing protein n=3 Tax=Nemato... [more]
A0A060X2R2_ONCMY4.170e-934.74RING-type E3 ubiquitin transferase n=5 Tax=Salmoni... [more]
A0A7I8LA20_SPIIN8.770e-954.35Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A811Q5Q9_9POAL9.510e-948.21Hypothetical protein n=2 Tax=Miscanthus lutariorip... [more]
A0A5J5EH86_9PEZI1.150e-832.43RING-type domain-containing protein n=1 Tax=Sphaer... [more]
A0A6G1F6E6_9ORYZ1.290e-836.45RING-type E3 ubiquitin transferase n=1 Tax=Oryza m... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 447..488
e-value: 1.8E-5
score: 34.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 446..489
e-value: 2.0E-11
score: 44.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 447..489
score: 12.002429
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 423..498
e-value: 6.0E-18
score: 65.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..608
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 524..556
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..626
NoneNo IPR availablePANTHERPTHR45969RING ZINC FINGER PROTEIN-RELATEDcoord: 398..501
NoneNo IPR availablePANTHERPTHR45969:SF28EMB|CAB89405.1-RELATEDcoord: 398..501
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 391..413
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..390
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 414..626
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 440..494
NoneNo IPR availableTMHMMTMhelixcoord: 391..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2519129..2521109 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1Gchil9202.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 2519129..2521109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=627bp
MVLPQPLLPLLLLLLSLLPPPVLSRESPETLQPGLPLRISVPGDELFTVD
LESYLRAPANLSVDFAFDPPVVEKGHHLPRPIALLHNTSASPSSDNLTAL
LPPSFSQLPHNSDLFLSPAYIRSYNARLLHTGFVSTVRHNNQSVTVYNVA
AFNNPSTFPDAYLTLTWLQEQPACAGYFDSAQPASRPSPCNSRGTCDQSS
HCACQLSFTAPLCTESLSVFSKGASNTPYNESDFEVKPSFLHDRYVAVVQ
PLRTVYVAFNYSQLSINQSYTYYFLVHILKGAALPHINDSLQCELASSPQ
DNSNTMPVWQSDSHAFKQLDAAPGGPFFEANISFKPSGSRYIVALFANAT
HASTTASSDDYAAFAISAPRRIHHPIAKPSPISTQRFLPEAMLPVCLSLI
FVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRMYPAYLADDDEGECPIC
LGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASVRVEHLSDN
RHESVCSRPRSCWSLVFCLSRDGEAGDGPDGAQSDLQDEQQRSLEPQREQ
IHTGGRIVFPDRVNWPLPVRTASSTPRTRSTAHTSEAGSESTSMHTALDL
SFSSRSHQQREQAEQRLSSVLDDPAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD