Gchil9202.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9202.t1
Unique NameGchil9202.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length627
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2519129..2521109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.10427s0024.1.p
PFAMsPA,Rhodanese,zf-RING_11,zf-RING_2
Max annot lvl35493|Streptophyta
KEGG koko:K15692
GOsGO:0000306,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0031090,GO:0031312,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043621,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0098588,GO:0098805
Evalue3.43e-11
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,37QFV@33090|Viridiplantae,3G8ZD@35493|Streptophyta,3HTHW@3699|Brassicales
EC2.3.2.27
DescriptionReceptor homology region transmembrane domain
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9202Gchil9202Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2519129..2521109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1Gchil9202.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2519129..2521109 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1.start1Gchil9202.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2519129..2519131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1.CDS1Gchil9202.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2519129..2520553 +
Gchil9202.t1.CDS2Gchil9202.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2520654..2521109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1.exon1Gchil9202.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2519129..2520553 +
Gchil9202.t1.exon2Gchil9202.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2520654..2521109 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1.intron1Gchil9202.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 2520554..2520653 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9202.t1.stop1Gchil9202.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2521107..2521109 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=627bp
MVLPQPLLPLLLLLLSLLPPPVLSRESPETLQPGLPLRISVPGDELFTVD
LESYLRAPANLSVDFAFDPPVVEKGHHLPRPIALLHNTSASPSSDNLTAL
LPPSFSQLPHNSDLFLSPAYIRSYNARLLHTGFVSTVRHNNQSVTVYNVA
AFNNPSTFPDAYLTLTWLQEQPACAGYFDSAQPASRPSPCNSRGTCDQSS
HCACQLSFTAPLCTESLSVFSKGASNTPYNESDFEVKPSFLHDRYVAVVQ
PLRTVYVAFNYSQLSINQSYTYYFLVHILKGAALPHINDSLQCELASSPQ
DNSNTMPVWQSDSHAFKQLDAAPGGPFFEANISFKPSGSRYIVALFANAT
HASTTASSDDYAAFAISAPRRIHHPIAKPSPISTQRFLPEAMLPVCLSLI
FVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRMYPAYLADDDEGECPIC
LGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASVRVEHLSDN
RHESVCSRPRSCWSLVFCLSRDGEAGDGPDGAQSDLQDEQQRSLEPQREQ
IHTGGRIVFPDRVNWPLPVRTASSTPRTRSTAHTSEAGSESTSMHTALDL
SFSSRSHQQREQAEQRLSSVLDDPAP*
back to top

spliced messenger RNA

>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00004370_pilon:2519129..2521109+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
Atggtgctgccgcagcctctgttgccgttgcttctgctgctgctatcgct
gctgccgccgcccgtgctgTCGCGCGAGTCACCGGAGACCCTCCAGCCCG
GCTTGCCCCTGCGCATCTCAGTCCCCGGCGACGAACTCTTCACCGTTGAC
CTCGAATCATACCTCAGAGCCCCCGCCAACCTTTCTGTTGACTTCGCCTT
CGACCCGCCCGTCGTCGAAAAAGGCCACCACTTGCCGCGTCCCATCGCCC
TGCTGCACAATACCTCTGCCTCACCGTCTTCCGACAATCTCACAGCGCTG
CTTCCTCCGTCGTTTTCTCAACTCCCACACAACTCCGACCTTTTCCTCTC
CCCCGCCTATATCCGTTCCTACAACGCCCGCCTGCTGCACACCGGCTTCG
TGTCTACTGTGCGCCACAACAACCAGTCCGTCACTGTGTACAACGTCGCC
GCTTTCAACAACCCCTCAACCTTTCCAGACGCCTACCTCACCCTCACTTG
GCTGCAGGAGCAGCCCGCCTGCGCCGGTTACTTTGACAGCGCCCAGCCGG
CCAGCCGGCCCAGCCCATGCAATTCGCGCGGCACGTGCGATCAATCATCG
CACTGCGCCTGCCAGTTGTCGTTTACCGCCCCGCTTTGCACCGAGTCCTT
GAGTGTCTTTTCGAAGGGCGCAAGCAACACCCCCTACAATGAGAGCGATT
TTGAAGTGAAGCCGTCTTTTCTGCACGACCGTTATGTCGCTGTTGTTCAA
CCGTTGCGCACCGTCTATGTTGCGTTTAACTACTCGCAACTCTCTATCAA
CCAAAGCTACACCTATTACTTCTTGGTGCACATCTTGAAGGGGGCTGCCC
TTCCCCACATCAACGATTCATTGCAATGCGAGCTAGCTTCCTCTCCCCAG
GACAACAGCAACACCATGCCCGTGTGGCAATCTGATTCTCACGCGTTCAA
ACAGCTTGATGCCGCGCCTGGTGGTCCTTTTTTCGAGGCCAATATCTCAT
TTAAACCAAGCGGATCCCGCTACATCGTTGCTCTTTTCGCGAATGCCACA
CATGCTTCTACCACTGCATCGTCGGATGACTACGCTGCCTTTGCCATTTC
CGCTCCGCGTCGTATTCATCATCCGATTGCAAAGCCGTCGCCCATTTCTA
CGCAAAGGTTTCTGCCAGAGGCTATGCTGCCTGTTTGCTTATCGCTCATT
TTCGTTGCTGCGCTTGCGGTTTTGTTGGTGTTCTGGCTTGACCGACGCTC
TGGGCGACGCAAGATGGTCGATCGATTGTCGGAAGCTGAGCTGCTTAGAA
TGTACCCTGCGTATCTGGCGGACGATGACGAGGGCGAATGCCCAATTTGC
CTGGGTGACATGCAGCGTGGAGATACACTGCGAGCTCTTCGTTGCGAGCA
TCACTTTCATGCTCAATGTCTGGATCCGTGGGTGTGTGGCACCAGAGCCA
CGTGCCCAACATGTCGGGCAAGTGTACGCGTGGAACATCTTTCGGACAAC
CGTCACGAGTCGGTTTGCTCGCGCCCTCGCTCTTGTTGGTCGCTTGTATT
TTGTTTGTCGCGTGATGGAGAAGCAGGGGATGGGCCGGATGGAGCGCAAT
CTGATCTGCAAGACGAACAGCAGCGGTCGCTGGAGCCGCAGCGTGAGCAA
ATACACACCGGTGGCAGAATTGTGTTTCCGGACCGGGTCAACTGGCCGCT
TCCGGTGAGAACGGCGTCTAGCACGCCTCGCACTCGATCGACGGCTCACA
CGTCTGAGGCAGGTAGCGAAAGCACCTCTATGCACACTGCACTGGACTTG
TCGTTTAGCAGTCGCTCGCATCAACAGCGAGAACAAGCAGAACAGCGACT
TTCCAGCGTTCTGGATGACCCAGCGCCATGA
back to top

protein sequence of Gchil9202.t1

>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=627bp
MVLPQPLLPLLLLLLSLLPPPVLSRESPETLQPGLPLRISVPGDELFTVD
LESYLRAPANLSVDFAFDPPVVEKGHHLPRPIALLHNTSASPSSDNLTAL
LPPSFSQLPHNSDLFLSPAYIRSYNARLLHTGFVSTVRHNNQSVTVYNVA
AFNNPSTFPDAYLTLTWLQEQPACAGYFDSAQPASRPSPCNSRGTCDQSS
HCACQLSFTAPLCTESLSVFSKGASNTPYNESDFEVKPSFLHDRYVAVVQ
PLRTVYVAFNYSQLSINQSYTYYFLVHILKGAALPHINDSLQCELASSPQ
DNSNTMPVWQSDSHAFKQLDAAPGGPFFEANISFKPSGSRYIVALFANAT
HASTTASSDDYAAFAISAPRRIHHPIAKPSPISTQRFLPEAMLPVCLSLI
FVAALAVLLVFWLDRRSGRRKMVDRLSEAELLRMYPAYLADDDEGECPIC
LGDMQRGDTLRALRCEHHFHAQCLDPWVCGTRATCPTCRASVRVEHLSDN
RHESVCSRPRSCWSLVFCLSRDGEAGDGPDGAQSDLQDEQQRSLEPQREQ
IHTGGRIVFPDRVNWPLPVRTASSTPRTRSTAHTSEAGSESTSMHTALDL
SFSSRSHQQREQAEQRLSSVLDDPAP*
back to top

mRNA from alignment at tig00004370_pilon:2519129..2521109+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1981bp|location=Sequence derived from alignment at tig00004370_pilon:2519129..2521109+ (Gracilaria chilensis NLEC103_M9 male)
Atggtgctgccgcagcctctgttgccgttgcttctgctgctgctatcgct
gctgccgccgcccgtgctgTCGCGCGAGTCACCGGAGACCCTCCAGCCCG
GCTTGCCCCTGCGCATCTCAGTCCCCGGCGACGAACTCTTCACCGTTGAC
CTCGAATCATACCTCAGAGCCCCCGCCAACCTTTCTGTTGACTTCGCCTT
CGACCCGCCCGTCGTCGAAAAAGGCCACCACTTGCCGCGTCCCATCGCCC
TGCTGCACAATACCTCTGCCTCACCGTCTTCCGACAATCTCACAGCGCTG
CTTCCTCCGTCGTTTTCTCAACTCCCACACAACTCCGACCTTTTCCTCTC
CCCCGCCTATATCCGTTCCTACAACGCCCGCCTGCTGCACACCGGCTTCG
TGTCTACTGTGCGCCACAACAACCAGTCCGTCACTGTGTACAACGTCGCC
GCTTTCAACAACCCCTCAACCTTTCCAGACGCCTACCTCACCCTCACTTG
GCTGCAGGAGCAGCCCGCCTGCGCCGGTTACTTTGACAGCGCCCAGCCGG
CCAGCCGGCCCAGCCCATGCAATTCGCGCGGCACGTGCGATCAATCATCG
CACTGCGCCTGCCAGTTGTCGTTTACCGCCCCGCTTTGCACCGAGTCCTT
GAGTGTCTTTTCGAAGGGCGCAAGCAACACCCCCTACAATGAGAGCGATT
TTGAAGTGAAGCCGTCTTTTCTGCACGACCGTTATGTCGCTGTTGTTCAA
CCGTTGCGCACCGTCTATGTTGCGTTTAACTACTCGCAACTCTCTATCAA
CCAAAGCTACACCTATTACTTCTTGGTGCACATCTTGAAGGGGGCTGCCC
TTCCCCACATCAACGATTCATTGCAATGCGAGCTAGCTTCCTCTCCCCAG
GACAACAGCAACACCATGCCCGTGTGGCAATCTGATTCTCACGCGTTCAA
ACAGCTTGATGCCGCGCCTGGTGGTCCTTTTTTCGAGGCCAATATCTCAT
TTAAACCAAGCGGATCCCGCTACATCGTTGCTCTTTTCGCGAATGCCACA
CATGCTTCTACCACTGCATCGTCGGATGACTACGCTGCCTTTGCCATTTC
CGCTCCGCGTCGTATTCATCATCCGATTGCAAAGCCGTCGCCCATTTCTA
CGCAAAGGTTTCTGCCAGAGGCTATGCTGCCTGTTTGCTTATCGCTCATT
TTCGTTGCTGCGCTTGCGGTTTTGTTGGTGTTCTGGCTTGACCGACGCTC
TGGGCGACGCAAGATGGTCGATCGATTGTCGGAAGCTGAGCTGCTTAGAA
TGTACCCTGCGTATCTGGCGGACGATGACGAGGGCGAATGCCCAATTTGC
CTGGGTGACATGCAGCGTGGAGATACACTGCGAGCTCTTCGTTGCGAGCA
TCACTTTCATGCTCAATGTCTGGATGTAGGTTATATTTACGCGCCACTCC
GCTCGTGTTTTTATGTTAACGGATTTGATTTGCTAACGAGCTCAATTTGT
TTGTTTTTTTGCTCCTACTCTACAGCCGTGGGTGTGTGGCACCAGAGCCA
CGTGCCCAACATGTCGGGCAAGTGTACGCGTGGAACATCTTTCGGACAAC
CGTCACGAGTCGGTTTGCTCGCGCCCTCGCTCTTGTTGGTCGCTTGTATT
TTGTTTGTCGCGTGATGGAGAAGCAGGGGATGGGCCGGATGGAGCGCAAT
CTGATCTGCAAGACGAACAGCAGCGGTCGCTGGAGCCGCAGCGTGAGCAA
ATACACACCGGTGGCAGAATTGTGTTTCCGGACCGGGTCAACTGGCCGCT
TCCGGTGAGAACGGCGTCTAGCACGCCTCGCACTCGATCGACGGCTCACA
CGTCTGAGGCAGGTAGCGAAAGCACCTCTATGCACACTGCACTGGACTTG
TCGTTTAGCAGTCGCTCGCATCAACAGCGAGAACAAGCAGAACAGCGACT
TTCCAGCGTTCTGGATGACCCAGCGCCATGA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:2519129..2521109+

>Gchil9202.t1 ID=Gchil9202.t1|Name=Gchil9202.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1881bp|location=Sequence derived from alignment at tig00004370_pilon:2519129..2521109+ (Gracilaria chilensis NLEC103_M9 male)
Atggtgctgccgcagcctctgttgccgttgcttctgctgctgctatcgct
gctgccgccgcccgtgctgTCGCGCGAGTCACCGGAGACCCTCCAGCCCG
GCTTGCCCCTGCGCATCTCAGTCCCCGGCGACGAACTCTTCACCGTTGAC
CTCGAATCATACCTCAGAGCCCCCGCCAACCTTTCTGTTGACTTCGCCTT
CGACCCGCCCGTCGTCGAAAAAGGCCACCACTTGCCGCGTCCCATCGCCC
TGCTGCACAATACCTCTGCCTCACCGTCTTCCGACAATCTCACAGCGCTG
CTTCCTCCGTCGTTTTCTCAACTCCCACACAACTCCGACCTTTTCCTCTC
CCCCGCCTATATCCGTTCCTACAACGCCCGCCTGCTGCACACCGGCTTCG
TGTCTACTGTGCGCCACAACAACCAGTCCGTCACTGTGTACAACGTCGCC
GCTTTCAACAACCCCTCAACCTTTCCAGACGCCTACCTCACCCTCACTTG
GCTGCAGGAGCAGCCCGCCTGCGCCGGTTACTTTGACAGCGCCCAGCCGG
CCAGCCGGCCCAGCCCATGCAATTCGCGCGGCACGTGCGATCAATCATCG
CACTGCGCCTGCCAGTTGTCGTTTACCGCCCCGCTTTGCACCGAGTCCTT
GAGTGTCTTTTCGAAGGGCGCAAGCAACACCCCCTACAATGAGAGCGATT
TTGAAGTGAAGCCGTCTTTTCTGCACGACCGTTATGTCGCTGTTGTTCAA
CCGTTGCGCACCGTCTATGTTGCGTTTAACTACTCGCAACTCTCTATCAA
CCAAAGCTACACCTATTACTTCTTGGTGCACATCTTGAAGGGGGCTGCCC
TTCCCCACATCAACGATTCATTGCAATGCGAGCTAGCTTCCTCTCCCCAG
GACAACAGCAACACCATGCCCGTGTGGCAATCTGATTCTCACGCGTTCAA
ACAGCTTGATGCCGCGCCTGGTGGTCCTTTTTTCGAGGCCAATATCTCAT
TTAAACCAAGCGGATCCCGCTACATCGTTGCTCTTTTCGCGAATGCCACA
CATGCTTCTACCACTGCATCGTCGGATGACTACGCTGCCTTTGCCATTTC
CGCTCCGCGTCGTATTCATCATCCGATTGCAAAGCCGTCGCCCATTTCTA
CGCAAAGGTTTCTGCCAGAGGCTATGCTGCCTGTTTGCTTATCGCTCATT
TTCGTTGCTGCGCTTGCGGTTTTGTTGGTGTTCTGGCTTGACCGACGCTC
TGGGCGACGCAAGATGGTCGATCGATTGTCGGAAGCTGAGCTGCTTAGAA
TGTACCCTGCGTATCTGGCGGACGATGACGAGGGCGAATGCCCAATTTGC
CTGGGTGACATGCAGCGTGGAGATACACTGCGAGCTCTTCGTTGCGAGCA
TCACTTTCATGCTCAATGTCTGGATCCGTGGGTGTGTGGCACCAGAGCCA
CGTGCCCAACATGTCGGGCAAGTGTACGCGTGGAACATCTTTCGGACAAC
CGTCACGAGTCGGTTTGCTCGCGCCCTCGCTCTTGTTGGTCGCTTGTATT
TTGTTTGTCGCGTGATGGAGAAGCAGGGGATGGGCCGGATGGAGCGCAAT
CTGATCTGCAAGACGAACAGCAGCGGTCGCTGGAGCCGCAGCGTGAGCAA
ATACACACCGGTGGCAGAATTGTGTTTCCGGACCGGGTCAACTGGCCGCT
TCCGGTGAGAACGGCGTCTAGCACGCCTCGCACTCGATCGACGGCTCACA
CGTCTGAGGCAGGTAGCGAAAGCACCTCTATGCACACTGCACTGGACTTG
TCGTTTAGCAGTCGCTCGCATCAACAGCGAGAACAAGCAGAACAGCGACT
TTCCAGCGTTCTGGATGACCCAGCGCCATGA
back to top