Gchil8919.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8919.t1
Unique NameGchil8919.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:115474..116157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8919Gchil8919Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 115474..116157 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1.start1Gchil8919.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 115474..115476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1.CDS1Gchil8919.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 115474..116157 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1.exon1Gchil8919.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 115474..116157 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1.stop1Gchil8919.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 116155..116157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1Gchil8919.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 115474..116157 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MAKHERNRAIRIYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQ
DSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAI
VIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDR
LECRGFFDNQCINCITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVN
RIFLPVAIVAAVLALLLIVDFLLTCCL*
back to top

spliced messenger RNA

>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004370_pilon:115474..116157+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAGCACGAGAGGAATCGAGCCATTCGCATATACCATGGCTTTGT
GTCTATTCTGTTGTTGCTCGGCGGCGGCGCGTTGTTGGGCTTGGGCATTT
GGCTGGAGGTCTCTGAGAACAGTACCCCACTTGGGCTTGATTACAACCAA
GACTCATACTTTGATGTTGTGGTCCACACTGGCTTGGCTTCAATGATCGC
GGGAGGTTTCCTTCTCCTCGCAGCGCTCGCGTCCATTATTTCGCTCTCAA
GAAAATGTATCGGAGTTACGTTCCGCGTGATATACATAATCATGGCCATT
GTAATTGCAATTGTTCTCGTTGGAACTTGCGTCATCTCTGCGCTCGTTGT
CGATAGAAAGGACGATGAGGGCACTAAAAATATCCTACAGGCGGCGTGGG
AAGCGACTGTCAATCGTGATAAGGATGTGGTGTGCAGAATAGAAGACCGT
CTCGAATGTCGTGGCTTCTTTGACAATCAATGTATAAACTGCATTACTGG
CCTGGAGGACAACTGTGTGGAGGAGGTCGCTTGTGCTAGCTGCTCGACTG
AAGCAACTGGCCTGCCCGGTTGTTACAATAAGATTAGTAGGCTGGTGAAT
CGGATATTCCTACCTGTTGCCATTGTGGCGGCAGTTCTGGCACTCCTGCT
GATAGTGGACTTTCTGCTCACATGCTGCTTGTAA
back to top

protein sequence of Gchil8919.t1

>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MAKHERNRAIRIYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQ
DSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAI
VIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDR
LECRGFFDNQCINCITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVN
RIFLPVAIVAAVLALLLIVDFLLTCCL*
back to top

mRNA from alignment at tig00004370_pilon:115474..116157+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004370_pilon:115474..116157+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAAGCACGAGAGGAATCGAGCCATTCGCATATACCATGGCTTTGT
GTCTATTCTGTTGTTGCTCGGCGGCGGCGCGTTGTTGGGCTTGGGCATTT
GGCTGGAGGTCTCTGAGAACAGTACCCCACTTGGGCTTGATTACAACCAA
GACTCATACTTTGATGTTGTGGTCCACACTGGCTTGGCTTCAATGATCGC
GGGAGGTTTCCTTCTCCTCGCAGCGCTCGCGTCCATTATTTCGCTCTCAA
GAAAATGTATCGGAGTTACGTTCCGCGTGATATACATAATCATGGCCATT
GTAATTGCAATTGTTCTCGTTGGAACTTGCGTCATCTCTGCGCTCGTTGT
CGATAGAAAGGACGATGAGGGCACTAAAAATATCCTACAGGCGGCGTGGG
AAGCGACTGTCAATCGTGATAAGGATGTGGTGTGCAGAATAGAAGACCGT
CTCGAATGTCGTGGCTTCTTTGACAATCAATGTATAAACTGCATTACTGG
CCTGGAGGACAACTGTGTGGAGGAGGTCGCTTGTGCTAGCTGCTCGACTG
AAGCAACTGGCCTGCCCGGTTGTTACAATAAGATTAGTAGGCTGGTGAAT
CGGATATTCCTACCTGTTGCCATTGTGGCGGCAGTTCTGGCACTCCTGCT
GATAGTGGACTTTCTGCTCACATGCTGCTTGTAA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:115474..116157+

>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004370_pilon:115474..116157+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAAGCACGAGAGGAATCGAGCCATTCGCATATACCATGGCTTTGT
GTCTATTCTGTTGTTGCTCGGCGGCGGCGCGTTGTTGGGCTTGGGCATTT
GGCTGGAGGTCTCTGAGAACAGTACCCCACTTGGGCTTGATTACAACCAA
GACTCATACTTTGATGTTGTGGTCCACACTGGCTTGGCTTCAATGATCGC
GGGAGGTTTCCTTCTCCTCGCAGCGCTCGCGTCCATTATTTCGCTCTCAA
GAAAATGTATCGGAGTTACGTTCCGCGTGATATACATAATCATGGCCATT
GTAATTGCAATTGTTCTCGTTGGAACTTGCGTCATCTCTGCGCTCGTTGT
CGATAGAAAGGACGATGAGGGCACTAAAAATATCCTACAGGCGGCGTGGG
AAGCGACTGTCAATCGTGATAAGGATGTGGTGTGCAGAATAGAAGACCGT
CTCGAATGTCGTGGCTTCTTTGACAATCAATGTATAAACTGCATTACTGG
CCTGGAGGACAACTGTGTGGAGGAGGTCGCTTGTGCTAGCTGCTCGACTG
AAGCAACTGGCCTGCCCGGTTGTTACAATAAGATTAGTAGGCTGGTGAAT
CGGATATTCCTACCTGTTGCCATTGTGGCGGCAGTTCTGGCACTCCTGCT
GATAGTGGACTTTCTGCTCACATGCTGCTTGTAA
back to top