Gchil7385.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7385.t1
Unique NameGchil7385.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:806825..808402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8081.XP_008412715.1
Max annot lvl33208|Metazoa
Evalue1.23e-11
EggNOG OGs2CNDF@1|root,2QVE9@2759|Eukaryota,39T44@33154|Opisthokonta,3B9X6@33208|Metazoa,3D5K1@33213|Bilateria,48DI7@7711|Chordata,49ANG@7742|Vertebrata,49T8D@7898|Actinopterygii
DescriptionTrichohyalin-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7385Gchil7385Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 806825..808402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7385.t1.stop1Gchil7385.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 806825..806827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7385.t1.CDS1Gchil7385.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 806825..808402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7385.t1.exon1Gchil7385.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 806825..808402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7385.t1.start1Gchil7385.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 808400..808402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7385.t1Gchil7385.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 806825..808402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7385.t1 ID=Gchil7385.t1|Name=Gchil7385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=526bp
MVSEPLDPSSWHHRSNLPRRNHAVPPASHLLTLPPQQPLSIPTSTHYNLR
PPSQIPPMQLPAVPTTNTLTPTMLSHPAASNIRKRQYRFSVGADIALLRL
VADRNPYGAPHGGRLQKWQAIADTLRISAINVDFRRARDRTALLIDQWRK
QDFSLLRRSGSGNQHDQAEKERLLDIVSNMEHAAKPRDNLSDWKPTESSP
TILTHPHSVLATDAQRTSHSPDCHPNTSTADNVQNNVSSLTHPPDATPSR
PISLANPFSAPITPCVVGAPSVRPNLRSVSPPNSNAAPPHASLPPLERQR
DIHTNAETAALQHSSRSQPLANSNGVKRLGTHLSPPHCGSTAARPCAQDA
KHNSNALFGRTSSALSSLWAQSPSREVDAHVSVPNTLSNTTKRAPCNTQN
IQLEAPACEHGRAELQAAFGSNSSNSSAHICSHFSKVEQLLQQILLSMQK
KMEHDERRLEWEQHCERRREQRQNERQERGFRDVGRDEPLRKVASHSEER
QHHREVISQRRPHGMRNGDHSEKND*
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spliced messenger RNA

>Gchil7385.t1 ID=Gchil7385.t1|Name=Gchil7385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000007_pilon:806825..808402- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCCGAACCACTTGACCCTTCCAGCTGGCACCACCGCTCCAACCT
CCCTCGTCGCAACCATGCCGTCCCGCCCGCCTCCCACCTGCTCACTCTTC
CTCCCCAGCAACCGCTTTCCATCCCCACTTCCACCCACTACAATCTCCGA
CCTCCCTCCCAGATCCCACCCATGCAACTACCCGCCGTTCCCACCACCAA
CACCCTCACCCCGACCATGCTCTCACACCCGGCCGCCTCCAACATCCGCA
AGAGGCAGTACCGCTTCTCTGTGGGCGCAGACATTGCACTGCTCCGCCTA
GTGGCCGACCGAAATCCCTACGGCGCCCCTCACGGCGGTCGTCTTCAAAA
GTGGCAAGCCATTGCCGACACCCTCCGTATTTCCGCTATCAACGTCGACT
TTCGACGCGCCCGAGATCGTACTGCCTTGCTCATCGACCAGTGGAGAAAG
CAGGATTTCTCCTTGTTGCGTCGCAGCGGCTCAGGAAATCAGCATGATCA
GGCTGAAAAGGAGCGTCTGCTTGACATAGTTTCCAACATGGAACACGCTG
CAAAGCCGCGTGACAACCTGTCAGATTGGAAGCCTACCGAATCCTCTCCT
ACCATCCTCACACACCCCCACTCCGTTCTCGCCACAGATGCGCAACGCAC
GTCGCACTCTCCTGACTGCCATCCCAACACCTCCACTGCAGACAACGTTC
AGAACAATGTGTCTTCTTTGACGCACCCCCCCGATGCAACCCCTTCGAGA
CCCATTTCTCTGGCCAATCCCTTTTCTGCGCCGATAACGCCATGTGTTGT
TGGCGCCCCGTCCGTGCGACCCAATTTGCGATCTGTTTCGCCGCCAAACA
GTAACGCTGCCCCGCCACATGCTTCTCTACCACCGCTTGAACGGCAGCGC
GACATTCACACCAACGCGGAAACGGCCGCTTTGCAGCATAGCAGCCGCTC
TCAGCCACTCGCGAATAGTAACGGTGTCAAACGCTTGGGCACACACCTCA
GCCCTCCTCACTGTGGCTCTACTGCAGCAAGGCCTTGCGCACAGGACGCC
AAGCATAACTCAAACGCGCTGTTTGGTCGTACCAGCTCTGCGTTGTCGTC
ACTGTGGGCGCAGAGTCCCTCTCGTGAAGTGGACGCGCACGTCTCGGTCC
CAAACACGCTGTCAAATACAACGAAAAGGGCCCCATGCAACACCCAGAAC
ATCCAACTCGAAGCGCCTGCGTGCGAGCACGGCAGGGCTGAACTGCAAGC
AGCTTTCGGTTCCAACAGCTCCAACAGCAGCGCACACATCTGTTCGCACT
TTAGCAAAGTGGAGCAATTGCTGCAACAGATACTGCTTAGTATGCAGAAG
AAAATGGAACATGACGAGCGGCGTCTAGAATGGGAGCAGCATTGTGAGCG
TAGACGAGAGCAAAGGCAAAATGAACGTCAGGAAAGAGGGTTCCGCGACG
TTGGGCGTGACGAACCACTGCGGAAAGTGGCGAGTCACAGTGAGGAACGC
CAGCACCATCGAGAGGTCATCTCTCAAAGACGACCTCATGGGATGCGAAA
TGGCGATCATTCGGAAAAGAATGATTAG
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protein sequence of Gchil7385.t1

>Gchil7385.t1 ID=Gchil7385.t1|Name=Gchil7385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=526bp
MVSEPLDPSSWHHRSNLPRRNHAVPPASHLLTLPPQQPLSIPTSTHYNLR
PPSQIPPMQLPAVPTTNTLTPTMLSHPAASNIRKRQYRFSVGADIALLRL
VADRNPYGAPHGGRLQKWQAIADTLRISAINVDFRRARDRTALLIDQWRK
QDFSLLRRSGSGNQHDQAEKERLLDIVSNMEHAAKPRDNLSDWKPTESSP
TILTHPHSVLATDAQRTSHSPDCHPNTSTADNVQNNVSSLTHPPDATPSR
PISLANPFSAPITPCVVGAPSVRPNLRSVSPPNSNAAPPHASLPPLERQR
DIHTNAETAALQHSSRSQPLANSNGVKRLGTHLSPPHCGSTAARPCAQDA
KHNSNALFGRTSSALSSLWAQSPSREVDAHVSVPNTLSNTTKRAPCNTQN
IQLEAPACEHGRAELQAAFGSNSSNSSAHICSHFSKVEQLLQQILLSMQK
KMEHDERRLEWEQHCERRREQRQNERQERGFRDVGRDEPLRKVASHSEER
QHHREVISQRRPHGMRNGDHSEKND*
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mRNA from alignment at tig00000007_pilon:806825..808402-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7385.t1 ID=Gchil7385.t1|Name=Gchil7385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000007_pilon:806825..808402- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCCGAACCACTTGACCCTTCCAGCTGGCACCACCGCTCCAACCT
CCCTCGTCGCAACCATGCCGTCCCGCCCGCCTCCCACCTGCTCACTCTTC
CTCCCCAGCAACCGCTTTCCATCCCCACTTCCACCCACTACAATCTCCGA
CCTCCCTCCCAGATCCCACCCATGCAACTACCCGCCGTTCCCACCACCAA
CACCCTCACCCCGACCATGCTCTCACACCCGGCCGCCTCCAACATCCGCA
AGAGGCAGTACCGCTTCTCTGTGGGCGCAGACATTGCACTGCTCCGCCTA
GTGGCCGACCGAAATCCCTACGGCGCCCCTCACGGCGGTCGTCTTCAAAA
GTGGCAAGCCATTGCCGACACCCTCCGTATTTCCGCTATCAACGTCGACT
TTCGACGCGCCCGAGATCGTACTGCCTTGCTCATCGACCAGTGGAGAAAG
CAGGATTTCTCCTTGTTGCGTCGCAGCGGCTCAGGAAATCAGCATGATCA
GGCTGAAAAGGAGCGTCTGCTTGACATAGTTTCCAACATGGAACACGCTG
CAAAGCCGCGTGACAACCTGTCAGATTGGAAGCCTACCGAATCCTCTCCT
ACCATCCTCACACACCCCCACTCCGTTCTCGCCACAGATGCGCAACGCAC
GTCGCACTCTCCTGACTGCCATCCCAACACCTCCACTGCAGACAACGTTC
AGAACAATGTGTCTTCTTTGACGCACCCCCCCGATGCAACCCCTTCGAGA
CCCATTTCTCTGGCCAATCCCTTTTCTGCGCCGATAACGCCATGTGTTGT
TGGCGCCCCGTCCGTGCGACCCAATTTGCGATCTGTTTCGCCGCCAAACA
GTAACGCTGCCCCGCCACATGCTTCTCTACCACCGCTTGAACGGCAGCGC
GACATTCACACCAACGCGGAAACGGCCGCTTTGCAGCATAGCAGCCGCTC
TCAGCCACTCGCGAATAGTAACGGTGTCAAACGCTTGGGCACACACCTCA
GCCCTCCTCACTGTGGCTCTACTGCAGCAAGGCCTTGCGCACAGGACGCC
AAGCATAACTCAAACGCGCTGTTTGGTCGTACCAGCTCTGCGTTGTCGTC
ACTGTGGGCGCAGAGTCCCTCTCGTGAAGTGGACGCGCACGTCTCGGTCC
CAAACACGCTGTCAAATACAACGAAAAGGGCCCCATGCAACACCCAGAAC
ATCCAACTCGAAGCGCCTGCGTGCGAGCACGGCAGGGCTGAACTGCAAGC
AGCTTTCGGTTCCAACAGCTCCAACAGCAGCGCACACATCTGTTCGCACT
TTAGCAAAGTGGAGCAATTGCTGCAACAGATACTGCTTAGTATGCAGAAG
AAAATGGAACATGACGAGCGGCGTCTAGAATGGGAGCAGCATTGTGAGCG
TAGACGAGAGCAAAGGCAAAATGAACGTCAGGAAAGAGGGTTCCGCGACG
TTGGGCGTGACGAACCACTGCGGAAAGTGGCGAGTCACAGTGAGGAACGC
CAGCACCATCGAGAGGTCATCTCTCAAAGACGACCTCATGGGATGCGAAA
TGGCGATCATTCGGAAAAGAATGATTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:806825..808402-

>Gchil7385.t1 ID=Gchil7385.t1|Name=Gchil7385.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1578bp|location=Sequence derived from alignment at tig00000007_pilon:806825..808402- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTCCGAACCACTTGACCCTTCCAGCTGGCACCACCGCTCCAACCT
CCCTCGTCGCAACCATGCCGTCCCGCCCGCCTCCCACCTGCTCACTCTTC
CTCCCCAGCAACCGCTTTCCATCCCCACTTCCACCCACTACAATCTCCGA
CCTCCCTCCCAGATCCCACCCATGCAACTACCCGCCGTTCCCACCACCAA
CACCCTCACCCCGACCATGCTCTCACACCCGGCCGCCTCCAACATCCGCA
AGAGGCAGTACCGCTTCTCTGTGGGCGCAGACATTGCACTGCTCCGCCTA
GTGGCCGACCGAAATCCCTACGGCGCCCCTCACGGCGGTCGTCTTCAAAA
GTGGCAAGCCATTGCCGACACCCTCCGTATTTCCGCTATCAACGTCGACT
TTCGACGCGCCCGAGATCGTACTGCCTTGCTCATCGACCAGTGGAGAAAG
CAGGATTTCTCCTTGTTGCGTCGCAGCGGCTCAGGAAATCAGCATGATCA
GGCTGAAAAGGAGCGTCTGCTTGACATAGTTTCCAACATGGAACACGCTG
CAAAGCCGCGTGACAACCTGTCAGATTGGAAGCCTACCGAATCCTCTCCT
ACCATCCTCACACACCCCCACTCCGTTCTCGCCACAGATGCGCAACGCAC
GTCGCACTCTCCTGACTGCCATCCCAACACCTCCACTGCAGACAACGTTC
AGAACAATGTGTCTTCTTTGACGCACCCCCCCGATGCAACCCCTTCGAGA
CCCATTTCTCTGGCCAATCCCTTTTCTGCGCCGATAACGCCATGTGTTGT
TGGCGCCCCGTCCGTGCGACCCAATTTGCGATCTGTTTCGCCGCCAAACA
GTAACGCTGCCCCGCCACATGCTTCTCTACCACCGCTTGAACGGCAGCGC
GACATTCACACCAACGCGGAAACGGCCGCTTTGCAGCATAGCAGCCGCTC
TCAGCCACTCGCGAATAGTAACGGTGTCAAACGCTTGGGCACACACCTCA
GCCCTCCTCACTGTGGCTCTACTGCAGCAAGGCCTTGCGCACAGGACGCC
AAGCATAACTCAAACGCGCTGTTTGGTCGTACCAGCTCTGCGTTGTCGTC
ACTGTGGGCGCAGAGTCCCTCTCGTGAAGTGGACGCGCACGTCTCGGTCC
CAAACACGCTGTCAAATACAACGAAAAGGGCCCCATGCAACACCCAGAAC
ATCCAACTCGAAGCGCCTGCGTGCGAGCACGGCAGGGCTGAACTGCAAGC
AGCTTTCGGTTCCAACAGCTCCAACAGCAGCGCACACATCTGTTCGCACT
TTAGCAAAGTGGAGCAATTGCTGCAACAGATACTGCTTAGTATGCAGAAG
AAAATGGAACATGACGAGCGGCGTCTAGAATGGGAGCAGCATTGTGAGCG
TAGACGAGAGCAAAGGCAAAATGAACGTCAGGAAAGAGGGTTCCGCGACG
TTGGGCGTGACGAACCACTGCGGAAAGTGGCGAGTCACAGTGAGGAACGC
CAGCACCATCGAGAGGTCATCTCTCAAAGACGACCTCATGGGATGCGAAA
TGGCGATCATTCGGAAAAGAATGATTAG
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