Gchil9056.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9056.t1
Unique NameGchil9056.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1206791..1207656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008867190.1
Preferred nameJMJD7
PFAMsC2,Cupin_8,PLA2_B
Max annot lvl2759|Eukaryota
KEGG rclassRC00037,RC00094
KEGG koko:K16342,ko:K19219,ko:K20989
KEGG TC2.A.21.6
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map01100,map01110,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue3.66e-41
EggNOG OGsCOG1226@1|root,KOG2508@2759|Eukaryota
EC3.1.1.4
DescriptionCupin-like domain
COG categoryP
BRITEko00000,ko00001,ko01000,ko02000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9056Gchil9056Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1206791..1207656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1Gchil9056.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1206791..1207656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1.stop1Gchil9056.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1206791..1206793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1.CDS1Gchil9056.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1206791..1206987 -
Gchil9056.t1.CDS2Gchil9056.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1207086..1207656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1.exon1Gchil9056.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1206791..1206987 -
Gchil9056.t1.exon2Gchil9056.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1207086..1207656 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1.intron1Gchil9056.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1206988..1207085 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9056.t1.start1Gchil9056.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1207654..1207656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9056.t1 ID=Gchil9056.t1|Name=Gchil9056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=256bp
MLDALLAHEVHQKRGSCDCSHVPYYSAQNSSLATDMPQLLEDIDHSLFQF
ACDAFKNAQPSAQNIWIGDGRSVSTTHADPYENMYTVVTGTKIFELRPPC
DAAFLSKPSLQRARWKADESLKDADKSGGPKTVSDSENALRPVTQFDGWK
LIKEEGETGWIDEAEIDEKHSDSLEIRLYAGDVLYIPALWYHRVSQEGIT
IAINFWYEMCFGRDWIYREFCAGLREAYEKEEMDEVDQENGVKVEACFDH
ACSPH*
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spliced messenger RNA

>Gchil9056.t1 ID=Gchil9056.t1|Name=Gchil9056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00004370_pilon:1206791..1207656- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATGCGCTTCTCGCGCACGAAGTTCACCAGAAACGCGGTTCATG
TGATTGTAGTCACGTCCCTTATTATTCTGCTCAGAACTCTAGTCTGGCCA
CAGACATGCCGCAGTTGCTTGAAGACATTGATCATTCGTTGTTTCAATTT
GCCTGTGATGCGTTCAAGAATGCTCAACCAAGCGCACAAAACATATGGAT
TGGTGATGGTCGTTCTGTATCAACGACTCATGCCGATCCGTATGAGAATA
TGTACACAGTTGTAACAGGAACAAAGATATTTGAACTACGTCCACCATGT
GACGCGGCGTTTCTTAGCAAACCGTCTTTGCAGAGAGCAAGATGGAAGGC
GGATGAGAGTTTGAAGGACGCCGACAAGAGTGGGGGACCAAAAACTGTTT
CAGATTCTGAAAATGCGCTTCGGCCCGTGACTCAATTTGATGGATGGAAG
CTAATAAAGGAAGAGGGGGAGACTGGTTGGATCGATGAAGCCGAAATAGA
TGAAAAACATTCAGACAGTCTAGAAATTCGCTTATATGCTGGTGACGTGT
TGTACATTCCCGCTTTATGGTATCACCGAGTTTCTCAAGAAGGTATAACG
ATAGCTATCAATTTTTGGTACGAAATGTGCTTTGGACGAGATTGGATCTA
CAGAGAATTTTGCGCGGGCCTACGGGAGGCATATGAAAAGGAAGAAATGG
ATGAGGTTGACCAAGAAAATGGGGTGAAAGTAGAGGCGTGCTTCGATCAT
GCTTGCAGTCCGCATTAA
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protein sequence of Gchil9056.t1

>Gchil9056.t1 ID=Gchil9056.t1|Name=Gchil9056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=256bp
MLDALLAHEVHQKRGSCDCSHVPYYSAQNSSLATDMPQLLEDIDHSLFQF
ACDAFKNAQPSAQNIWIGDGRSVSTTHADPYENMYTVVTGTKIFELRPPC
DAAFLSKPSLQRARWKADESLKDADKSGGPKTVSDSENALRPVTQFDGWK
LIKEEGETGWIDEAEIDEKHSDSLEIRLYAGDVLYIPALWYHRVSQEGIT
IAINFWYEMCFGRDWIYREFCAGLREAYEKEEMDEVDQENGVKVEACFDH
ACSPH*
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mRNA from alignment at tig00004370_pilon:1206791..1207656-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9056.t1 ID=Gchil9056.t1|Name=Gchil9056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=866bp|location=Sequence derived from alignment at tig00004370_pilon:1206791..1207656- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGATGCGCTTCTCGCGCACGAAGTTCACCAGAAACGCGGTTCATG
TGATTGTAGTCACGTCCCTTATTATTCTGCTCAGAACTCTAGTCTGGCCA
CAGACATGCCGCAGTTGCTTGAAGACATTGATCATTCGTTGTTTCAATTT
GCCTGTGATGCGTTCAAGAATGCTCAACCAAGCGCACAAAACATATGGAT
TGGTGATGGTCGTTCTGTATCAACGACTCATGCCGATCCGTATGAGAATA
TGTACACAGTTGTAACAGGAACAAAGATATTTGAACTACGTCCACCATGT
GACGCGGCGTTTCTTAGCAAACCGTCTTTGCAGAGAGCAAGATGGAAGGC
GGATGAGAGTTTGAAGGACGCCGACAAGAGTGGGGGACCAAAAACTGTTT
CAGATTCTGAAAATGCGCTTCGGCCCGTGACTCAATTTGATGGATGGAAG
CTAATAAAGGAAGAGGGGGAGACTGGTTGGATCGATGAAGCCGAAATAGA
TGAAAAACATTCAGACAGTCTAGAAATTCGCTTATATGCTGGTGACGTGT
TGTACATTCCCGCTTTATGGTGTTCGTTCTTCACGAATTGTCGAGCGGGT
CGATTTTGTTATGTTCTAAATCTGACTCTGACTAATGTCGTTTTTTCATA
TTTGTTGTTGTTGGCGCAGATCACCGAGTTTCTCAAGAAGGTATAACGAT
AGCTATCAATTTTTGGTACGAAATGTGCTTTGGACGAGATTGGATCTACA
GAGAATTTTGCGCGGGCCTACGGGAGGCATATGAAAAGGAAGAAATGGAT
GAGGTTGACCAAGAAAATGGGGTGAAAGTAGAGGCGTGCTTCGATCATGC
TTGCAGTCCGCATTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1206791..1207656-

>Gchil9056.t1 ID=Gchil9056.t1|Name=Gchil9056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00004370_pilon:1206791..1207656- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGATGCGCTTCTCGCGCACGAAGTTCACCAGAAACGCGGTTCATG
TGATTGTAGTCACGTCCCTTATTATTCTGCTCAGAACTCTAGTCTGGCCA
CAGACATGCCGCAGTTGCTTGAAGACATTGATCATTCGTTGTTTCAATTT
GCCTGTGATGCGTTCAAGAATGCTCAACCAAGCGCACAAAACATATGGAT
TGGTGATGGTCGTTCTGTATCAACGACTCATGCCGATCCGTATGAGAATA
TGTACACAGTTGTAACAGGAACAAAGATATTTGAACTACGTCCACCATGT
GACGCGGCGTTTCTTAGCAAACCGTCTTTGCAGAGAGCAAGATGGAAGGC
GGATGAGAGTTTGAAGGACGCCGACAAGAGTGGGGGACCAAAAACTGTTT
CAGATTCTGAAAATGCGCTTCGGCCCGTGACTCAATTTGATGGATGGAAG
CTAATAAAGGAAGAGGGGGAGACTGGTTGGATCGATGAAGCCGAAATAGA
TGAAAAACATTCAGACAGTCTAGAAATTCGCTTATATGCTGGTGACGTGT
TGTACATTCCCGCTTTATGGTATCACCGAGTTTCTCAAGAAGGTATAACG
ATAGCTATCAATTTTTGGTACGAAATGTGCTTTGGACGAGATTGGATCTA
CAGAGAATTTTGCGCGGGCCTACGGGAGGCATATGAAAAGGAAGAAATGG
ATGAGGTTGACCAAGAAAATGGGGTGAAAGTAGAGGCGTGCTTCGATCAT
GCTTGCAGTCCGCATTAA
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