Gchil9049.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9049.t1
Unique NameGchil9049.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1185850..1187466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue2.14e-37
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9049Gchil9049Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1185850..1187466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1Gchil9049.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1185850..1187466 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1.stop1Gchil9049.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1185850..1185852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1.CDS1Gchil9049.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1185850..1186518 -
Gchil9049.t1.CDS2Gchil9049.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1187086..1187466 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1.exon1Gchil9049.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1185850..1186518 -
Gchil9049.t1.exon2Gchil9049.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1187086..1187466 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1.intron1Gchil9049.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1186519..1187085 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9049.t1.start1Gchil9049.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1187464..1187466 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9049.t1 ID=Gchil9049.t1|Name=Gchil9049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=350bp
MNGARVARSSHEEALSLVRRIPTVKSAWVYARPVGNLRWRAAKRCWAELR
GNTLLLHVVGEQSSRANPEHLARRTASENVMMINLKDSRIRSDTKKNRIR
IKRSSGENSIELKLKDTAETKKWHSALPVNMTKTFCGTREYIAPEMLNGS
EYGQSVDLWAFGILLYEILCGRTPFYSRNREEVYTKIENGPLRFPRNLSA
EVISLIRGLLDRNPNTRLGLGPQGISEIKQHDFFHDMDWEALFQKEDHPD
NIVVERNPIGIVEEHSSSSKSDPEKLKSSKNPVNEIDMAGKEADMLLEDE
SQEEKKRPDVFALFVSTKKKAANIAGYSYAAVPQPPPNAAVHESSQLLR*
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spliced messenger RNA

>Gchil9049.t1 ID=Gchil9049.t1|Name=Gchil9049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00004370_pilon:1185850..1187466- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCGCTCGCGTTGCGCGCAGCTCCCATGAGGAGGCTCTCAGTCT
TGTTCGCCGCATCCCCACCGTCAAGTCCGCCTGGGTCTATGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGTTGTTGGGCCGAACTGCGC
GGTAACACCCTCCTGCTGCACGTCGTCGGCGAGCAAAGTTCCCGCGCCAA
CCCCGAGCATCTTGCGCGTCGCACCGCCTCCGAGAACGTCATGATGATCA
ACCTCAAGGACTCGCGCATCCGAAGCGATACCAAGAAAAACCGCATTCGC
ATCAAGCGTTCCTCAGGCGAAAACTCCATCGAGCTCAAGCTCAAGGACAC
CGCCGAGACAAAAAAATGGCACTCGGCGCTTCCTGTTAACATGACGAAGA
CCTTCTGTGGCACTAGAGAGTACATCGCTCCAGAAATGCTGAATGGTAGC
GAATATGGCCAGTCGGTTGATTTATGGGCATTTGGCATTTTGCTGTATGA
GATTTTGTGTGGCAGAACTCCCTTTTACTCCCGCAATCGTGAGGAGGTGT
ACACCAAGATTGAAAATGGGCCTTTGCGCTTTCCGAGGAACTTGTCTGCA
GAGGTTATCTCGCTAATACGCGGTTTGTTGGATCGCAATCCTAACACGCG
CTTAGGTCTGGGTCCTCAAGGTATTAGCGAAATCAAGCAACATGATTTTT
TCCACGACATGGATTGGGAGGCGCTTTTCCAGAAGGAGGATCATCCGGAC
AATATTGTTGTAGAAAGAAATCCTATTGGTATTGTCGAGGAACACAGCTC
TTCCTCTAAGTCGGATCCGGAAAAGCTCAAGTCATCCAAGAACCCTGTCA
ACGAAATTGACATGGCCGGGAAGGAAGCCGATATGTTGCTTGAAGACGAA
TCACAGGAAGAGAAGAAGCGACCAGATGTGTTTGCTTTGTTTGTCTCTAC
AAAGAAAAAGGCTGCAAATATCGCCGGCTATTCGTATGCTGCGGTGCCTC
AACCTCCTCCAAACGCAGCTGTTCACGAAAGCTCACAATTGTTACGGTAG
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protein sequence of Gchil9049.t1

>Gchil9049.t1 ID=Gchil9049.t1|Name=Gchil9049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=350bp
MNGARVARSSHEEALSLVRRIPTVKSAWVYARPVGNLRWRAAKRCWAELR
GNTLLLHVVGEQSSRANPEHLARRTASENVMMINLKDSRIRSDTKKNRIR
IKRSSGENSIELKLKDTAETKKWHSALPVNMTKTFCGTREYIAPEMLNGS
EYGQSVDLWAFGILLYEILCGRTPFYSRNREEVYTKIENGPLRFPRNLSA
EVISLIRGLLDRNPNTRLGLGPQGISEIKQHDFFHDMDWEALFQKEDHPD
NIVVERNPIGIVEEHSSSSKSDPEKLKSSKNPVNEIDMAGKEADMLLEDE
SQEEKKRPDVFALFVSTKKKAANIAGYSYAAVPQPPPNAAVHESSQLLR*
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mRNA from alignment at tig00004370_pilon:1185850..1187466-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9049.t1 ID=Gchil9049.t1|Name=Gchil9049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00004370_pilon:1185850..1187466- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGCGCTCGCGTTGCGCGCAGCTCCCATGAGGAGGCTCTCAGTCT
TGTTCGCCGCATCCCCACCGTCAAGTCCGCCTGGGTCTATGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGTTGTTGGGCCGAACTGCGC
GGTAACACCCTCCTGCTGCACGTCGTCGGCGAGCAAAGTTCCCGCGCCAA
CCCCGAGCATCTTGCGCGTCGCACCGCCTCCGAGAACGTCATGATGATCA
ACCTCAAGGACTCGCGCATCCGAAGCGATACCAAGAAAAACCGCATTCGC
ATCAAGCGTTCCTCAGGCGAAAACTCCATCGAGCTCAAGCTCAAGGACAC
CGCCGAGACAAAAAAATGGCACTCGGCGCTTGTACGTGCTGCCACGCATC
GCGCCACCTCCCTCAACGACTTTGAGATTTTGTCCCAGGTGGGCAAGGGC
GCTAGCGGCCGTGTCTTTTTGGTGCGCGATAGGCTCACCGCCGAGCACCT
CGCTCTCAAGGTCATTGAGAAGAGTTTTGTATACGAAAACGACGACGCCT
ATCGTCACGCTCTTGATGAGCGTCTTGTGTTGGAGATGGCATGTGACCAT
CCATTCATTCTCAACCTCCGCTACGCCTTTCAAACCTCCAAGCGTCTCTA
CCTCGTCACTGAATTTTGCGACGGCGGCGACTTGTTCGACTACCTCAAGA
GACGCGGAAAGCCCTTCAAAGAGCCTGAAGGCCGCCGAATAGCCGCCGAA
ATCTTGCTCGCTCTGGAGTACATTCACAGCCTCGGCGTCGTGTACCGGGA
CCTCAAGCTTGAAAACGTTTTGCTTGACTTGGACGGCCACATTCGCATTG
CCGATTTTGGCTTGTCAAAGCTTTTGGGCAAGCGAAGGCACCACTCGCGG
AGACCACCACCTATTCCCTCACCCAATCTACGAATTGCGCCACCAAAGCC
TGTTAACATGACGAAGACCTTCTGTGGCACTAGAGAGTACATCGCTCCAG
AAATGCTGAATGGTAGCGAATATGGCCAGTCGGTTGATTTATGGGCATTT
GGCATTTTGCTGTATGAGATTTTGTGTGGCAGAACTCCCTTTTACTCCCG
CAATCGTGAGGAGGTGTACACCAAGATTGAAAATGGGCCTTTGCGCTTTC
CGAGGAACTTGTCTGCAGAGGTTATCTCGCTAATACGCGGTTTGTTGGAT
CGCAATCCTAACACGCGCTTAGGTCTGGGTCCTCAAGGTATTAGCGAAAT
CAAGCAACATGATTTTTTCCACGACATGGATTGGGAGGCGCTTTTCCAGA
AGGAGGATCATCCGGACAATATTGTTGTAGAAAGAAATCCTATTGGTATT
GTCGAGGAACACAGCTCTTCCTCTAAGTCGGATCCGGAAAAGCTCAAGTC
ATCCAAGAACCCTGTCAACGAAATTGACATGGCCGGGAAGGAAGCCGATA
TGTTGCTTGAAGACGAATCACAGGAAGAGAAGAAGCGACCAGATGTGTTT
GCTTTGTTTGTCTCTACAAAGAAAAAGGCTGCAAATATCGCCGGCTATTC
GTATGCTGCGGTGCCTCAACCTCCTCCAAACGCAGCTGTTCACGAAAGCT
CACAATTGTTACGGTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:1185850..1187466-

>Gchil9049.t1 ID=Gchil9049.t1|Name=Gchil9049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00004370_pilon:1185850..1187466- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGCGCTCGCGTTGCGCGCAGCTCCCATGAGGAGGCTCTCAGTCT
TGTTCGCCGCATCCCCACCGTCAAGTCCGCCTGGGTCTATGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGTTGTTGGGCCGAACTGCGC
GGTAACACCCTCCTGCTGCACGTCGTCGGCGAGCAAAGTTCCCGCGCCAA
CCCCGAGCATCTTGCGCGTCGCACCGCCTCCGAGAACGTCATGATGATCA
ACCTCAAGGACTCGCGCATCCGAAGCGATACCAAGAAAAACCGCATTCGC
ATCAAGCGTTCCTCAGGCGAAAACTCCATCGAGCTCAAGCTCAAGGACAC
CGCCGAGACAAAAAAATGGCACTCGGCGCTTCCTGTTAACATGACGAAGA
CCTTCTGTGGCACTAGAGAGTACATCGCTCCAGAAATGCTGAATGGTAGC
GAATATGGCCAGTCGGTTGATTTATGGGCATTTGGCATTTTGCTGTATGA
GATTTTGTGTGGCAGAACTCCCTTTTACTCCCGCAATCGTGAGGAGGTGT
ACACCAAGATTGAAAATGGGCCTTTGCGCTTTCCGAGGAACTTGTCTGCA
GAGGTTATCTCGCTAATACGCGGTTTGTTGGATCGCAATCCTAACACGCG
CTTAGGTCTGGGTCCTCAAGGTATTAGCGAAATCAAGCAACATGATTTTT
TCCACGACATGGATTGGGAGGCGCTTTTCCAGAAGGAGGATCATCCGGAC
AATATTGTTGTAGAAAGAAATCCTATTGGTATTGTCGAGGAACACAGCTC
TTCCTCTAAGTCGGATCCGGAAAAGCTCAAGTCATCCAAGAACCCTGTCA
ACGAAATTGACATGGCCGGGAAGGAAGCCGATATGTTGCTTGAAGACGAA
TCACAGGAAGAGAAGAAGCGACCAGATGTGTTTGCTTTGTTTGTCTCTAC
AAAGAAAAAGGCTGCAAATATCGCCGGCTATTCGTATGCTGCGGTGCCTC
AACCTCCTCCAAACGCAGCTGTTCACGAAAGCTCACAATTGTTACGGTAG
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