Gchil2161.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2161.t1
Unique NameGchil2161.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length709
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:94468..96594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2161Gchil2161Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 94468..96594 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2161.t1.stop1Gchil2161.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 94468..94470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2161.t1.CDS1Gchil2161.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 94468..96594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2161.t1.exon1Gchil2161.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 94468..96594 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2161.t1.start1Gchil2161.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 96592..96594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2161.t1Gchil2161.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 94468..96594 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2161.t1 ID=Gchil2161.t1|Name=Gchil2161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=709bp
MSEKPPVSNAPSSSNTAVTASVLSPTALTPLPLTAVVCGAHTELGKLVLR
ELLRCDAVARVHALAEFDPRSHIRLTSAQTAKLVLHVESLEFLERTIASH
IPQCQLAFCTLGAKRKPPNMDAYKFHNYNVSIPKRFVQEMFRINADRISI
LCTNKGSSRMSSSTLQRNSPAAADYARYLQVERRESLTQHKIPGVSVFKV
SLMLTDMKDPFGVRGTAISPLEQIREKVVFKLGFGASNAVHVRDVAKAMV
ADALEKLDLQNEQPDLALIFKSHQTAFDELRPSDIIITANEAREAQRSRI
IQIRTSRRMSSNVSGYARYQSGEQVPVEKFSPSDLSQSAVPSALPSATPS
AVPSIPSAAPSAAQSPLPQNHVLRIEMEGYTAPSLQPSDHHSPVPVGHSS
SNPLSQVHEKNASSPAQSITPQHRPLSERRQEPPSNQNTFQSPPIVAQGT
QDPLTSPIHYIPNRSSARNVNTASSPEQPGPSLPVTSSVDALGHQLSRRL
TVVHSNEQLPGASVSPRRLSRRKSAKEIRSQNTQTTELLRRKSTSGLSRN
EKALRTSKSPNSKSRSSRSPPQHPFESDGAKSPTAKYSDAQSSRGRPSRS
SQRRNTSGRSVPTASFHSGHDSGEGGRRRSEVDSLRYTKATHGRRRSSLP
TASAILSQISLLASRILEATDRPSVKRYRQAYDPNYLPRGDPRRNHGKDR
RAVNATMI*
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spliced messenger RNA

>Gchil2161.t1 ID=Gchil2161.t1|Name=Gchil2161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000228_pilon:94468..96594- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAGAAGCCTCCTGTGAGCAATGCGCCTTCGTCTTCAAACACTGC
CGTTACCGCTTCCGTCCTCAGTCCAACCGCACTCACTCCTTTGCCGCTCA
CTGCTGTGGTGTGCGGAGCGCACACAGAGCTTGGTAAGCTCGTGCTTCGT
GAACTGCTTCGATGTGACGCCGTTGCTCGCGTCCACGCGCTGGCTGAATT
TGATCCTCGTTCCCACATTCGACTCACTTCAGCTCAAACTGCCAAGCTTG
TGCTTCACGTAGAGTCTCTGGAATTTCTTGAGCGTACCATCGCATCTCAC
ATTCCTCAATGCCAGCTGGCGTTTTGTACACTTGGTGCCAAGCGAAAACC
ACCCAACATGGATGCGTACAAGTTCCACAACTACAACGTTTCCATTCCAA
AGCGCTTTGTCCAAGAAATGTTTCGCATCAACGCTGATCGCATCAGTATA
CTTTGTACCAACAAGGGTTCCTCGCGTATGTCCAGTTCTACTCTACAACG
AAACAGTCCTGCTGCCGCTGATTATGCCCGCTACTTGCAAGTAGAACGAC
GAGAATCTCTGACGCAGCACAAAATCCCCGGCGTGTCTGTTTTCAAAGTT
TCCCTCATGTTAACTGATATGAAAGACCCATTTGGAGTGCGCGGAACTGC
CATATCTCCACTTGAACAAATTCGCGAAAAAGTAGTGTTCAAACTCGGTT
TTGGCGCTTCCAATGCTGTTCATGTGCGGGACGTTGCCAAAGCAATGGTG
GCAGATGCACTTGAGAAGCTTGATTTACAGAATGAACAACCGGATCTCGC
GCTTATCTTCAAGTCTCATCAAACTGCCTTTGACGAACTTCGTCCAAGTG
ACATCATCATCACTGCCAATGAAGCGCGAGAAGCACAGCGTTCTCGCATT
ATTCAAATCCGGACTAGTCGTCGCATGTCATCGAATGTATCAGGGTATGC
ACGATATCAATCTGGCGAGCAAGTCCCCGTCGAGAAGTTTTCTCCTTCCG
ACCTTTCGCAATCTGCAGTACCGTCTGCCTTACCTTCGGCCACACCATCC
GCTGTTCCTTCGATCCCATCGGCCGCTCCATCGGCCGCCCAGTCCCCCCT
GCCTCAAAACCATGTGCTTCGGATTGAAATGGAGGGATATACCGCTCCTT
CCCTACAACCGAGCGACCATCACTCTCCTGTACCGGTAGGTCACTCATCA
TCAAATCCATTGTCACAAGTACATGAGAAGAATGCTTCATCACCTGCGCA
ATCTATCACCCCTCAGCATCGACCACTTTCAGAAAGACGACAAGAGCCCC
CATCGAATCAGAATACATTTCAATCACCGCCAATAGTAGCACAAGGTACT
CAGGATCCACTGACCTCCCCGATTCATTATATTCCCAACCGTTCTTCGGC
TCGAAATGTTAACACGGCAAGCTCTCCCGAACAGCCTGGGCCATCTCTCC
CAGTCACTAGCTCAGTCGATGCCCTTGGCCATCAACTAAGTCGGCGTTTG
ACGGTTGTCCACAGTAATGAACAACTACCAGGCGCATCGGTCTCACCCCG
GCGACTATCCCGAAGGAAAAGTGCGAAGGAGATTCGCTCGCAAAATACTC
AGACTACTGAGCTGCTTCGAAGGAAATCCACCTCAGGTCTCTCTCGAAAC
GAAAAAGCGTTAAGAACTTCGAAGAGCCCCAACAGCAAGTCTCGCTCGTC
GCGGTCTCCGCCACAACATCCTTTTGAGAGTGACGGCGCCAAATCCCCAA
CAGCGAAATATTCAGATGCTCAGTCTTCCCGTGGCAGACCTTCGAGATCC
TCACAACGAAGAAACACATCAGGTCGGTCCGTCCCAACTGCATCTTTCCA
CTCTGGTCATGACTCTGGGGAAGGGGGTCGACGACGAAGCGAGGTGGATA
GCCTCAGGTACACCAAGGCGACGCATGGGAGACGTCGCAGTTCACTTCCC
ACAGCTTCCGCTATTCTTTCTCAGATTTCATTACTTGCCAGTAGAATTCT
CGAAGCCACAGATAGACCTTCAGTCAAGCGTTATCGACAAGCGTACGATC
CGAACTATTTGCCACGAGGTGACCCCAGACGAAACCACGGCAAAGATAGG
CGCGCAGTGAACGCAACAATGATTTGA
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protein sequence of Gchil2161.t1

>Gchil2161.t1 ID=Gchil2161.t1|Name=Gchil2161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=709bp
MSEKPPVSNAPSSSNTAVTASVLSPTALTPLPLTAVVCGAHTELGKLVLR
ELLRCDAVARVHALAEFDPRSHIRLTSAQTAKLVLHVESLEFLERTIASH
IPQCQLAFCTLGAKRKPPNMDAYKFHNYNVSIPKRFVQEMFRINADRISI
LCTNKGSSRMSSSTLQRNSPAAADYARYLQVERRESLTQHKIPGVSVFKV
SLMLTDMKDPFGVRGTAISPLEQIREKVVFKLGFGASNAVHVRDVAKAMV
ADALEKLDLQNEQPDLALIFKSHQTAFDELRPSDIIITANEAREAQRSRI
IQIRTSRRMSSNVSGYARYQSGEQVPVEKFSPSDLSQSAVPSALPSATPS
AVPSIPSAAPSAAQSPLPQNHVLRIEMEGYTAPSLQPSDHHSPVPVGHSS
SNPLSQVHEKNASSPAQSITPQHRPLSERRQEPPSNQNTFQSPPIVAQGT
QDPLTSPIHYIPNRSSARNVNTASSPEQPGPSLPVTSSVDALGHQLSRRL
TVVHSNEQLPGASVSPRRLSRRKSAKEIRSQNTQTTELLRRKSTSGLSRN
EKALRTSKSPNSKSRSSRSPPQHPFESDGAKSPTAKYSDAQSSRGRPSRS
SQRRNTSGRSVPTASFHSGHDSGEGGRRRSEVDSLRYTKATHGRRRSSLP
TASAILSQISLLASRILEATDRPSVKRYRQAYDPNYLPRGDPRRNHGKDR
RAVNATMI*
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mRNA from alignment at tig00000228_pilon:94468..96594-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2161.t1 ID=Gchil2161.t1|Name=Gchil2161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000228_pilon:94468..96594- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGAGAAGCCTCCTGTGAGCAATGCGCCTTCGTCTTCAAACACTGC
CGTTACCGCTTCCGTCCTCAGTCCAACCGCACTCACTCCTTTGCCGCTCA
CTGCTGTGGTGTGCGGAGCGCACACAGAGCTTGGTAAGCTCGTGCTTCGT
GAACTGCTTCGATGTGACGCCGTTGCTCGCGTCCACGCGCTGGCTGAATT
TGATCCTCGTTCCCACATTCGACTCACTTCAGCTCAAACTGCCAAGCTTG
TGCTTCACGTAGAGTCTCTGGAATTTCTTGAGCGTACCATCGCATCTCAC
ATTCCTCAATGCCAGCTGGCGTTTTGTACACTTGGTGCCAAGCGAAAACC
ACCCAACATGGATGCGTACAAGTTCCACAACTACAACGTTTCCATTCCAA
AGCGCTTTGTCCAAGAAATGTTTCGCATCAACGCTGATCGCATCAGTATA
CTTTGTACCAACAAGGGTTCCTCGCGTATGTCCAGTTCTACTCTACAACG
AAACAGTCCTGCTGCCGCTGATTATGCCCGCTACTTGCAAGTAGAACGAC
GAGAATCTCTGACGCAGCACAAAATCCCCGGCGTGTCTGTTTTCAAAGTT
TCCCTCATGTTAACTGATATGAAAGACCCATTTGGAGTGCGCGGAACTGC
CATATCTCCACTTGAACAAATTCGCGAAAAAGTAGTGTTCAAACTCGGTT
TTGGCGCTTCCAATGCTGTTCATGTGCGGGACGTTGCCAAAGCAATGGTG
GCAGATGCACTTGAGAAGCTTGATTTACAGAATGAACAACCGGATCTCGC
GCTTATCTTCAAGTCTCATCAAACTGCCTTTGACGAACTTCGTCCAAGTG
ACATCATCATCACTGCCAATGAAGCGCGAGAAGCACAGCGTTCTCGCATT
ATTCAAATCCGGACTAGTCGTCGCATGTCATCGAATGTATCAGGGTATGC
ACGATATCAATCTGGCGAGCAAGTCCCCGTCGAGAAGTTTTCTCCTTCCG
ACCTTTCGCAATCTGCAGTACCGTCTGCCTTACCTTCGGCCACACCATCC
GCTGTTCCTTCGATCCCATCGGCCGCTCCATCGGCCGCCCAGTCCCCCCT
GCCTCAAAACCATGTGCTTCGGATTGAAATGGAGGGATATACCGCTCCTT
CCCTACAACCGAGCGACCATCACTCTCCTGTACCGGTAGGTCACTCATCA
TCAAATCCATTGTCACAAGTACATGAGAAGAATGCTTCATCACCTGCGCA
ATCTATCACCCCTCAGCATCGACCACTTTCAGAAAGACGACAAGAGCCCC
CATCGAATCAGAATACATTTCAATCACCGCCAATAGTAGCACAAGGTACT
CAGGATCCACTGACCTCCCCGATTCATTATATTCCCAACCGTTCTTCGGC
TCGAAATGTTAACACGGCAAGCTCTCCCGAACAGCCTGGGCCATCTCTCC
CAGTCACTAGCTCAGTCGATGCCCTTGGCCATCAACTAAGTCGGCGTTTG
ACGGTTGTCCACAGTAATGAACAACTACCAGGCGCATCGGTCTCACCCCG
GCGACTATCCCGAAGGAAAAGTGCGAAGGAGATTCGCTCGCAAAATACTC
AGACTACTGAGCTGCTTCGAAGGAAATCCACCTCAGGTCTCTCTCGAAAC
GAAAAAGCGTTAAGAACTTCGAAGAGCCCCAACAGCAAGTCTCGCTCGTC
GCGGTCTCCGCCACAACATCCTTTTGAGAGTGACGGCGCCAAATCCCCAA
CAGCGAAATATTCAGATGCTCAGTCTTCCCGTGGCAGACCTTCGAGATCC
TCACAACGAAGAAACACATCAGGTCGGTCCGTCCCAACTGCATCTTTCCA
CTCTGGTCATGACTCTGGGGAAGGGGGTCGACGACGAAGCGAGGTGGATA
GCCTCAGGTACACCAAGGCGACGCATGGGAGACGTCGCAGTTCACTTCCC
ACAGCTTCCGCTATTCTTTCTCAGATTTCATTACTTGCCAGTAGAATTCT
CGAAGCCACAGATAGACCTTCAGTCAAGCGTTATCGACAAGCGTACGATC
CGAACTATTTGCCACGAGGTGACCCCAGACGAAACCACGGCAAAGATAGG
CGCGCAGTGAACGCAACAATGATTTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:94468..96594-

>Gchil2161.t1 ID=Gchil2161.t1|Name=Gchil2161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00000228_pilon:94468..96594- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGAGAAGCCTCCTGTGAGCAATGCGCCTTCGTCTTCAAACACTGC
CGTTACCGCTTCCGTCCTCAGTCCAACCGCACTCACTCCTTTGCCGCTCA
CTGCTGTGGTGTGCGGAGCGCACACAGAGCTTGGTAAGCTCGTGCTTCGT
GAACTGCTTCGATGTGACGCCGTTGCTCGCGTCCACGCGCTGGCTGAATT
TGATCCTCGTTCCCACATTCGACTCACTTCAGCTCAAACTGCCAAGCTTG
TGCTTCACGTAGAGTCTCTGGAATTTCTTGAGCGTACCATCGCATCTCAC
ATTCCTCAATGCCAGCTGGCGTTTTGTACACTTGGTGCCAAGCGAAAACC
ACCCAACATGGATGCGTACAAGTTCCACAACTACAACGTTTCCATTCCAA
AGCGCTTTGTCCAAGAAATGTTTCGCATCAACGCTGATCGCATCAGTATA
CTTTGTACCAACAAGGGTTCCTCGCGTATGTCCAGTTCTACTCTACAACG
AAACAGTCCTGCTGCCGCTGATTATGCCCGCTACTTGCAAGTAGAACGAC
GAGAATCTCTGACGCAGCACAAAATCCCCGGCGTGTCTGTTTTCAAAGTT
TCCCTCATGTTAACTGATATGAAAGACCCATTTGGAGTGCGCGGAACTGC
CATATCTCCACTTGAACAAATTCGCGAAAAAGTAGTGTTCAAACTCGGTT
TTGGCGCTTCCAATGCTGTTCATGTGCGGGACGTTGCCAAAGCAATGGTG
GCAGATGCACTTGAGAAGCTTGATTTACAGAATGAACAACCGGATCTCGC
GCTTATCTTCAAGTCTCATCAAACTGCCTTTGACGAACTTCGTCCAAGTG
ACATCATCATCACTGCCAATGAAGCGCGAGAAGCACAGCGTTCTCGCATT
ATTCAAATCCGGACTAGTCGTCGCATGTCATCGAATGTATCAGGGTATGC
ACGATATCAATCTGGCGAGCAAGTCCCCGTCGAGAAGTTTTCTCCTTCCG
ACCTTTCGCAATCTGCAGTACCGTCTGCCTTACCTTCGGCCACACCATCC
GCTGTTCCTTCGATCCCATCGGCCGCTCCATCGGCCGCCCAGTCCCCCCT
GCCTCAAAACCATGTGCTTCGGATTGAAATGGAGGGATATACCGCTCCTT
CCCTACAACCGAGCGACCATCACTCTCCTGTACCGGTAGGTCACTCATCA
TCAAATCCATTGTCACAAGTACATGAGAAGAATGCTTCATCACCTGCGCA
ATCTATCACCCCTCAGCATCGACCACTTTCAGAAAGACGACAAGAGCCCC
CATCGAATCAGAATACATTTCAATCACCGCCAATAGTAGCACAAGGTACT
CAGGATCCACTGACCTCCCCGATTCATTATATTCCCAACCGTTCTTCGGC
TCGAAATGTTAACACGGCAAGCTCTCCCGAACAGCCTGGGCCATCTCTCC
CAGTCACTAGCTCAGTCGATGCCCTTGGCCATCAACTAAGTCGGCGTTTG
ACGGTTGTCCACAGTAATGAACAACTACCAGGCGCATCGGTCTCACCCCG
GCGACTATCCCGAAGGAAAAGTGCGAAGGAGATTCGCTCGCAAAATACTC
AGACTACTGAGCTGCTTCGAAGGAAATCCACCTCAGGTCTCTCTCGAAAC
GAAAAAGCGTTAAGAACTTCGAAGAGCCCCAACAGCAAGTCTCGCTCGTC
GCGGTCTCCGCCACAACATCCTTTTGAGAGTGACGGCGCCAAATCCCCAA
CAGCGAAATATTCAGATGCTCAGTCTTCCCGTGGCAGACCTTCGAGATCC
TCACAACGAAGAAACACATCAGGTCGGTCCGTCCCAACTGCATCTTTCCA
CTCTGGTCATGACTCTGGGGAAGGGGGTCGACGACGAAGCGAGGTGGATA
GCCTCAGGTACACCAAGGCGACGCATGGGAGACGTCGCAGTTCACTTCCC
ACAGCTTCCGCTATTCTTTCTCAGATTTCATTACTTGCCAGTAGAATTCT
CGAAGCCACAGATAGACCTTCAGTCAAGCGTTATCGACAAGCGTACGATC
CGAACTATTTGCCACGAGGTGACCCCAGACGAAACCACGGCAAAGATAGG
CGCGCAGTGAACGCAACAATGATTTGA
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