Gchil7406.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7406.t1
Unique NameGchil7406.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length542
Homology
BLAST of Gchil7406.t1 vs. uniprot
Match: A0A2V3ID49_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID49_9FLOR)

HSP 1 Score: 527 bits (1357), Expect = 5.790e-180
Identity = 312/564 (55.32%), Postives = 397/564 (70.39%), Query Frame = 0
Query:    1 MLNINESD-QHS---IASPSSDGSELFPRLWRYFLRHQHIRDWLMRKPPYCAPQVNPASVKEGVGFCCNFSTPEHWSDMGSCFEMGEMFIPDHQFRNFMCGSVIAASPFHKHLICALGSAAARHSSILASYKTQVRRMVVDMRSAHAINLLEFSWMEDGMLIVMSKVLVPPISGSRRTTSGCSGAFALFNNTAPGSNLPTAPISFVSFVEAPLCPSCTAQGSLGCHCPAAVHTRDQNSSSTWPLVATDSTCNPSSTTMQNLRMKLASIRRISHVKVTAHIVTPEIQYRASGMPIRSYKLGPSRFIIKAADFRPSTPFESDTLRQVADKWRLLRIGSLRILSFLAQDQKASLDKDDVLLRSKSGSLLSIPS-------TDLEQCTSENTLPSTGMFEELIRTDQYSSSFS-------EDDFQSSTCKSCGRSNESVQDGSDLSICAC-MLSIGEQTASSCESYETSVD----CEVKRTLTTKSSNRPKCDLCGKEFSQQGSLNRHMRNIHEEKKIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKCERIETKVYRRPMERLKN 541
            MLN+ E++  H    + +  SDGSELFP LWR+FLRHQ +RDWLMR+PPY    ++PA V +GV FCCNF TP+ W+DM S FEMGEMFIPDH++  FMCGS++AA+PFHKHLICALG AAAR   +L SY+T+VRRMVVDM S+ +IN+ EFSWMEDGMLIV +K+LVPP  G+ + T+GC+GAFALF+N APG +LP AP SFVSFVEAP CP+C  QG+LGC CP +    +  SS+ WP         P+  TM N+R KLA I+R++HVKVTAH+VTP+   R +G+P R+YKLGPSRF +KA  FRPSTP E+DTLRQVAD+WRLLR  SLR LS    +    +++D +  R     L ++P+        D + CTS  ++P+     E+++  + +S          E   + + C SCGRS E + D +DLS+C+C +LS+  +  +S ES   S+D    CE   ++ +K   RP C LCGK FSQQGSLNRH++NIHEEK   XXXXXXXXXXXXXXXXXXXXXXXXXXXX KKCERIETK  R P+ER+KN
Sbjct:    1 MLNLTEANVSHPAPIVPNYMSDGSELFPYLWRHFLRHQPVRDWLMRRPPYHRTAISPAHVAQGVAFCCNFETPDVWADMDSSFEMGEMFIPDHKYHQFMCGSIVAATPFHKHLICALGQAAARDYRVLPSYRTRVRRMVVDMVSSRSINMFEFSWMEDGMLIVTAKILVPPPPGTLKATAGCTGAFALFDNVAPGGDLPAAPRSFVSFVEAPRCPTCYQQGALGCCCPNSPSLLEAESSAIWPPTFETDKHEPTVHTMTNVRAKLACIQRVAHVKVTAHVVTPQTLLRGNGLPWRTYKLGPSRFTVKAVMFRPSTPLEADTLRQVADRWRLLRSASLRYLSMRTDEDGVEMEQDPLEERPMID-LTAVPTKQFSHEPNDPDLCTSMLSVPACTFVTEMLKGARAASPMDLVPTYPPEQISEVNACSSCGRSREPLLDENDLSVCSCDLLSVLSERTASLESLSPSLDDSKNCE---SVNSKCLKRPTCSLCGKTFSQQGSLNRHLKNIHEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKKCERIETKSLRVPVERMKN 560          
BLAST of Gchil7406.t1 vs. uniprot
Match: R7QBY3_CHOCR (C2H2-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBY3_CHOCR)

HSP 1 Score: 387 bits (995), Expect = 3.580e-121
Identity = 221/491 (45.01%), Postives = 289/491 (58.86%), Query Frame = 0
Query:   17 SDGSELFPRLWRYFLRHQHIRDWLMRKPPYCAPQVNPASVKEGVGFCCNFSTPEHWSDMGSCFEMGEMFIPDHQFRNFMCGSVIAASPFHKHLICALGSAAARHSSILASYKTQVRRMVVDMRSAHAINLLEFSWMEDGMLIVMSKVLVPPISGSRRTTSGCSGAFALFNNTAPGSNLPTAPISFVSFVEAPLCPSCTAQGSLGCHCPAAVHTR-----DQNSSSTWPLVATDSTCNPSSTTMQNLRMKLASIRRISHVKVTAHIVTPEIQYRASGMPIRSYKLGPSRFIIKAADFRPSTPFESDTLRQVADKWRLLRIGSLRILSFLAQDQKASLDKDDVLLRSKSGSLLSIPSTDLE------QCTSENTLPSTGMFEELIRTD-QYSSSFS-EDDFQSSTCKSCGRSNESVQDGSDLSICACMLSIGEQTASSCESYETSVDCE-VKRTLTTKS--SNRPKCDLCGKEFSQQGSLNRHMRNIHEEKKI 491
            SDGSELFP LWRYFL H  +RDWLMR  P+C   V+P  V +G+ FCCNFS P  W DM   F+MGEMF+P H + +FMCG+V+AA+ +HKHLICALG AAAR + +L SY+T VRRMVVDM S+ +IN++EFSWM DG LIV  K+LVPP        +GC+GAFALF +  P    P  P S VSF+E P CP C A GSLGC+C      R     D+ SS+ WP             T  N+R +L  I+ ISHVKVTAH+VT +   +  G P R+YKLGPSRF+I+A  FRP+T +E+D+LRQVAD +RL+R GSL+    L + + A  +  +  +  +        + D        + T E   P   MF+   R   +Y +  S      SS C +C   N    DG     C+   S+G    S  ++    +    V   L+  S  + +  C LCGK FSQQGSLNRH++N+H+EKKI
Sbjct:  134 SDGSELFPFLWRYFLHHDPLRDWLMRSEPFCTTAVSPVKVAQGIAFCCNFSVPPQWEDMSESFDMGEMFVPSHAYSHFMCGTVVAATSYHKHLICALGPAAARDAHVLPSYQTNVRRMVVDMGSSRSINIIEFSWMNDGALIVTVKILVPPDPAFPVRAAGCTGAFALFTDVFPAGPTPLVPRSLVSFIEVPRCPVCIASGSLGCYCSHQALERFAQYKDERSSAVWPPRLVQDVQIAGIDTYHNIRSRLDMIQHISHVKVTAHVVTGQDVMQEMGPPARTYKLGPSRFVIRAVLFRPATGYEADSLRQVADGFRLVRSGSLKATRALQELEHARYEVAEAGVEEQFEDKPEQSTQDDPHEWKGAKITDETIAPPVEMFDLQKRHPREYETVISGRSSHVSSACLAC--ENPVPIDGIVSHTCSRARSLGFSAVSGSKAGNALLPGSLVTEELSDHSFLTKKISCPLCGKSFSQQGSLNRHLKNVHQEKKI 622          
The following BLAST results are available for this feature:
BLAST of Gchil7406.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ID49_9FLOR5.790e-18055.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBY3_CHOCR3.580e-12145.01C2H2-type domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 491..514
e-value: 0.018
score: 24.2
coord: 463..486
e-value: 2.3E-4
score: 30.5
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 464..486
e-value: 1.3E-5
score: 25.4
coord: 492..514
e-value: 0.004
score: 17.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 493..514
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 465..486
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 491..519
score: 9.473253
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 463..491
score: 13.00638
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 438..517
e-value: 1.8E-14
score: 55.5
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 464..511

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:952822..954563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7406.t1Gchil7406.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 952822..954563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7406.t1 ID=Gchil7406.t1|Name=Gchil7406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=542bp
MLNINESDQHSIASPSSDGSELFPRLWRYFLRHQHIRDWLMRKPPYCAPQ
VNPASVKEGVGFCCNFSTPEHWSDMGSCFEMGEMFIPDHQFRNFMCGSVI
AASPFHKHLICALGSAAARHSSILASYKTQVRRMVVDMRSAHAINLLEFS
WMEDGMLIVMSKVLVPPISGSRRTTSGCSGAFALFNNTAPGSNLPTAPIS
FVSFVEAPLCPSCTAQGSLGCHCPAAVHTRDQNSSSTWPLVATDSTCNPS
STTMQNLRMKLASIRRISHVKVTAHIVTPEIQYRASGMPIRSYKLGPSRF
IIKAADFRPSTPFESDTLRQVADKWRLLRIGSLRILSFLAQDQKASLDKD
DVLLRSKSGSLLSIPSTDLEQCTSENTLPSTGMFEELIRTDQYSSSFSED
DFQSSTCKSCGRSNESVQDGSDLSICACMLSIGEQTASSCESYETSVDCE
VKRTLTTKSSNRPKCDLCGKEFSQQGSLNRHMRNIHEEKKIPCQYCSMSF
GQMFDLRRHQKRKHPDRNIALKKCERIETKVYRRPMERLKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf