Gchil335.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil335.t1
Unique NameGchil335.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:261539..263023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil335Gchil335Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 261539..263023 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil335.t1.start1Gchil335.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 261539..261541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil335.t1.CDS1Gchil335.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 261539..263023 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil335.t1.exon1Gchil335.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 261539..263023 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil335.t1.stop1Gchil335.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 263021..263023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil335.t1Gchil335.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 261539..263023 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil335.t1 ID=Gchil335.t1|Name=Gchil335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp
MLFLAKTLVAAFVLFAVCAQAITHLHKGPQSDEEEFVLRGFSHGSSMSTA
RPHDADFERLSDHTVRFAVDLKMDAVLWEELEDDNTMMYCMRHGDDRYAT
IELTGETLDREDYSPGSAFVIDARRWTQLCGSIPSLDGINRLDPVLFFKM
NNVTFLDSIQKIRLSLQAISGSVVAPSIRFDVLQRPLKHHTKKRYVLQDR
PLYESTSRMLEAPIGSLPGGESHSGSEVFSEFALFPGANISVSGEVEGTI
NNVRITRLFNLEVGWEQRLRANISSRLVASRTYSASNEKEVHRKPIRGAT
STGRLLFFGTYQLNASTVVDVVQQITADSGVNAFLRASHENLEAVTASFA
TNDVDADSLLPPDIGSYGTFDINFDNVIEQRVGLHGFYGARPGIVVEARL
GDISLVGMYTATLGLEASLQMKSPPFFPLPYDGRRAKGPCQECHRLEGRA
SVVGKDLQYRIFENGVLEKHKVTDRTLFEKELSTVCAFAQVCSS*
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spliced messenger RNA

>Gchil335.t1 ID=Gchil335.t1|Name=Gchil335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000212_pilon:261539..263023+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTTCTTGCCAAAACCCTAGTCGCTGCATTCGTGCTCTTTGCTGT
TTGTGCCCAAGCCATCACACATCTTCACAAAGGGCCTCAAAGTGATGAAG
AAGAATTCGTTCTGCGCGGATTTAGCCATGGATCTTCAATGTCCACCGCT
CGCCCTCACGATGCAGACTTCGAAAGACTATCCGACCACACAGTCCGCTT
TGCTGTTGATCTAAAAATGGATGCTGTTCTATGGGAAGAATTAGAAGATG
ATAATACTATGATGTACTGCATGCGACATGGAGATGATCGCTACGCTACG
ATTGAGCTCACCGGGGAGACTCTCGACCGAGAAGACTACAGCCCGGGTTC
AGCTTTTGTAATTGATGCACGACGTTGGACACAGCTTTGCGGTTCTATTC
CTTCTCTTGATGGTATTAATCGTCTCGATCCTGTACTGTTTTTTAAGATG
AACAATGTGACATTTTTGGATTCAATCCAAAAAATTCGTTTGTCTTTACA
AGCCATATCCGGGTCCGTCGTGGCGCCGTCAATTCGTTTTGATGTTCTGC
AAAGGCCTTTGAAGCATCATACCAAAAAGAGGTATGTGCTGCAGGATAGG
CCGCTGTATGAATCCACTTCCAGAATGTTGGAAGCACCCATCGGTTCTCT
TCCGGGCGGTGAATCGCACAGTGGATCAGAAGTGTTTTCAGAGTTTGCCC
TTTTCCCTGGCGCAAACATTTCAGTTTCAGGCGAAGTGGAAGGCACAATC
AACAACGTCAGAATAACCCGCTTGTTCAATTTGGAGGTAGGATGGGAGCA
ACGCCTGAGAGCTAATATTTCGTCAAGATTGGTGGCATCACGAACCTATA
GTGCATCAAACGAAAAGGAAGTCCACCGAAAACCGATTCGAGGGGCTACA
TCCACGGGGCGATTGTTATTCTTCGGTACTTACCAATTGAACGCATCTAC
TGTGGTGGATGTTGTTCAACAAATCACTGCGGACTCAGGAGTGAATGCCT
TCCTTCGTGCATCACATGAAAATCTTGAAGCAGTGACAGCAAGCTTTGCT
ACAAACGATGTCGATGCAGATAGTTTGCTTCCACCAGATATTGGAAGTTA
TGGCACCTTTGATATCAATTTTGACAATGTAATCGAACAACGGGTTGGAC
TTCATGGCTTTTATGGAGCTCGGCCAGGAATAGTCGTGGAGGCGCGGTTA
GGAGATATCAGTCTAGTTGGCATGTATACTGCTACCCTGGGTCTGGAAGC
GTCACTGCAAATGAAATCTCCACCGTTTTTCCCTCTACCGTACGACGGTA
GAAGAGCCAAAGGTCCTTGTCAAGAATGCCACAGGCTTGAAGGCAGAGCG
TCTGTTGTGGGAAAGGATCTACAATACCGCATATTTGAAAACGGTGTGCT
TGAGAAGCACAAAGTCACGGACAGAACGCTTTTCGAAAAAGAATTATCGA
CTGTCTGTGCCTTTGCTCAGGTATGTTCTTCGTAG
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protein sequence of Gchil335.t1

>Gchil335.t1 ID=Gchil335.t1|Name=Gchil335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=495bp
MLFLAKTLVAAFVLFAVCAQAITHLHKGPQSDEEEFVLRGFSHGSSMSTA
RPHDADFERLSDHTVRFAVDLKMDAVLWEELEDDNTMMYCMRHGDDRYAT
IELTGETLDREDYSPGSAFVIDARRWTQLCGSIPSLDGINRLDPVLFFKM
NNVTFLDSIQKIRLSLQAISGSVVAPSIRFDVLQRPLKHHTKKRYVLQDR
PLYESTSRMLEAPIGSLPGGESHSGSEVFSEFALFPGANISVSGEVEGTI
NNVRITRLFNLEVGWEQRLRANISSRLVASRTYSASNEKEVHRKPIRGAT
STGRLLFFGTYQLNASTVVDVVQQITADSGVNAFLRASHENLEAVTASFA
TNDVDADSLLPPDIGSYGTFDINFDNVIEQRVGLHGFYGARPGIVVEARL
GDISLVGMYTATLGLEASLQMKSPPFFPLPYDGRRAKGPCQECHRLEGRA
SVVGKDLQYRIFENGVLEKHKVTDRTLFEKELSTVCAFAQVCSS*
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mRNA from alignment at tig00000212_pilon:261539..263023+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil335.t1 ID=Gchil335.t1|Name=Gchil335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000212_pilon:261539..263023+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTTTCTTGCCAAAACCCTAGTCGCTGCATTCGTGCTCTTTGCTGT
TTGTGCCCAAGCCATCACACATCTTCACAAAGGGCCTCAAAGTGATGAAG
AAGAATTCGTTCTGCGCGGATTTAGCCATGGATCTTCAATGTCCACCGCT
CGCCCTCACGATGCAGACTTCGAAAGACTATCCGACCACACAGTCCGCTT
TGCTGTTGATCTAAAAATGGATGCTGTTCTATGGGAAGAATTAGAAGATG
ATAATACTATGATGTACTGCATGCGACATGGAGATGATCGCTACGCTACG
ATTGAGCTCACCGGGGAGACTCTCGACCGAGAAGACTACAGCCCGGGTTC
AGCTTTTGTAATTGATGCACGACGTTGGACACAGCTTTGCGGTTCTATTC
CTTCTCTTGATGGTATTAATCGTCTCGATCCTGTACTGTTTTTTAAGATG
AACAATGTGACATTTTTGGATTCAATCCAAAAAATTCGTTTGTCTTTACA
AGCCATATCCGGGTCCGTCGTGGCGCCGTCAATTCGTTTTGATGTTCTGC
AAAGGCCTTTGAAGCATCATACCAAAAAGAGGTATGTGCTGCAGGATAGG
CCGCTGTATGAATCCACTTCCAGAATGTTGGAAGCACCCATCGGTTCTCT
TCCGGGCGGTGAATCGCACAGTGGATCAGAAGTGTTTTCAGAGTTTGCCC
TTTTCCCTGGCGCAAACATTTCAGTTTCAGGCGAAGTGGAAGGCACAATC
AACAACGTCAGAATAACCCGCTTGTTCAATTTGGAGGTAGGATGGGAGCA
ACGCCTGAGAGCTAATATTTCGTCAAGATTGGTGGCATCACGAACCTATA
GTGCATCAAACGAAAAGGAAGTCCACCGAAAACCGATTCGAGGGGCTACA
TCCACGGGGCGATTGTTATTCTTCGGTACTTACCAATTGAACGCATCTAC
TGTGGTGGATGTTGTTCAACAAATCACTGCGGACTCAGGAGTGAATGCCT
TCCTTCGTGCATCACATGAAAATCTTGAAGCAGTGACAGCAAGCTTTGCT
ACAAACGATGTCGATGCAGATAGTTTGCTTCCACCAGATATTGGAAGTTA
TGGCACCTTTGATATCAATTTTGACAATGTAATCGAACAACGGGTTGGAC
TTCATGGCTTTTATGGAGCTCGGCCAGGAATAGTCGTGGAGGCGCGGTTA
GGAGATATCAGTCTAGTTGGCATGTATACTGCTACCCTGGGTCTGGAAGC
GTCACTGCAAATGAAATCTCCACCGTTTTTCCCTCTACCGTACGACGGTA
GAAGAGCCAAAGGTCCTTGTCAAGAATGCCACAGGCTTGAAGGCAGAGCG
TCTGTTGTGGGAAAGGATCTACAATACCGCATATTTGAAAACGGTGTGCT
TGAGAAGCACAAAGTCACGGACAGAACGCTTTTCGAAAAAGAATTATCGA
CTGTCTGTGCCTTTGCTCAGGTATGTTCTTCGTAG
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Coding sequence (CDS) from alignment at tig00000212_pilon:261539..263023+

>Gchil335.t1 ID=Gchil335.t1|Name=Gchil335.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000212_pilon:261539..263023+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTTTTCTTGCCAAAACCCTAGTCGCTGCATTCGTGCTCTTTGCTGT
TTGTGCCCAAGCCATCACACATCTTCACAAAGGGCCTCAAAGTGATGAAG
AAGAATTCGTTCTGCGCGGATTTAGCCATGGATCTTCAATGTCCACCGCT
CGCCCTCACGATGCAGACTTCGAAAGACTATCCGACCACACAGTCCGCTT
TGCTGTTGATCTAAAAATGGATGCTGTTCTATGGGAAGAATTAGAAGATG
ATAATACTATGATGTACTGCATGCGACATGGAGATGATCGCTACGCTACG
ATTGAGCTCACCGGGGAGACTCTCGACCGAGAAGACTACAGCCCGGGTTC
AGCTTTTGTAATTGATGCACGACGTTGGACACAGCTTTGCGGTTCTATTC
CTTCTCTTGATGGTATTAATCGTCTCGATCCTGTACTGTTTTTTAAGATG
AACAATGTGACATTTTTGGATTCAATCCAAAAAATTCGTTTGTCTTTACA
AGCCATATCCGGGTCCGTCGTGGCGCCGTCAATTCGTTTTGATGTTCTGC
AAAGGCCTTTGAAGCATCATACCAAAAAGAGGTATGTGCTGCAGGATAGG
CCGCTGTATGAATCCACTTCCAGAATGTTGGAAGCACCCATCGGTTCTCT
TCCGGGCGGTGAATCGCACAGTGGATCAGAAGTGTTTTCAGAGTTTGCCC
TTTTCCCTGGCGCAAACATTTCAGTTTCAGGCGAAGTGGAAGGCACAATC
AACAACGTCAGAATAACCCGCTTGTTCAATTTGGAGGTAGGATGGGAGCA
ACGCCTGAGAGCTAATATTTCGTCAAGATTGGTGGCATCACGAACCTATA
GTGCATCAAACGAAAAGGAAGTCCACCGAAAACCGATTCGAGGGGCTACA
TCCACGGGGCGATTGTTATTCTTCGGTACTTACCAATTGAACGCATCTAC
TGTGGTGGATGTTGTTCAACAAATCACTGCGGACTCAGGAGTGAATGCCT
TCCTTCGTGCATCACATGAAAATCTTGAAGCAGTGACAGCAAGCTTTGCT
ACAAACGATGTCGATGCAGATAGTTTGCTTCCACCAGATATTGGAAGTTA
TGGCACCTTTGATATCAATTTTGACAATGTAATCGAACAACGGGTTGGAC
TTCATGGCTTTTATGGAGCTCGGCCAGGAATAGTCGTGGAGGCGCGGTTA
GGAGATATCAGTCTAGTTGGCATGTATACTGCTACCCTGGGTCTGGAAGC
GTCACTGCAAATGAAATCTCCACCGTTTTTCCCTCTACCGTACGACGGTA
GAAGAGCCAAAGGTCCTTGTCAAGAATGCCACAGGCTTGAAGGCAGAGCG
TCTGTTGTGGGAAAGGATCTACAATACCGCATATTTGAAAACGGTGTGCT
TGAGAAGCACAAAGTCACGGACAGAACGCTTTTCGAAAAAGAATTATCGA
CTGTCTGTGCCTTTGCTCAGGTATGTTCTTCGTAG
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