Gchil360.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil360.t1
Unique NameGchil360.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:617239..618405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil360Gchil360Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 617239..618405 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil360.t1.start1Gchil360.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 617239..617241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil360.t1.CDS1Gchil360.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 617239..618405 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil360.t1.exon1Gchil360.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 617239..618405 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil360.t1.stop1Gchil360.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 618403..618405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil360.t1Gchil360.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 617239..618405 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil360.t1 ID=Gchil360.t1|Name=Gchil360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MTSDPPTFERAPDFRPASSALPKLDTFHIIVVDWHNLQSPNTVTSVASRL
RLRDAFIRFLHTLFDHTHLITQPLMLLATCGHDDQHIARIVQVLEMVSSS
HVPIASVMQSLRATQQPCSPLSSSQLRQYSRSLVDQLSEWGASRSAAPHT
YIFCNPCVSVAISAALSASPSSIFSSDRSHIFPCQAPSEADGHLSEILAR
LLESTVTLTLPSDTAAGVNVALNVRPRVLTSTIEYPTALVATKRVGLQSV
REDVLHSTPLVVWPKPTTPVHVEHNASFSIVVRKLRQWDEALLCIAIGED
SQKLFVLLPSGNEIRAALLRQVAHAGTLLPVPRCVVRNTAPHAIAHEVAQ
ELALQLLPSTTFHAPSLRIGGVRKRSANAGRRVNFRRE*
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spliced messenger RNA

>Gchil360.t1 ID=Gchil360.t1|Name=Gchil360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000212_pilon:617239..618405+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCCGACCCACCAACGTTTGAACGTGCTCCAGATTTCCGTCCTGC
CTCGAGCGCGCTTCCCAAGCTTGATACATTTCATATCATCGTCGTGGATT
GGCACAATCTGCAGTCGCCCAATACCGTCACTTCTGTCGCATCCCGTCTT
CGTCTTCGCGATGCTTTCATTCGCTTCTTGCACACGCTCTTTGACCACAC
GCACCTCATCACTCAACCGCTCATGCTGCTCGCCACTTGCGGCCATGACG
ACCAACACATTGCGCGCATCGTGCAAGTGTTGGAAATGGTGTCATCCTCT
CATGTTCCCATTGCCAGCGTCATGCAATCGTTGCGCGCTACCCAACAGCC
GTGCTCGCCACTATCGTCATCGCAGCTGCGCCAATACAGTCGATCTCTTG
TTGATCAGCTTTCCGAATGGGGTGCATCCCGAAGTGCTGCCCCGCACACG
TACATCTTCTGCAACCCGTGCGTCTCTGTCGCTATTTCAGCCGCATTGTC
AGCCTCGCCATCTTCAATATTCTCATCAGATCGCAGCCATATCTTTCCGT
GTCAAGCCCCCTCGGAGGCAGATGGTCATCTGTCGGAGATTCTGGCACGA
CTGCTCGAAAGCACCGTCACGCTCACATTGCCCAGTGACACGGCCGCCGG
TGTAAATGTGGCTCTGAACGTACGGCCGCGCGTGCTTACGAGTACGATCG
AATATCCCACCGCACTTGTTGCCACGAAGCGCGTGGGCTTGCAAAGCGTT
CGGGAAGACGTGCTGCACAGCACACCCCTCGTTGTATGGCCCAAGCCGAC
GACACCTGTTCACGTCGAGCACAACGCATCGTTCAGCATCGTGGTACGAA
AGCTGCGTCAGTGGGACGAGGCGTTATTGTGCATAGCCATTGGCGAGGAT
TCGCAAAAGCTATTCGTACTACTGCCATCCGGAAACGAAATTCGCGCTGC
CCTCTTGCGACAAGTAGCGCATGCTGGGACTCTGCTACCCGTCCCACGTT
GTGTTGTACGAAATACAGCCCCACACGCTATTGCGCACGAGGTTGCGCAG
GAATTAGCGCTGCAATTGCTGCCCAGCACAACATTCCACGCACCATCGCT
GCGAATAGGCGGCGTGCGAAAACGGTCGGCCAACGCGGGCAGAAGAGTGA
ACTTTCGAAGGGAATAA
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protein sequence of Gchil360.t1

>Gchil360.t1 ID=Gchil360.t1|Name=Gchil360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MTSDPPTFERAPDFRPASSALPKLDTFHIIVVDWHNLQSPNTVTSVASRL
RLRDAFIRFLHTLFDHTHLITQPLMLLATCGHDDQHIARIVQVLEMVSSS
HVPIASVMQSLRATQQPCSPLSSSQLRQYSRSLVDQLSEWGASRSAAPHT
YIFCNPCVSVAISAALSASPSSIFSSDRSHIFPCQAPSEADGHLSEILAR
LLESTVTLTLPSDTAAGVNVALNVRPRVLTSTIEYPTALVATKRVGLQSV
REDVLHSTPLVVWPKPTTPVHVEHNASFSIVVRKLRQWDEALLCIAIGED
SQKLFVLLPSGNEIRAALLRQVAHAGTLLPVPRCVVRNTAPHAIAHEVAQ
ELALQLLPSTTFHAPSLRIGGVRKRSANAGRRVNFRRE*
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mRNA from alignment at tig00000212_pilon:617239..618405+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil360.t1 ID=Gchil360.t1|Name=Gchil360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000212_pilon:617239..618405+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCCGACCCACCAACGTTTGAACGTGCTCCAGATTTCCGTCCTGC
CTCGAGCGCGCTTCCCAAGCTTGATACATTTCATATCATCGTCGTGGATT
GGCACAATCTGCAGTCGCCCAATACCGTCACTTCTGTCGCATCCCGTCTT
CGTCTTCGCGATGCTTTCATTCGCTTCTTGCACACGCTCTTTGACCACAC
GCACCTCATCACTCAACCGCTCATGCTGCTCGCCACTTGCGGCCATGACG
ACCAACACATTGCGCGCATCGTGCAAGTGTTGGAAATGGTGTCATCCTCT
CATGTTCCCATTGCCAGCGTCATGCAATCGTTGCGCGCTACCCAACAGCC
GTGCTCGCCACTATCGTCATCGCAGCTGCGCCAATACAGTCGATCTCTTG
TTGATCAGCTTTCCGAATGGGGTGCATCCCGAAGTGCTGCCCCGCACACG
TACATCTTCTGCAACCCGTGCGTCTCTGTCGCTATTTCAGCCGCATTGTC
AGCCTCGCCATCTTCAATATTCTCATCAGATCGCAGCCATATCTTTCCGT
GTCAAGCCCCCTCGGAGGCAGATGGTCATCTGTCGGAGATTCTGGCACGA
CTGCTCGAAAGCACCGTCACGCTCACATTGCCCAGTGACACGGCCGCCGG
TGTAAATGTGGCTCTGAACGTACGGCCGCGCGTGCTTACGAGTACGATCG
AATATCCCACCGCACTTGTTGCCACGAAGCGCGTGGGCTTGCAAAGCGTT
CGGGAAGACGTGCTGCACAGCACACCCCTCGTTGTATGGCCCAAGCCGAC
GACACCTGTTCACGTCGAGCACAACGCATCGTTCAGCATCGTGGTACGAA
AGCTGCGTCAGTGGGACGAGGCGTTATTGTGCATAGCCATTGGCGAGGAT
TCGCAAAAGCTATTCGTACTACTGCCATCCGGAAACGAAATTCGCGCTGC
CCTCTTGCGACAAGTAGCGCATGCTGGGACTCTGCTACCCGTCCCACGTT
GTGTTGTACGAAATACAGCCCCACACGCTATTGCGCACGAGGTTGCGCAG
GAATTAGCGCTGCAATTGCTGCCCAGCACAACATTCCACGCACCATCGCT
GCGAATAGGCGGCGTGCGAAAACGGTCGGCCAACGCGGGCAGAAGAGTGA
ACTTTCGAAGGGAATAA
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Coding sequence (CDS) from alignment at tig00000212_pilon:617239..618405+

>Gchil360.t1 ID=Gchil360.t1|Name=Gchil360.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000212_pilon:617239..618405+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCCGACCCACCAACGTTTGAACGTGCTCCAGATTTCCGTCCTGC
CTCGAGCGCGCTTCCCAAGCTTGATACATTTCATATCATCGTCGTGGATT
GGCACAATCTGCAGTCGCCCAATACCGTCACTTCTGTCGCATCCCGTCTT
CGTCTTCGCGATGCTTTCATTCGCTTCTTGCACACGCTCTTTGACCACAC
GCACCTCATCACTCAACCGCTCATGCTGCTCGCCACTTGCGGCCATGACG
ACCAACACATTGCGCGCATCGTGCAAGTGTTGGAAATGGTGTCATCCTCT
CATGTTCCCATTGCCAGCGTCATGCAATCGTTGCGCGCTACCCAACAGCC
GTGCTCGCCACTATCGTCATCGCAGCTGCGCCAATACAGTCGATCTCTTG
TTGATCAGCTTTCCGAATGGGGTGCATCCCGAAGTGCTGCCCCGCACACG
TACATCTTCTGCAACCCGTGCGTCTCTGTCGCTATTTCAGCCGCATTGTC
AGCCTCGCCATCTTCAATATTCTCATCAGATCGCAGCCATATCTTTCCGT
GTCAAGCCCCCTCGGAGGCAGATGGTCATCTGTCGGAGATTCTGGCACGA
CTGCTCGAAAGCACCGTCACGCTCACATTGCCCAGTGACACGGCCGCCGG
TGTAAATGTGGCTCTGAACGTACGGCCGCGCGTGCTTACGAGTACGATCG
AATATCCCACCGCACTTGTTGCCACGAAGCGCGTGGGCTTGCAAAGCGTT
CGGGAAGACGTGCTGCACAGCACACCCCTCGTTGTATGGCCCAAGCCGAC
GACACCTGTTCACGTCGAGCACAACGCATCGTTCAGCATCGTGGTACGAA
AGCTGCGTCAGTGGGACGAGGCGTTATTGTGCATAGCCATTGGCGAGGAT
TCGCAAAAGCTATTCGTACTACTGCCATCCGGAAACGAAATTCGCGCTGC
CCTCTTGCGACAAGTAGCGCATGCTGGGACTCTGCTACCCGTCCCACGTT
GTGTTGTACGAAATACAGCCCCACACGCTATTGCGCACGAGGTTGCGCAG
GAATTAGCGCTGCAATTGCTGCCCAGCACAACATTCCACGCACCATCGCT
GCGAATAGGCGGCGTGCGAAAACGGTCGGCCAACGCGGGCAGAAGAGTGA
ACTTTCGAAGGGAATAA
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